#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 17, 2024; 8:14 GMT

TreeBASE (cc) 1994-2008

Study reference:
Chou L., Huang D., Meier R., & Todd P. 2008. More evidence for pervasive paraphyly
in scleractinian corals: systematic study of Southeast Asian Faviidae (Cnidaria;
Scleractinia) based on molecular and morphological data. Molecular Phylogenetics
and Evolution, null.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S2177]

BEGIN TAXA;
        TITLE  Molecular;
        DIMENSIONS NTAX=93;
        TAXLABELS
            Acanthastrea_echinata
            Acropora_tenuis
            Anacropora_matthai
            Barabattoia_amicorum_1
            Barabattoia_amicorum_2
            Caulastrea_echinulata
            Colpophyllia_natans
            Cyphastrea_chalcidicum
            Cyphastrea_microphthalma
            Cyphastrea_serailia_1
            Cyphastrea_serailia_2
            Diploastrea_heliopora_1
            Diploastrea_heliopora_2
            Echinopora_gemmacea
            Echinopora_lamellosa
            Echinopora_pacificus
            Favia_aff._favus_1
            Favia_aff._favus_2
            Favia_danae_1
            Favia_danae_2
            Favia_favus_1
            Favia_favus_2
            Favia_favus_3
            Favia_favus_4
            Favia_helianthoides_1
            Favia_helianthoides_2
            Favia_lizardensis
            Favia_matthaii_1
            Favia_matthaii_2
            Favia_matthaii_3
            Favia_matthaii_4
            Favia_matthaii_5
            Favia_maxima_1
            Favia_maxima_2
            Favia_pallida_1
            Favia_pallida_2
            Favia_rotumana_1
            Favia_rotumana_2
            Favia_speciosa_1
            Favia_speciosa_2
            Favia_speciosa_3
            Favia_speciosa_4
            Favia_speciosa_5
            Favites_complanata_1
            Favites_complanata_2
            Favites_complanata_3
            Favites_flexuosa
            Favites_paraflexuosa
            Favites_pentagona_1
            Favites_pentagona_2
            Goniastrea_aspera
            Goniastrea_australensis_1
            Goniastrea_australensis_2
            Goniastrea_edwardsi_1
            Goniastrea_edwardsi_2
            Goniastrea_favulus_1
            Goniastrea_favulus_2
            Goniastrea_palauensis
            Goniastrea_pectinata
            Goniastrea_retiformis_1
            Goniastrea_retiformis_2
            Leptoria_phrygia
            Montastraea_annularis
            Montastraea_faveolata
            Montastraea_franksi
            Montastrea_curta_1
            Montastrea_curta_2
            Montastrea_curta_3
            Montastrea_magnistellata_1
            Montastrea_magnistellata_2
            Montastrea_magnistellata_3
            Montastrea_valenciennesi_1
            Montastrea_valenciennesi_2
            Montastrea_valenciennesi_3
            Montastrea_valenciennesi_4
            Montastrea_valenciennesi_5
            Montipora_cactus
            Mussa_angulosa
            Oulastrea_crispata
            Oulophyllia_bennettae_1
            Oulophyllia_bennettae_2
            Oulophyllia_bennettae_3
            Oulophyllia_crispa_1
            Oulophyllia_crispa_2
            Platygyra_daedalea
            Platygyra_lamellina
            Platygyra_pini_1
            Platygyra_pini_2
            Platygyra_sinensis
            Platygyra_verweyi
            Porites_porites
            Scapophyllia_cylindrica
            Siderastrea_radians
            ;
END;

BEGIN TREES;
      TITLE Tb9316;
      LINK TAXA = Molecular;
      TREE MPT_1 = [&R] (Porites_porites,((Oulastrea_crispata,(((Favites_flexuosa,((Favites_paraflexuosa,((((Acanthastrea_echinata,(Favites_complanata_1,(Favites_complanata_2,Favites_complanata_3))),((Echinopora_pacificus,(Favites_pentagona_1,Favites_pentagona_2)),(Favia_favus_3,((Favia_favus_1,(Favia_helianthoides_1,Favia_helianthoides_2)),(Favia_favus_2,Favia_favus_4))))),(((Cyphastrea_chalcidicum,Cyphastrea_microphthalma),(Cyphastrea_serailia_1,Cyphastrea_serailia_2)),(Leptoria_phrygia,((Platygyra_daedalea,(Platygyra_pini_2,(Platygyra_pini_1,Platygyra_sinensis))),(Platygyra_lamellina,Platygyra_verweyi))))),(Favia_maxima_1,Favia_maxima_2))),((((((Favia_lizardensis,((((((Favia_speciosa_1,((Favia_speciosa_2,(Barabattoia_amicorum_1,(Barabattoia_amicorum_2,Favia_speciosa_5))),(Favia_speciosa_3,Favia_speciosa_4))),((Montastrea_valenciennesi_3,(Montastrea_curta_1,(Montastrea_valenciennesi_1,(Montastrea_valenciennesi_4,(Montastrea_curta_2,(Montastrea_valenciennesi_2,(Montastrea_curta_3,Montastrea_valenciennesi_5))))))),(Montastrea_magnistellata_3,(Montastrea_magnistellata_1,Montastrea_magnistellata_2)))),((Favia_aff._favus_1,Favia_aff._favus_2),(((Favia_danae_1,Favia_danae_2),(Favia_matthaii_5,(Favia_matthaii_1,Favia_matthaii_2))),(Favia_matthaii_3,Favia_matthaii_4)))),(Favia_pallida_1,Favia_pallida_2)),(Favia_rotumana_1,Favia_rotumana_2)),(Goniastrea_aspera,Goniastrea_palauensis))),(Caulastrea_echinulata,((Oulophyllia_bennettae_3,(Oulophyllia_bennettae_1,Oulophyllia_bennettae_2)),(Oulophyllia_crispa_1,Oulophyllia_crispa_2)))),(Scapophyllia_cylindrica,((Goniastrea_pectinata,(Goniastrea_australensis_1,(Goniastrea_australensis_2,(Goniastrea_favulus_1,Goniastrea_favulus_2)))),(Goniastrea_edwardsi_1,Goniastrea_edwardsi_2)))),(Echinopora_gemmacea,Echinopora_lamellosa)),(Goniastrea_retiformis_1,Goniastrea_retiformis_2)),(Montastraea_franksi,(Montastraea_annularis,Montastraea_faveolata))))),(Diploastrea_heliopora_1,Diploastrea_heliopora_2)),(Colpophyllia_natans,Mussa_angulosa))),(Siderastrea_radians,(Acropora_tenuis,(Anacropora_matthai,Montipora_cactus)))));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr5354]


END;