#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 17, 2024; 10:45 GMT TreeBASE (cc) 1994-2008 Study reference: Goodwin P., Xie W., & Valliani M. 2012. Three genes of miraculin-like proteins from Nicotiana benthamiana with dissimilar putative structures show highly similar patterns of induction following bacterial and fungal infections. European Journal of Plant Pathology, 134(4): 795-810. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S12626] BEGIN TAXA; TITLE Solanaceae_family_comparison; DIMENSIONS NTAX=119; TAXLABELS Capsicum_annuum_EL813054 Capsicum_annuum_TC12211 Capsicum_annuum_TC13858 Capsicum_annuum_TC14577 Capsicum_annuum_TC15087 Capsicum_annuum_TC16370 Capsicum_annuum_TC18383 Capsicum_annuum_TC18685 Capsicum_annuum_TC19010 Capsicum_annuum_TC21247 Capsicum_annuum_TC23108 Capsicum_annuum_TC24383 Capsicum_annuum_TC25350 Nicotiana_benthamiana_GU183155_|_NbMLP1 Nicotiana_benthamiana_TC17637_|_NbMLP3 Nicotiana_benthamiana_TC17973_|_NbMLP2 Nicotiana_tabacum_BP530541 Nicotiana_tabacum_EB447373 Nicotiana_tabacum_FG638558 Nicotiana_tabacum_FG639711 Nicotiana_tabacum_TC111814 Nicotiana_tabacum_TC78758_|_NtKTI1 Nicotiana_tabacum_TC79198 Nicotiana_tabacum_TC79226 Nicotiana_tabacum_TC79356 Nicotiana_tabacum_TC79402 Nicotiana_tabacum_TC80404 Nicotiana_tabacum_TC80841 Nicotiana_tabacum_TC81122 Nicotiana_tabacum_TC81500 Nicotiana_tabacum_TC82241 Nicotiana_tabacum_TC82801 Nicotiana_tabacum_TC83180 Nicotiana_tabacum_TC86004 Nicotiana_tabacum_TC90991 Nicotiana_tabacum_TC92100 Nicotiana_tabacum_TC92964 Nicotiana_tabacum_TC98053 Nicotiana_tabacum_TC98666 Petunia_hybrida_CV294795 Solanum_lycopersicum_AI773878 Solanum_lycopersicum_ES896941 Solanum_lycopersicum_ES897002 Solanum_lycopersicum_TC217632 Solanum_lycopersicum_TC217707 Solanum_lycopersicum_TC217951 Solanum_lycopersicum_TC217974 Solanum_lycopersicum_TC218284 Solanum_lycopersicum_TC219524 Solanum_lycopersicum_TC220017 Solanum_lycopersicum_TC221390 Solanum_lycopersicum_TC224061 Solanum_lycopersicum_TC225756 Solanum_lycopersicum_TC230159_|_LeMir Solanum_lycopersicum_TC232030 Solanum_lycopersicum_TC236465 Solanum_lycopersicum_TC240464 Solanum_melongena_TC12322 Solanum_melongena_TC2953 Solanum_melongena_TC4095 Solanum_melongena_TC6970 Solanum_melongena_TC7853 Solanum_melongena_TC8537 Solanum_tuberosum_AM907330 Solanum_tuberosum_AM907904 Solanum_tuberosum_AM908237 Solanum_tuberosum_AM908361 Solanum_tuberosum_CK257553 Solanum_tuberosum_CN464166 Solanum_tuberosum_CV286660 Solanum_tuberosum_CV469145 Solanum_tuberosum_CV472061 Solanum_tuberosum_CV472797 Solanum_tuberosum_CV495171 Solanum_tuberosum_CV496404 Solanum_tuberosum_CV501883 Solanum_tuberosum_DN941528 Solanum_tuberosum_DV624866 Solanum_tuberosum_DV626530 Solanum_tuberosum_DV627360 Solanum_tuberosum_TC197326 Solanum_tuberosum_TC197847 Solanum_tuberosum_TC198032 Solanum_tuberosum_TC198119 Solanum_tuberosum_TC198381 Solanum_tuberosum_TC198434 Solanum_tuberosum_TC198569 Solanum_tuberosum_TC198775 Solanum_tuberosum_TC199431 Solanum_tuberosum_TC199586 Solanum_tuberosum_TC200555 Solanum_tuberosum_TC200902 Solanum_tuberosum_TC201268 Solanum_tuberosum_TC201315 Solanum_tuberosum_TC201985 Solanum_tuberosum_TC202145 Solanum_tuberosum_TC202208 Solanum_tuberosum_TC203374 