#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on April 26, 2024; 17:57 GMT

TreeBASE (cc) 1994-2008

Study reference:
Zhang Y., Zeng C., & Li D. 2012. Complex Evolution in Arundinarieae (Poaceae: Bambusoideae):
Incongruence between plastid and nuclear GBSSI gene phylogenies. Molecular
Phylogenetics and Evolution, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S12340]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=116;
        TAXLABELS
            Acidosasa_chienouensis
            Acidosasa_chinensis
            Acidosasa_notata
            Acidosasa_purpurea
            Ampelocalamus_actinotrichus
            Ampelocalamus_patellaris
            Ampelocalamus_scandens
            Arundinaria_appalachiana
            Arundinaria_gigantea
            Arundinaria_tecta
            Bambusa_ventricosa
            Bashania_abietina
            Bashania_aristata
            Bashania_fangiana
            Bashania_fargesii
            Bashania_qiaojiaensis
            Bashania_qingchengshanensis
            Bashania_spanostachya
            Bashania_yongdeensis
            Bonia_amplexicaulis
            Bonia_levigata
            Brachystachyum_densiflorum
            Chimonobambusa_macrophylla
            Chimonobambusa_sichuanensis
            Chimonobambusa_szechuanensis
            Chimonocalamus_cibarius
            Chimonocalamus_dumosus
            Chimonocalamus_fimbriatus
            Chimonocalamus_longiusculus
            Chimonocalamus_montanus
            Chimonocalamus_pallens
            Dendrocalamus_farinosus
            Drepanostachyum_ampullare
            Drepanostachyum_hookerianum
            Fargesia_decurvata
            Fargesia_fungosa
            Fargesia_macclureana
            Fargesia_nitida
            Fargesia_qinlingensis
            Ferrocalamus_strictus
            Gaoligongshania_megalothyrsa
            Gelidocalamus_rutilans
            Gelidocalamus_sp1
            Gelidocalamus_sp2
            Gelidocalamus_tessellatus
            Himalayacalamus_falconeri
            Indocalamus_barbatus
            Indocalamus_emeiensis
            Indocalamus_hirsutissimus
            Indocalamus_hirtivaginatus
            Indocalamus_jinpingensis
            Indocalamus_longiauritus
            Indocalamus_pseudosinicus
            Indocalamus_sinicus_Zeng_&_Zhang_06081
            Indocalamus_sinicus_Zhang_08034
            Indocalamus_tongchunensis
            Indocalamus_wilsonii_Zeng_&_S.D._Zhang_07119
            Indocalamus_wilsonii_Zhang_07088b
            Indocalamus_wuxiensis
            Indosasa_crassiflora
            Indosasa_gigantea
            Indosasa_shibataeoides
            Indosasa_sinica
            Neomicrocalamus_prainii
            Oligostachyum_oedogonatum
            Oligostachyum_scabriflorum
            Oligostachyum_shiuyingianum
            Oligostachyum_sulcatum
            Phyllostachys_edulis
            Phyllostachys_nidularia
            Phyllostachys_nigra
            Pleioblastus_amarus
            Pleioblastus_gramineus
            Pleioblastus_intermedius
            Pleioblastus_juxianensis
