#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 10, 2024; 6:45 GMT

TreeBASE (cc) 1994-2008

Study reference:
Alvarado P. 2011. Comparison between Tuber gennadii and T. oligospermum lineages
reveals the existence of the new species T. cistophilum (Tuberaceae, Pezizales).
Mycologia, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S12205]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=64;
        TAXLABELS
            Helvella_lacunosa_U42681
            Tuber_borchii_AY515305
            Tuber_borchii_FJ809799
            Tuber_borchii_FJ809852
            Tuber_borchii_JN392291
            Tuber_californicum_AF127120
            Tuber_californicum_AF156927
            Tuber_cistophilum_JN392292
            Tuber_cistophilum_JN392293
            Tuber_cistophilum_JN392294
            Tuber_cistophilum_JN392295
            Tuber_cistophilum_JN392296
            Tuber_cistophilum_JN392297
            Tuber_cistophilum_JN392298
            Tuber_cistophilum_JN392299
            Tuber_cistophilum_JN392300
            Tuber_cistophilum_JN392301
            Tuber_cistophilum_JN392302
            Tuber_gennadii_FJ809849
            Tuber_gennadii_JN392272
            Tuber_gennadii_JN392273
            Tuber_gennadii_JN392274
            Tuber_gennadii_JN392275
            Tuber_gennadii_JN392276
            Tuber_gennadii_JN392277
            Tuber_gennadii_JN392278
            Tuber_gennadii_JN392279
            Tuber_gennadii_JN392280
            Tuber_gennadii_JN392281
            Tuber_lacunosum_JN392283
            Tuber_lacunosum_JN392284
            Tuber_lacunosum_JN392285
            Tuber_lacunosum_JN392286
            Tuber_lacunosum_JN392287
            Tuber_lacunosum_JN392288
            Tuber_lacunosum_JN392289
            Tuber_lacunosum_JN392290
            Tuber_oligospermum_AY515306
            Tuber_oligospermum_JN392308
            Tuber_oligospermum_JN392309
            Tuber_oligospermum_JN392310
            Tuber_oligospermum_JN392311
            Tuber_oligospermum_JN392312
            Tuber_oligospermum_JN392313
            Tuber_oligospermum_JN392314
            Tuber_oligospermum_JN392315
            Tuber_oligospermum_JN392316
            Tuber_oligospermum_JN392317
            Tuber_oligospermum_JN392318
            Tuber_oligospermum_JN392319
            Tuber_oligospermum_JN392320
            Tuber_oligospermum_JN392321
            Tuber_oligospermum_JN392322
            Tuber_oligospermum_JN392323
            Tuber_oligospermum_JN392324
            Tuber_puberulum_AJ969625
            Tuber_puberulum_AJ969626
            Tuber_sphaerospermum_JN392304
            Tuber_sphaerospermum_JN392305
            Tuber_sphaerospermum_JN392306
            Tuber_sphaerospermum_JN392307
            Tuber_sphaerosporum_FJ809805
            Tuber_sphaerosporum_FJ809853
            Tuber_sphaerosporum_FJ809854
            ;
END;

BEGIN TREES;
      TITLE Tuber_LSU;
      LINK TAXA = Taxa;
      TREE PAUP_1 = [&R] (Helvella_lacunosa_U42681:0.108859,(((Tuber_lacunosum_JN392283:0.0,(Tuber_lacunosum_JN392290:0.0,(Tuber_lacunosum_JN392289:0.0,(Tuber_lacunosum_JN392288:0.0,(Tuber_gennadii_FJ809849:0.0,(Tuber_lacunosum_JN392287:0.0,(Tuber_lacunosum_JN392285:0.0,(Tuber_lacunosum_JN392284:0.0,Tuber_lacunosum_JN392286:0.0):0.0):0.0):0.0):0.0):0.0):0.0):0.002153):0.029591,((Tuber_gennadii_JN392278:0.003897,(Tuber_gennadii_JN392281:0.0,(Tuber_gennadii_JN392279:0.0,Tuber_gennadii_JN392280:0.0):0.0):0.007303):0.023481,((Tuber_gennadii_JN392276:0.004293,Tuber_gennadii_JN392277:0.00439):0.007238,(Tuber_gennadii_JN392275:0.034023,(Tuber_gennadii_JN392273:0.002132,(Tuber_gennadii_JN392272:0.006484,Tuber_gennadii_JN392274:0.0):0.0):0.003917):0.013965):0.003328):0.009772):0.030339,(((Tuber_sphaerospermum_JN392307:0.011622,(Tuber_sphaerospermum_JN392304:0.002151,(Tuber_sphaerospermum_JN392305:0.0,Tuber_sphaerospermum_JN392306:0.0):0.002178):0.003774):0.028419,((Tuber_oligospermum_JN392311:0.00215,(Tuber_oligospermum_JN392314:0.0,(Tuber_oligospermum_JN392312:0.0,Tuber_oligospermum_JN392313:0.0):0.0):0.0):0.006701,((Tuber_oligospermum_JN392310:0.0,(Tuber_oligospermum_JN392308:0.0,Tuber_oligospermum_JN392309:0.0):0.0):0.006592,(Tuber_oligospermum_JN392322:0.002206,(Tuber_oligospermum_JN392317:0.0,(Tuber_oligospermum_JN392319:0.0,(Tuber_oligospermum_JN392321:0.0,(Tuber_oligospermum_JN392323:0.00216,(Tuber_oligospermum_JN392320:0.0,(Tuber_oligospermum_JN392318:0.0,(Tuber_oligospermum_JN392316:0.0,(Tuber_oligospermum_JN392315:0.0,Tuber_oligospermum_JN392324:0.0):0.0):0.0):0.0):0.0):0.0):0.0):0.0):0.002183):0.004359):0.001905):0.021823):0.020382,((Tuber_cistophilum_JN392296:0.004335,(Tuber_cistophilum_JN392300:0.002164,(Tuber_cistophilum_JN392302:0.0,(Tuber_cistophilum_JN392301:0.0,(Tuber_cistophilum_JN392299:0.0,(Tuber_cistophilum_JN392298:0.0,(Tuber_cistophilum_JN392297:0.0,(Tuber_cistophilum_JN392295:0.0,(Tuber_cistophilum_JN392294:0.0,(Tuber_cistophilum_JN392292:0.0,Tuber_cistophilum_JN392293:0.0):0.0):0.0):0.0):0.0):0.0):0.0):0.0):0.0):0.0):0.016531,(((Tuber_californicum_AF127120:0.0,Tuber_californicum_AF156927:0.006625):0.030298,(Tuber_sphaerosporum_FJ809854:0.004369,(Tuber_sphaerosporum_FJ809853:0.0,Tuber_sphaerosporum_FJ809805:0.0):0.0):0.011999):0.007897,((Tuber_puberulum_AJ969626:0.0,Tuber_puberulum_AJ969625:0.0):0.010968,((Tuber_oligospermum_AY515306:0.002147,Tuber_borchii_AY515305:0.004387):0.004428,(Tuber_borchii_JN392291:0.0,(Tuber_borchii_FJ809852:0.0,Tuber_borchii_FJ809799:0.0):0.0):0.004386):0.002409):0.00722):0.0):0.0):0.092572):0.108859);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr55517]


END;