Solanum_tuberosum_TC203934 Solanum_tuberosum_TC204257 Solanum_tuberosum_TC204493 Solanum_tuberosum_TC204957 Solanum_tuberosum_TC205315 Solanum_tuberosum_TC205528 Solanum_tuberosum_TC207973 Solanum_tuberosum_TC208466 Solanum_tuberosum_TC209207 Solanum_tuberosum_TC209870 Solanum_tuberosum_TC209924 Solanum_tuberosum_TC211843 Solanum_tuberosum_TC213139 Solanum_tuberosum_TC213340 Solanum_tuberosum_TC215304 Solanum_tuberosum_TC215555 Solanum_tuberosum_TC217219 Solanum_tuberosum_TC220621 Solanum_tuberosum_TC225355 Solanum_tuberosum_TC225548 Solanum_tuberosum_TC226482 ; END; BEGIN TREES; TITLE 'Solanaceae family Mir sequences - bootstrapped dendrogram'; LINK TAXA = Solanaceae_family_comparison; TREE Supp._Fig._2 = [&U] (Solanum_tuberosum_TC202208:0.0,(((Solanum_tuberosum_TC226482:0.08858,(((((((Nicotiana_benthamiana_TC17637_|_NbMLP3:0.02034,Nicotiana_tabacum_TC79356:0.01966)924:0.02734,(Nicotiana_tabacum_TC79198:0.02307,Nicotiana_tabacum_TC111814:0.0)723:0.01817)1000:0.32686,(((Solanum_melongena_TC7853:0.33135,((Capsicum_annuum_TC24383:0.3185,(Capsicum_annuum_TC16370:0.23593,((Nicotiana_tabacum_TC98666:0.22294,(Nicotiana_tabacum_TC90991:0.13391,(Solanum_tuberosum_AM908237:0.12124,(Nicotiana_benthamiana_TC17973_|_NbMLP2:0.03209,Nicotiana_tabacum_TC98053:0.03324)998:0.05463)583:0.02979)865:0.04241)481:0.01178,(Capsicum_annuum_TC19010:0.12303,(Solanum_lycopersicum_TC217632:0.00787,Solanum_lycopersicum_AI773878:0.01693)1000:0.12885)990:0.07203)764:0.03419)1000:0.08255)960:0.05283,((Solanum_tuberosum_CK257553:0.32075,(Solanum_tuberosum_AM907330:0.16715,((Petunia_hybrida_CV294795:0.06196,(Nicotiana_benthamiana_GU183155_|_NbMLP1:0.01715,Nicotiana_tabacum_TC92100:0.017)995:0.03317)902:0.03685,(Solanum_melongena_TC4095:0.06601,(Solanum_lycopersicum_TC230159_|_LeMir:0.03327,(Solanum_tuberosum_AM908361:0.04891,(Solanum_tuberosum_TC203374:0.00888,(Solanum_tuberosum_TC201268:0.0,Solanum_tuberosum_AM907904:7.4E-4)749:0.00709)603:0.00561)838:0.02293)855:0.02062)710:0.02507)835:0.06124)1000:0.12821)416:0.00768,((Solanum_melongena_TC12322:0.09644,(Nicotiana_tabacum_TC78758_|_NtKTI1:0.03667,Nicotiana_tabacum_TC81122:0.03032)1000:0.05906)777:0.02896,(Nicotiana_tabacum_TC79226:0.06001,(Nicotiana_tabacum_TC80404:0.02207,Nicotiana_tabacum_BP530541:0.03198)967:0.02868)930:0.04824)1000:0.18432)392:0.00996)568:0.02327)675:0.0194,((((Solanum_tuberosum_TC205315:0.19482,(Solanum_melongena_TC6970:0.08292,Solanum_melongena_TC8537:0.08054)1000:0.12095)974:0.03457,((Capsicum_annuum_TC12211:0.09088,Capsicum_annuum_TC18685:0.09464)991:0.04168,(Capsicum_annuum_TC14577:0.09718,Capsicum_annuum_TC23108:0.11538)767:0.01751)1000:0.09417)928:0.03846,(Solanum_tuberosum_TC199431:0.21104,(((Nicotiana_tabacum_TC82241:0.01017,(Nicotiana_tabacum_TC80841:0.00226,Nicotiana_tabacum_FG638558:0.00221)922:0.01032)776:0.02662,(Nicotiana_tabacum_EB447373:0.01506,Nicotiana_tabacum_FG639711:0.01619)651:0.01494)872:0.02826,(Nicotiana_tabacum_TC86004:0.00319,(Nicotiana_tabacum_TC82801:0.0,Nicotiana_tabacum_TC92964:0.0)813:0.00148)1000:0.06262)1000:0.12741)945:0.04866)1000:0.06146,(Capsicum_annuum_TC13858:0.22147,(Capsicum_annuum_TC15087:0.18587,Solanum_lycopersicum_TC224061:0.20438)999:0.07449)1000:0.0894)996:0.04242)373:0.00538,(Nicotiana