#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on March 28, 2024; 13:48 GMT TreeBASE (cc) 1994-2008 Study reference: Corl A., & Ellegren H. 2013. Sampling strategies for species trees: The effects on phylogenetic inference of the number of genes, number of individuals, and whether loci are mitochondrial, sex-linked, or autosomal. Molecular Phylogenetics and Evolution, 67: 358-366. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S13356] BEGIN TAXA; TITLE Shorebird_Taxa; DIMENSIONS NTAX=72; TAXLABELS Calidris_fuscicollis_11449_1 Calidris_fuscicollis_11449_2 Calidris_fuscicollis_11450_1 Calidris_fuscicollis_11450_2 Calidris_fuscicollis_11451_1 Calidris_fuscicollis_11451_2 Calidris_fuscicollis_11721_1 Calidris_fuscicollis_11721_2 Calidris_fuscicollis_11723_1 Calidris_fuscicollis_11723_2 Calidris_fuscicollis_11725_1 Calidris_fuscicollis_11725_2 Calidris_mauri_905_1 Calidris_mauri_905_2 Calidris_mauri_913_1 Calidris_mauri_913_2 Calidris_mauri_916_1 Calidris_mauri_916_2 Calidris_mauri_921_1 Calidris_mauri_921_2 Calidris_mauri_923_1 Calidris_mauri_923_2 Calidris_mauri_929_1 Calidris_mauri_929_2 Calidris_melanotos_11496_1 Calidris_melanotos_11496_2 Calidris_melanotos_11497_1 Calidris_melanotos_11497_2 Calidris_melanotos_11498_1 Calidris_melanotos_11498_2 Calidris_melanotos_11555_1 Calidris_melanotos_11555_2 Calidris_melanotos_14946_1 Calidris_melanotos_14946_2 Calidris_melanotos_14949_1 Calidris_melanotos_14949_2 Calidris_minutilla_11534_1 Calidris_minutilla_11534_2 Calidris_minutilla_11750_1 Calidris_minutilla_11750_2 Calidris_minutilla_11776_1 Calidris_minutilla_11776_2 Calidris_minutilla_11777_1 Calidris_minutilla_11777_2 Calidris_minutilla_11785_1 Calidris_minutilla_11785_2 Calidris_minutilla_14959_1 Calidris_minutilla_14959_2 Phalaropus_lobatus_11480_1 Phalaropus_lobatus_11480_2 Phalaropus_lobatus_11664_1 Phalaropus_lobatus_11664_2 Phalaropus_lobatus_11727_1 Phalaropus_lobatus_11727_2 Phalaropus_lobatus_11736_1 Phalaropus_lobatus_11736_2 Phalaropus_lobatus_14868_1 Phalaropus_lobatus_14868_2 Phalaropus_lobatus_14895_1 Phalaropus_lobatus_14895_2 Philomachus_pugnax_120_1 Philomachus_pugnax_120_2 Philomachus_pugnax_121_1 Philomachus_pugnax_121_2 Philomachus_pugnax_123_1 Philomachus_pugnax_123_2 Philomachus_pugnax_124_1 Philomachus_pugnax_124_2 Philomachus_pugnax_171_1 Philomachus_pugnax_171_2 Philomachus_pugnax_204_1 Philomachus_pugnax_204_2 ; END; BEGIN TREES; TITLE 'Locus_3.3_gene_tree'; LINK TAXA = Shorebird_Taxa; TREE 'Locus_3.3_gene_tree' = [&R] (((((((Calidris_melanotos_11497_2:3.1549866044256327,(Calidris_melanotos_11496_1:1.817835229468101,Calidris_melanotos_14946_1:1.8178352294681022):1.3371513749575312):1.6836236942957057,(((Calidris_melanotos_14949_1:0.6429927675155548,Calidris_melanotos_11498_1:0.6429927675155543):0.7625540498395902,Calidris_melanotos_11497_1:1.405546817355144):1.6263190863885397,(Calidris_melanotos_11496_2:0.978325044185449,(Calidris_melanotos_11498_2:0.3789748036172551,Calidris_melanotos_14949_2:0.3789748036172547):0.5993502405681942):2.053540859558235):1.8067443949776538):0.8462977087737587,((Calidris_melanotos_11555_2:0.7451010765181898,Calidris_melanotos_14946_2:0.7451010765181897):1.7429910497658245,Calidris_melanotos_11555_1:2.4880921262840148):3.196815881211082):3.541040949765443,((Calidris_mauri_923_2:3.541521645696894,(((Calidris_mauri_921_2:0.14292719901677434,Calidris_mauri_913_2:0.1429271990167743):0.3637221206109025,(Calidris_mauri_929_2:0.14216068198760665,Calidris_mauri_916_2:0.14216068198760645):0.36448863764007017):1.021326120271854,Calidris_mauri_929_1:1.527975439899531):2.0135462057973634):2.7270279542300044,((((Calidris