            Pleioblastus_maculatus
            Pleioblastus_sanmingensis
            Pleioblastus_solidus
            Pleioblastus_sp
            Pleioblastus_wuyishanensis
            Pleioblastus_yixingensis
            Pseudosasa_acutivagina
            Pseudosasa_amabilis
            Pseudosasa_amabilis_var_convexa
            Pseudosasa_cantorii
            Pseudosasa_gracilis
            Pseudosasa_guanxianensis
            Pseudosasa_japonica
            Pseudosasa_japonica_var_tsutsumiana
            Pseudosasa_maculifera
            Pseudosasa_usawae
            Sasa_guangxiensis
            Sasa_kurilensis
            Sasa_longiligulata
            Sasa_magnonoda
            Sasa_oshidensis
            Sasa_palmata
            Sasa_qingyuanensis
            Sasa_senanensis
            Sasa_shimidzuana
            Sasa_sinica
            Sasa_tsuboiana
            Sasa_veitchii
            Shibataea_lanceifolia
            Shibataea_nanpingensis
            Sinobambusa_intermedia
            Sinobambusa_tootsik
            Thamnocalamus_spathiflorus
            Thamnocalamus_spathiflorus_var_crassinodus_G78
            Thamnocalamus_spathiflorus_var_crassinodus_G93
            Thamnocalamus_tessellatus
            Yushania_alpina
            Yushania_baishanzuensis
            Yushania_basihirsuta
            Yushania_brevipaniculata
            Yushania_yadongensis
            ;
END;

BEGIN TREES;
      TITLE 8_plastid_RAxML_bipartitions;
      LINK TAXA = Taxa;
      TREE best = [&R] (((Bonia_levigata:0.00133785816480774,Bonia_amplexicaulis:0.0010896867245220449)100:0.0018848166795199695,(Neomicrocalamus_prainii:0.003577550167513804,(Dendrocalamus_farinosus:0.0012102322903964709,Bambusa_ventricosa:0.0013587882006135853)92:3.517569390545375E-4)88:7.478785349331538E-4)100:0.008927307169777073,((Thamnocalamus_tessellatus:0.0021461838245293,(Indocalamus_wilsonii_Zeng_&_S.D._Zhang_07119:3.731716181926732E-4,Indocalamus_wilsonii_Zhang_07088b:7.520522011742449E-4)100:0.0027708877274787666)65:2.3890336889856133E-4,(((Shibataea_lanceifolia:5.2834933681955E-7,Shibataea_nanpingensis:5.2834933681955E-7)100:0.0023214524567179693,((Indocalamus_jinpingensis:0.002877790014998892,(Pseudosasa_gracilis:7.846392879851379E-4,(Sasa_guangxiensis:2.5121533396081863E-4,(Sasa_longiligulata:6.285748879090114E-4,Sasa_magnonoda:3.791294475733077E-4)69:1.2487035988399624E-4)100:0.0012646720207717304)97:6.507544296439054E-4)60:1.230263678748873E-4,(Gelidocalamus_tessellatus:0.001121247035765166,(Ferrocalamus_strictus:0.001996399104818731,(Gelidocalamus_sp1:2.481812849128577E-4,(Indocalamus_tongchunensis:0.00124371799992023,(Indocalamus_pseudosinicus:6.428518486696023E-4,Indocalamus_barbatus:4.973540142990563E-4)75:1.2772515320926087E-4)21:5.2834933681955E-7)100:0.0012800367972001737)21:5.2834933681955E-7)30:1.276226901641555E-4)24:1.3485864986028786E-4)95:7.678009353433756E-4,((((Arundinaria_gigantea:8.754577888519265E-4,(Arundinaria_appalachiana:1.2727306259180835E-4,Arundinaria_tecta:1.2513092098933234E-4)100:0.0011994876675432374)91:2.6374527581747353E-4,(Sasa_palmata:5.2834933681955E-7,(Sasa_oshidensis:4.992824829309998E-4,(Sasa_kurilensis:2.496332879017931E-4,((Sasa_senanensis:4.99989765922938E-4,Sasa_shimidzuana:4.999125749482733E-4)78:5.2834933681955E-7,(Sasa_veitchii:5.2834933681955E-7,Sasa_tsuboiana:1.251389162302233E-4)93:5.2834933681955E-7)35:5.2834933681955E-7)55:5.2834933681955E-7)60:1.2430811843015571E-4)97:7.482423777846323E-4)46:5.2834933681955E-7,((Pleioblastus_sp:6.282028955580745E-4,(Pleioblastus_gramineus:5.019950056965771E-4,(Pseudosasa_japonica:5.2834933681955E-7,Pseudosasa_japonica_var_tsutsumiana:5.2834933681955E-7)91:2.5045004874335374E-4)100:7.544234965623806E-4)100:6.269497813758958E-4,(Indosasa_shibataeoides:2.498524163710585E-4,(Sinobambusa_tootsik:2.492144867593795E-4,(Sinobambusa_intermedia:5.2834933681955E-7,(Pseudosasa_cantorii:1.2466101688322304E-4,(Oligostachyum_scabriflorum:5.2834933681955E-7,(Acidosasa_purpurea:5.2834933681955E-7,(Oligostachyum_sulcatum:5.2834933681955E-7,(Indosasa_crassiflora:1.2473122169103393E-4,(Acidosasa_chinensis:5.2834933681955E-7,(Pseudosasa_amabilis:5.2834933681955E-7,(Oligostachyum_shiuyingianum:5.2834933681955E-7,((Indosasa_sinica:1.2477453028177573E-4,Pleioblastus_maculatus:3.8905075287943793E-4)30:5.2834933681955E-7,(Acidosasa_chienouensis:5.2834933681955E-7,Indosasa_gigantea:5.2834933681955E-7)72:1.2479875966421092E-4)37:5.2834933681955E-7)44:5.2834933681955E-7)19:5.2834933681955E-7)24:5.2834933681955E-7)10:5.2834933681955E-7)5:5.2834933681955E-7)19:5.2834933681955E-7)47:5.2834933681955E-7)53:5.2834933681955E-7)41:5.2834933681955E-7)63:1.2867019594501876E-4)99:7.744090768011047E-4)98:5.150215273597148E-4)96:7.579672628590731E-4,(((Thamnocalamus_spathiflorus:0.0016385261297192147,(Thamnocalamus_spathiflorus_var_crassinodus_G93:2.503935727626994E-4,Thamnocalamus_spathiflorus_var_crassinodus_G78:5.2834933681955E-7)99:6.270093632225558E-4)99:0.0015089006070402352,(Gaoligongshania_megalothyrsa:0.004190079485800886,(Yushania_alpina:0.0030778200149135272,(Ampelocalamus_actinotrichus:0.002128538576991069,((Chimonocalamus_longiusculus:5.040857845938703E-4,Chimonocalamus_dumosus:2.5277105304463883E-4)98:3.802874199499777E-4,(Chimonocalamus_montanus:5.2834933681955E-7,Chimonocalamus_cibarius:1.257764954177989E-4)100:7.544079291947565E-4)80:1.442474411044586E-4)100:0.0012470137591686305)48:1.3800339545501944E-4)43:2.5846695923586164E-4)11:5.2834933681955E-7,((Indocalamus_sinicus_Zeng_&_Zhang_06081:2.487880134732135E-4,Indocalamus_sinicus_Zhang_08034:4.986303459631103E-4)100:0.002141073279980126,(Ampelocalamus_scandens:0.0012541731439688999,(Yushania_baishanzuensis:2.49648912579394E-4,((Pseudosasa_acutivagina:5.2834933681955E-7,((Pseudosasa_amabilis_var_convexa:5.2834933681955E-7,Pseudosasa_maculifera:2.4943692186062653E-4)86:2.492546336502624E-4,(Phyllostachys_edulis:5.2834933681955E-7,((Oligostachyum_oedogonatum:5.2834933681955E-7,Pleioblastus_sanmingensis:5.2834933681955E-7)63:1.248272769185269E-4,(((Phyllostachys_nigra:1.249829589699696E-4,Pseudosasa_usawae:3.749418346092891E-4)21:5.2834933681955E-7,(Acidosasa_notata:1.250209300347448E-4,(Pleioblastus_wuyishanensis:5.2834933681955E-7,Pleioblastus_solidus:5.2834933681955E-7