_tabacum_TC81500:0.13088,((Solanum_melongena_TC2953:0.10562,(Solanum_tuberosum_TC220621:0.04027,Solanum_lycopersicum_TC217951:0.04009)1000:0.05843)994:0.04541,(Capsicum_annuum_TC18383:0.06506,(Capsicum_annuum_TC21247:0.02878,(Capsicum_annuum_TC25350:0.02249,Capsicum_annuum_EL813054:0.0)867:0.02354)891:0.03061)1000:0.08606)424:0.0059)1000:0.25355)995:0.05352)617:0.00901,(((Solanum_lycopersicum_TC221390:0.19371,(Solanum_tuberosum_TC213139:0.12827,(((Solanum_tuberosum_TC201985:0.02759,(Solanum_tuberosum_TC197326:0.01246,Solanum_tuberosum_DV627360:0.0)945:0.02332)940:0.0241,(Solanum_tuberosum_TC198381:0.03448,Solanum_tuberosum_TC204957:0.02944)851:0.02379)600:0.02345,((Solanum_tuberosum_TC202145:0.04013,Solanum_tuberosum_CV495171:0.08268)168:0.0052,(Solanum_tuberosum_TC209924:0.0764,Solanum_tuberosum_CN464166:0.04386)594:0.01777)325:0.01082)823:0.03709)994:0.05065)1000:0.08287,(Solanum_tuberosum_TC215555:0.04422,(Solanum_tuberosum_TC201315:0.03251,Solanum_tuberosum_TC200555:0.02767)932:0.01727)1000:0.20856)1000:0.08773,((Solanum_tuberosum_TC198434:0.17515,Solanum_lycopersicum_TC220017:0.17169)1000:0.11709,(Nicotiana_tabacum_TC79402:0.07066,Nicotiana_tabacum_TC83180:0.07397)1000:0.16708)653:0.0107)949:0.03554)1000:0.15399,(Solanum_tuberosum_TC200902:0.05407,Solanum_lycopersicum_TC218284:0.05653)1000:0.13402)942:0.04069,(Solanum_lycopersicum_TC236465:0.04095,(Solanum_lycopersicum_ES896941:0.02202,((Solanum_lycopersicum_TC219524:0.00287,(Solanum_lycopersicum_TC217707:0.0,Solanum_lycopersicum_TC217974:0.00447)539:0.00172)213:0.00115,(Solanum_lycopersicum_ES897002:0.03757,(Solanum_lycopersicum_TC225756:0.00818,Solanum_lycopersicum_TC232030:0.00992)277:8.9E-4)14:9.2E-4)441:0.00358)824:0.01003)1000:0.15481)931:0.03529,(Solanum_tuberosum_CV469145:0.03701,(Solanum_tuberosum_TC197847:0.12865,((((Solanum_tuberosum_TC198119:0.02757,(Solanum_tuberosum_TC205528:0.01764,(Solanum_tuberosum_TC208466:0.04382,Solanum_tuberosum_TC209207:0.0)791:0.01507)575:0.00733)874:0.03949,(Solanum_tuberosum_CV501883:0.07176,(Solanum_tuberosum_TC213340:0.01338,Solanum_tuberosum_TC217219:0.07336)982:0.04389)394:0.02023)275:0.01208,(Solanum_lycopersicum_TC240464:0.11864,(Solanum_tuberosum_TC225355:0.05275,(Solanum_tuberosum_TC198032:0.03504,(Solanum_tuberosum_TC215304:0.0,Solanum_tuberosum_DV626530:0.01768)643:0.011)478:0.00383)606:0.02937)85:0.0043)77:0.00231,(Solanum_tuberosum_TC204493:0.02779,(Solanum_tuberosum_TC199586:3.4E-4,Solanum_tuberosum_CV286660:0.03722)1000:0.04867)1000:0.0495)164:0.00206)277:0.00356)957:0.04972)1000:0.06677)295:0.00728,(Solanum_tuberosum_TC204257:0.0162,(Solanum_tuberosum_TC225548:0.03385,(Solanum_tuberosum_TC209870:0.00747,(Solanum_tuberosum_CV472061:0.01119,(Solanum_tuberosum_DV624866:0.0147,(Solanum_tuberosum_TC203934:0.05078,(Solanum_tuberosum_TC207973:0.02445,Solanum_tuberosum_CV496404:0.0)587:0.00879)425:0.00233)560:0.00908)423:0.00592)358:0.00589)566:0.01234)662:0.01034)308:0.00822,(Solanum_tuberosum_CV472797:0.03341,(Solanum_tuberosum_TC198569:0.00328,Solanum_tuberosum_TC211843:0.03043)446:0.01115)21:7.3E-4)955:0.00843,(Solanum_tuberosum_DN941528:0.0,Solanum_tuberosum_TC198775:0.0)453:0.0)TRICHOTOMY; [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr52390] END;