_mauri_905_2:0.22619283174062282,Calidris_mauri_913_1:0.22619283174062252):0.2576002559039229,Calidris_mauri_921_1:0.4837930876445453):0.49459854472722775,Calidris_mauri_923_1:0.9783916323717738):1.0152779785881014,(Calidris_mauri_905_1:0.7445478905184576,Calidris_mauri_916_1:0.7445478905184575):1.2491217204414178):4.274879988967024):2.9573993573336406):3.0375945758755982,(((Calidris_fuscicollis_11449_2:2.2414287142031073,((Calidris_fuscicollis_11723_2:0.38171291595586304,Calidris_fuscicollis_11451_1:0.381712915955863):0.9508765057817367,(Calidris_fuscicollis_11450_2:0.38159021367046053,Calidris_fuscicollis_11721_1:0.3815902136704613):0.9509992080671383):0.9088392924655093):2.3895383518606774,(Calidris_fuscicollis_11451_2:2.27915134792677,(Calidris_fuscicollis_11721_2:1.5439811794598919,((Calidris_fuscicollis_11725_2:0.30941587233486195,Calidris_fuscicollis_11450_1:0.3094158723348624):0.7896164083938699,(Calidris_fuscicollis_11449_1:0.5630712025099428,(Calidris_fuscicollis_11723_1:0.30602203059956506,Calidris_fuscicollis_11725_1:0.30602203059956556):0.25704917191037696):0.5359610782187894):0.44494889873115917):0.7351701684668774):2.3518157181370154):4.982887034354816,((Calidris_minutilla_11777_2:2.0313487649481434,Calidris_minutilla_14959_2:2.0313487649481434):4.1107153744658795,((((Calidris_minutilla_11785_2:0.3946443269068342,Calidris_minutilla_11534_2:0.39464432690683376):0.6130104184781108,Calidris_minutilla_11750_2:1.0076547453849438):0.7844211967362809,Calidris_minutilla_11776_2:1.7920759421212253):1.6804070778448403,(((Calidris_minutilla_11776_1:0.25486446411607266,Calidris_minutilla_14959_1:0.2548644641160735):0.8023568753995749,((Calidris_minutilla_11750_1:0.256677233428044,Calidris_minutilla_11534_1:0.2566772334280439):0.19720599438141434,Calidris_minutilla_11777_1:0.4538832278094578):0.6033381117061899):0.9334172242615555,Calidris_minutilla_11785_1:1.9906385637772035):1.4818444561888617):2.669581119447958):3.47178996100458):2.6496894327175315):11.387539289469686,(((Philomachus_pugnax_120_2:0.09420697441416297,Philomachus_pugnax_204_2:0.09420697441416301):0.18705540870073611,(Philomachus_pugnax_121_2:0.09338397586320096,Philomachus_pugnax_120_1:0.09338397586320078):0.1878784072516977):1.2566203313273723,((((Philomachus_pugnax_171_1:0.09527399925798416,Philomachus_pugnax_123_1:0.09527399925798437):0.08786116525321483,Philomachus_pugnax_204_1:0.18313516451119927):0.15514981114943877,(Philomachus_pugnax_123_2:0.09404534771746617,Philomachus_pugnax_171_2:0.09404534771746605):0.2442396279431719):0.3195593267664339,(Philomachus_pugnax_124_2:0.18157101703928077,(Philomachus_pugnax_124_1:0.09476737466525714,Philomachus_pugnax_121_1:0.0947673746652566):0.08680364237402373):0.4762732853877914):0.8800384120151992):22.113200108163554):11.822203461634668,(((Phalaropus_lobatus_11736_2:3.246532998963123,Phalaropus_lobatus_11664_1:3.2465329989631226):2.680732075886419,Phalaropus_lobatus_14895_2:5.927265074849543):6.765553409922537,((Phalaropus_lobatus_14868_2:3.8082440542138847,Phalaropus_lobatus_14895_1:3.8082440542138847):5.912435701739133,((Phalaropus_lobatus_14868_1:4.424614416107549,Phalaropus_lobatus_11664_2:4.424614416107547):2.3222275346476264,(Phalaropus_lobatus_11727_2:4.150794493691134,(Phalaropus_lobatus_11736_1:3.1745383515189363,(Phalaropus_lobatus_11480_2:2.347532644315064,(Phalaropus_lobatus_11727_1:1.3936875834217832,Phalaropus_lobatus_11480_1:1.393687583421783):0.9538450608932816):0.8270057072038717):0.9762561421721987):2.596047457064042):2.973837805197838):2.972138728819065):22.780467799468415); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr57022] END;