#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 21, 2024; 9:33 GMT

TreeBASE (cc) 1994-2008

Study reference:
Nagel J.H., Gryzenhout M., Slippers B., Wingfield M.J., Hardy G.E., Stukely M., &
Burgess T.I. 2013. Characterization of Phytophthora hybrids from ITS clade 6 associated
with riparian ecosystems in South Africa and Australia. Fungal Biology,
.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S12996]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=38;
        TAXLABELS
            Phytophthora_amnicola_CBS13152_JQ029948
            Phytophthora_amnicola_VHS19503_JQ029946
            Phytophthora_amnicola_x_Phytophthora_taxon_PgChlamydo_CMW37727
            Phytophthora_amnicola_x_Phytophthora_taxon_PgChlamydo_CMW37728
            Phytophthora_amnicola_x_Phytophthora_taxon_PgChlamydo_CMW37729
            Phytophthora_amnicola_x_Phytophthora_taxon_PgChlamydo_CMW37730
            Phytophthora_amnicola_x_Phytophthora_taxon_PgChlamydo_MUCC774
            Phytophthora_asparagi_VHS17644_HQ012844
            Phytophthora_fluvialis_CBS129424_JF701441
            Phytophthora_fluvialis_VHS17350_JF701440
            Phytophthora_gonapodyides_MUCC761_HQ012850
            Phytophthora_gonapodyides_MUCC776_JN547642
            Phytophthora_humicola_WPC_P6702
            Phytophthora_inundata_VHS16836
            Phytophthora_litoralis_CBS127953_HQ012866
            Phytophthora_litoralis_VHS17085_HQ012864
            Phytophthora_megasperma_DDS3432_HQ012867
            Phytophthora_megasperma_VHS17183_HQ012868
            Phytophthora_pgchlamydo_IMI389731_JF935968
            Phytophthora_pgchlamydo_SLPA121_JN547652
            Phytophthora_pgchlamydo_VHS3753_HQ012878
            Phytophthora_pgchlamydo_VHS6595_HQ012879
            Phytophthora_taxon_PgChlamydo_x_Phytophthora_amnicola_MUCC777
            Phytophthora_taxon_PgChlamydo_x_Phytophthora_amnicola_MUCC778
            Phytophthora_taxon_PgChlamydo_x_Phytophthora_amnicola_MUCC779
            Phytophthora_thermophila_CBS127954_HQ012872
            Phytophthora_thermophila_VHS16164_HQ012875
            Phytophthora_thermophila_×_Phytophthora__taxon_PgChlamydo_MUCC783
            Phytophthora_thermophila_×_Phytophthora__taxon_PgChlamydo_MUCC784
            Phytophthora_thermophila_×_Phytophthora_amnicola_CMW37731
            Phytophthora_thermophila_×_Phytophthora_amnicola_CMW37732
            Phytophthora_thermophila_×_Phytophthora_amnicola_CMW37733
            Phytophthora_thermophila_×_Phytophthora_amnicola_CMW37734
            Phytophthora_thermophila_×_Phytophthora_amnicola_MUCC780
            Phytophthora_thermophila_×_Phytophthora_amnicola_MUCC781
            Phytophthora_thermophila_×_Phytophthora_amnicola_MUCC782
            Phytophthora_thermophila_×_Phytophthora_amnicola_VHS22715
            Phytophthora_thermophila_×_Phytophthora_amnicola_VHS5185
            ;
END;

BEGIN TREES;
      TITLE coxI_MP_bootstrap_consensus;
      LINK TAXA = Taxa;
      TREE coxI_MP_bootstrap_consensus = [&R] (Phytophthora_asparagi_VHS17644_HQ012844:0.0,((Phytophthora_humicola_WPC_P6702:100.0,Phytophthora_inundata_VHS16836:100.0)100:100.0,((Phytophthora_amnicola_CBS13152_JQ029948:100.0,Phytophthora_amnicola_VHS19503_JQ029946:100.0,Phytophthora_amnicola_x_Phytophthora_taxon_PgChlamydo_CMW37727:100.0,Phytophthora_amnicola_x_Phytophthora_taxon_PgChlamydo_CMW37728:100.0,Phytophthora_amnicola_x_Phytophthora_taxon_PgChlamydo_CMW37729:100.0,Phytophthora_amnicola_x_Phytophthora_taxon_PgChlamydo_CMW37730:100.0,Phytophthora_amnicola_x_Phytophthora_taxon_PgChlamydo_MUCC774:100.0)100:100.0,(((Phytophthora_fluvialis_CBS129424_JF701441:100.0,Phytophthora_fluvialis_VHS17350_JF701440:100.0)100:100.0,(Phytophthora_litoralis_CBS127953_HQ012866:100.0,Phytophthora_litoralis_VHS17085_HQ012864:100.0)100:100.0)99:99.0,(Phytophthora_thermophila_CBS127954_HQ012872:100.0,Phytophthora_thermophila_VHS16164_HQ012875:100.0,Phytophthora_thermophila_×_Phytophthora_amnicola_MUCC780:100.0,Phytophthora_thermophila_×_Phytophthora_amnicola_MUCC781:100.0,Phytophthora_thermophila_×_Phytophthora_amnicola_MUCC782:100.0,Phytophthora_thermophila_×_Phytophthora__taxon_PgChlamydo_MUCC783:100.0,Phytophthora_thermophila_×_Phytophthora__taxon_PgChlamydo_MUCC784:100.0,Phytophthora_thermophila_×_Phytophthora_amnicola_CMW37731:100.0,(Phytophthora_thermophila_×_Phytophthora_amnicola_CMW37732:100.0,Phytophthora_thermophila_×_Phytophthora_amnicola_CMW37733:100.0)65:65.0,Phytophthora_thermophila_×_Phytophthora_amnicola_CMW37734:100.0,Phytophthora_thermophila_×_Phytophthora_amnicola_VHS5185:100.0,Phytophthora_thermophila_×_Phytophthora_amnicola_VHS22715:100.0)100:100.0)75:75.0,((Phytophthora_gonapodyides_MUCC761_HQ012850:100.0,Phytophthora_gonapodyides_MUCC776_JN547642:100.0)100:100.0,(Phytophthora_megasperma_DDS3432_HQ012867:100.0,Phytophthora_megasperma_VHS17183_HQ012868:100.0)100:100.0)78:78.0,((Phytophthora_taxon_PgChlamydo_x_Phytophthora_amnicola_MUCC777:100.0,Phytophthora_taxon_PgChlamydo_x_Phytophthora_amnicola_MUCC778:100.0,Phytophthora_taxon_PgChlamydo_x_Phytophthora_amnicola_MUCC779:100.0)86:86.0,Phytophthora_pgchlamydo_IMI389731_JF935968:100.0,Phytophthora_pgchlamydo_SLPA121_JN547652:100.0)100:100.0,(Phytophthora_pgchlamydo_VHS3753_HQ012878:100.0,Phytophthora_pgchlamydo_VHS6595_HQ012879:100.0)100:100.0)51:51.0)100:100.0)0;
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr55223]


END;