)38:5.2834933681955E-7)65:1.2495509302926617E-4)10:5.2834933681955E-7,(Pleioblastus_intermedius:5.2834933681955E-7,((Pleioblastus_juxianensis:5.2834933681955E-7,Pleioblastus_yixingensis:5.2834933681955E-7)58:5.2834933681955E-7,(Pleioblastus_amarus:5.2834933681955E-7,(Brachystachyum_densiflorum:5.2834933681955E-7,(Sasa_qingyuanensis:1.250835051195375E-4,Sasa_sinica:5.2834933681955E-7)43:5.2834933681955E-7)10:5.2834933681955E-7)28:5.2834933681955E-7)24:5.2834933681955E-7)10:5.2834933681955E-7)25:5.2834933681955E-7)20:5.2834933681955E-7)44:5.2834933681955E-7)56:1.2433878534468863E-4)51:1.243626250004769E-4,((Yushania_brevipaniculata:2.507858858875726E-4,(Himalayacalamus_falconeri:0.00176532004723521,(Drepanostachyum_ampullare:0.0011290327035785447,Drepanostachyum_hookerianum:3.752819157300722E-4)97:2.4776917974606195E-4)98:7.526942139141175E-4)48:1.243482425570522E-4,((Bashania_aristata:1.2496472392626895E-4,Indocalamus_emeiensis:8.774177437591831E-4)63:1.2511902348868824E-4,((Bashania_fangiana:1.2509645561859534E-4,Bashania_abietina:1.2503261486580532E-4)60:1.2486298052055963E-4,((Indocalamus_longiauritus:1.2499237847736152E-4,(Indocalamus_hirsutissimus:1.250621939109251E-4,(Pseudosasa_guanxianensis:5.2834933681955E-7,Bashania_qingchengshanensis:5.2834933681955E-7)100:7.52508308983508E-4)30:5.2834933681955E-7)54:1.2476463101905464E-4,(Chimonobambusa_sichuanensis:1.2521980338538112E-4,(Fargesia_fungosa:5.2834933681955E-7,((Chimonocalamus_fimbriatus:2.500960974157339E-4,Chimonobambusa_macrophylla:5.028848654011534E-4)43:1.2493928156202556E-4,((Ampelocalamus_patellaris:6.001049063112122E-4,(Bashania_yongdeensis:3.75745756355382E-4,(Fargesia_macclureana:6.171562914946855E-4,Bashania_spanostachya:1.0494298887168309E-4)52:2.756420164483846E-5)45:5.2834933681955E-7)29:5.2834933681955E-7,((Indocalamus_hirtivaginatus:5.2834933681955E-7,(Gelidocalamus_rutilans:5.2834933681955E-7,Gelidocalamus_sp2:1.2505443310340463E-4)71:1.2498988377153292E-4)65:1.2493497866557669E-4,(Phyllostachys_nidularia:3.75215171487171E-4,(Bashania_qiaojiaensis:2.5021781712927484E-4,(Chimonobambusa_szechuanensis:3.7528426606875875E-4,(Yushania_basihirsuta:2.501292062415418E-4,(Chimonocalamus_pallens:1.2506127180178617E-4,(Indocalamus_wuxiensis:3.753192422414687E-4,(Yushania_yadongensis:6.267250479071371E-4,(Fargesia_qinlingensis:8.746994218891257E-4,(Fargesia_decurvata:3.7608372709423544E-4,(Bashania_fargesii:2.499991980172206E-4,Fargesia_nitida:5.034617576676332E-4)42:5.2834933681955E-7)68:5.2834933681955E-7)57:2.581154404517974E-4)21:5.2834933681955E-7)4:5.2834933681955E-7)2:5.2834933681955E-7)0:5.2834933681955E-7)0:5.2834933681955E-7)0:5.2834933681955E-7)0:5.2834933681955E-7)0:5.2834933681955E-7)0:5.2834933681955E-7)0:5.2834933681955E-7)0:5.2834933681955E-7)0:5.2834933681955E-7)0:5.2834933681955E-7)1:5.2834933681955E-7)3:5.2834933681955E-7)4:5.2834933681955E-7)8:5.2834933681955E-7)41:1.275886038805709E-4)45:1.281777836974616E-4)35:1.2674307662168305E-4)26:1.2670340680489206E-4)6:5.2834933681955E-7)27:1.9867753159487402E-4)100:0.008927307169777073);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr52789]


END;