#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 19, 2024; 11:12 GMT

TreeBASE (cc) 1994-2008

Study reference:
Kinoshita A., Sasaki H., & Nara K. 2012. Multiple origins of sequestrate basidiomes
within Entoloma inferred from molecular phylogenetic analyses. Fungal Biology,
116(12): 1250-1262.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S12868]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=43;
        TAXLABELS
            Entoloma_alpicola
            Entoloma_aprile_1
            Entoloma_aprile_2
            Entoloma_caeruleopolitum_2
            Entoloma_cf._alpicola
            Entoloma_clypeatum
            Entoloma_clypeatum_f._hybdirum
            Entoloma_crassipes
            Entoloma_nidorosum
            Entoloma_rhodopolium
            Entoloma_sepium
            Entoloma_sinuatum_1
            Entoloma_sinuatum_2
            Entoloma_sinuatum_3
            Entoloma_sp._EM677
            Entoloma_sp._P219
            Entoloma_sp._src742
            K381
            K387
            K388
            Uncultured_Basidiomycete_274
            'Uncultured Basidiomycete B3_9'
            Uncultured_Basidiomycota_man24
            Uncultured_EMF_16
            Uncultured_EMF_919F
            Uncultured_EMF_AK21
            Uncultured_EMF_Gre
            Uncultured_EMF_Kal
            Uncultured_EMF_M31
            Uncultured_EMF_P090
            Uncultured_EMF_SDL67
            Uncultured_EMF_SR06
            Uncultured_EMF_TK3
            'Uncultured Entoloma 2_277'
            Uncultured_Entoloma_4Bart
            Uncultured_Entoloma_AB10
            Uncultured_Entoloma_NHPY25
            Uncultured_Entoloma_NHPY26
            Uncultured_Entoloma_RSEM33
            Uncultured_Entolomataceae_3058C
            Uncultured_Entolomataceae_D16
            Uncultured_Entolomataceae_MT44
            'Uncultured fungus HB_1c'
            ;
END;

BEGIN TREES;
      TITLE 'FigS1_Rhodopoloid_NJ';
      LINK TAXA = Taxa;
      TREE Fig._S1_NJ = [&R] (((((((((((((((Entoloma_sinuatum_1:1.0209E-4,Uncultured_Entoloma_4Bart:0.00240998)0.9590:0.0070678,Uncultured_EMF_SDL67:5.2993E-4)0.9940:0.01617713,Entoloma_sp._src742:0.01873704)0.4560:0.00461199,Entoloma_alpicola:0.01877725)0.1370:0.00107814,(Uncultured_Entoloma_NHPY25:0.01903437,(Uncultured_EMF_TK3:0.00201317,Uncultured_Entolomataceae_D16:0.00302246)1.0000:0.02394897)0.2700:0.0018736)0.0860:0.0017977,Uncultured_Entolomataceae_3058C:0.0229303)0.0230:0.00205815,(Entoloma_cf._alpicola:0.01769872,(Uncultured_EMF_919F:0.00875667,((Uncultured_Entoloma_AB10:0.0,Uncultured_Entoloma_RSEM33:0.0)0.9990:0.01621417,(Uncultured_EMF_Gre:0.00749855,Entoloma_nidorosum:6.349E-5)0.9580:0.00169894)0.9770:0.00929595)0.5740:0.00300401)0.7870:0.01055561)0.0090:4.9977E-4,(Uncultured_Basidiomycota_man24:0.01695019,(Entoloma_rhodopolium:0.02696546,Entoloma_caeruleopolitum_2:0.01453902)0.4020:0.00256168)0.1480:0.00234556)0.0140:6.5077E-4,Uncultured_EMF_AK21:0.03158553)0.0100:6.5032E-4,((Entoloma_sinuatum_2:0.02166404,Entoloma_sinuatum_3:0.01163141)0.8360:0.01188665,(Uncultured_EMF_16:0.0136575,(Uncultured_EMF_Kal:0.00662835,Uncultured_Entolomataceae_MT44:0.00606071)1.0000:0.02405378)0.9420:0.012329)0.1450:0.00183117)0.0030:0.00112167,(Uncultured_Basidiomycete_274:0.01115802,Uncultured_Entoloma_NHPY26:0.01953923)0.1560:0.0018495)0.1320:0.00352839,(Uncultured_EMF_P090:0.03013305,Uncultured_EMF_M31:0.04763531)0.4100:0.00639414)0.1500:0.00187889,(Entoloma_crassipes:0.08419286,('Uncultured Entoloma 2_277':0.01443201,((Uncultured_EMF_SR06:0.03717656,Entoloma_sp._P219:0.018275)0.5460:0.00329713,('Uncultured Basidiomycete B3_9':0.00572865,'Uncultured fungus HB_1c':0.00185053)1.0000:0.03282667)0.4800:0.00552727)0.4290:0.00289013)0.4780:0.00685206)0.3000:0.00332962,Entoloma_sp._EM677:0.04667546)0.6860:0.00833518,(K381:0.00189908,(K387:0.0,K388:0.0)0.7670:6.1588E-4)1.0000:0.07374329,((Entoloma_clypeatum:0.00633645,Entoloma_sepium:0.00376893)1.0000:0.02582411,(Entoloma_aprile_2:0.0254496,(Entoloma_aprile_1:0.00267967,Entoloma_clypeatum_f._hybdirum:0.00487365)1.0000:0.01622412)0.5380:0.00309867)0.8980:0.01129016);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr53682]


END;