#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 19, 2024; 4:50 GMT TreeBASE (cc) 1994-2008 Study reference: Alves A., Barradas C., Phillips A.J., & Correia A. 2012. Diversity of Botryosphaeriaceae species associated with conifers in Portugal. European Journal of Plant Pathology, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S13454] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=76; TAXLABELS Botryosphaeria_corticis_ATCC22927 Botryosphaeria_corticis_CBS119047 Botryosphaeria_dothidea_CAA127 Botryosphaeria_dothidea_CBS110302 Botryosphaeria_dothidea_CBS115476 Diplodia_cupressi_CAA027 Diplodia_cupressi_CAA029 Diplodia_cupressi_CBS168.87 Diplodia_cupressi_CBS261.85 Diplodia_mutila_CAA096 Diplodia_mutila_CAA115 Diplodia_mutila_CBS112553 Diplodia_mutila_CBS230.30 Diplodia_pinea_CAA015 Diplodia_pinea_CAA025 Diplodia_pinea_CAA068 Diplodia_pinea_CAA070 Diplodia_pinea_CBS109725 Diplodia_pinea_CBS393.84 Diplodia_scrobiculata_CBS109944 Diplodia_scrobiculata_CBS113423 Diplodia_seriata_CAA051 Diplodia_seriata_CAA108 Diplodia_seriata_CAP149 Diplodia_seriata_CBS112555 Diplodia_tsugae_CBS418.64 Dothiorella_iberica_CAA129 Dothiorella_iberica_CAA131 Dothiorella_iberica_CBS115035 Dothiorella_iberica_CBS115041 Dothiorella_sarmentorum_CAA125 Dothiorella_sarmentorum_CBS115038 Dothiorella_sarmentorum_IMI63581b Neofusicoccum_australe_CAA018 Neofusicoccum_australe_CAA031 Neofusicoccum_australe_CAA057 Neofusicoccum_australe_CAA073 Neofusicoccum_australe_CAA083 Neofusicoccum_australe_CAA090 Neofusicoccum_australe_CAA103 Neofusicoccum_australe_CAA112 Neofusicoccum_australe_CAA118 Neofusicoccum_australe_CMW6837 Neofusicoccum_batangarum_CBS124923 Neofusicoccum_batangarum_CBS124924 Neofusicoccum_cordaticola_CBS123634 Neofusicoccum_cordaticola_CBS123635 Neofusicoccum_kwambonambiense_CBS123639 Neofusicoccum_kwambonambiense_CBS123641 Neofusicoccum_luteum_CAA046 Neofusicoccum_luteum_CAA047 Neofusicoccum_luteum_CAA049 Neofusicoccum_luteum_CAA061 Neofusicoccum_luteum_CAA065 Neofusicoccum_luteum_CAA072 Neofusicoccum_luteum_CAA086 Neofusicoccum_luteum_CAA099 Neofusicoccum_luteum_CAA110 Neofusicoccum_luteum_CAA124 Neofusicoccum_luteum_CBS110299 Neofusicoccum_occulatum_MUCC227 Neofusicoccum_occulatum_MUCC286 Neofusicoccum_parvum_CAA022 Neofusicoccum_parvum_CAA074 Neofusicoccum_parvum_CAA107 Neofusicoccum_parvum_CAA126 Neofusicoccum_parvum_CBS110301 Neofusicoccum_parvum_CMW9081 Neofusicoccum_ribis_CBS115475 Neofusicoccum_ribis_CBS121.26 Neofusicoccum_umdonicola_CBS123645 Neofusicoccum_umdonicola_CBS123646 Phaeobotryon_cupressi_CAA030 Phaeobotryon_cupressi_CBS124700 Pseudofusicoccum_stromaticum_CBS117448 Pseudofusicoccum_stromaticum_CBS117449 ; END; BEGIN TREES; TITLE MPTs_from_ITS_analysis; LINK TAXA = Taxa; TREE PAUP_4 = [&R] (Pseudofusicoccum_stromaticum_CBS117448:0.0,Pseudofusicoccum_stromaticum_CBS117449:0.0,((((((Neofusicoccum_luteum_CAA061:0.0,Neofusicoccum_luteum_CBS110299:0.0,Neofusicoccum_luteum_CAA049:0.0,Neofusicoccum_luteum_CAA099:0.0,Neofusicoccum_luteum_CAA124:0.0,Neofusicoccum_luteum_CAA047:0.0,Neofusicoccum_luteum_CAA072:0.0,Neofusicoccum_luteum_CAA065:0.0,Neofusicoccum_luteum_CAA110:0.0,Neofusicoccum_luteum_CAA086:0.0,Neofusicoccum_luteum_CAA046:0.0):2.0,(Neofusicoccum_australe_CAA103:0.0,Neofusicoccum_australe_CAA090:0.0,Neofusicoccum_australe_CAA112:0.0,(Neofusicoccum_australe_CAA031:0.0,Neofusicoccum_australe_CMW6837:0.0,Neofusicoccum_australe_CAA018:0.0,Neofusicoccum_australe_CAA083:0.0,Neofusicoccum_australe_CAA057:0.0,Neofusicoccum_australe_CAA118:0.0,Neofusicoccum_australe_CAA073:0.0):1.0):1.0):5.0,((((Neofusicoccum_parvum_CAA022:0.0,Neofusicoccum_parvum_CBS110301:0.0,Neofusicoccum_parvum_CAA107:0.0,Neofusicoccum_parvum_CAA074:0.0):1.0,Neofusicoccum_parvum_CAA126:0.0,Neofusicoccum_parvum_CMW9081:1.0):1.0,((Neofusicoccum_umdonicola_CBS123645:0.0,Neofusicoccum_umdonicola_CBS123646:0.0):1.0,Neofusicoccum_ribis_CBS115475:0.0,Neofusicoccum_ribis_CBS121.26:0.0,Neofusicoccum_occulatum_MUCC286:0.0,Neofusicoccum_occulatum_MUCC227:0.0,(Neofusicoccum_batangarum_CBS124924:2.0,Neofusicoccum_batangarum_CBS124923:0.0):1.0):1.0,(Neofusicoccum_kwambonambiense_CBS123639:1.0,Neofusicoccum_kwambonambiense_CBS123641:1.0):2.0):1.0,(Neofusicoccum_cordaticola_CBS123634:0.0,Neofusicoccum_cordaticola_CBS123635:0.0):2.0):7.0):4.0,((Dothiorella_sarmentorum_CAA125:0.0,Dothiorella_sarmentorum_CBS115038:0.0,Dothiorella_sarmentorum_IMI63581b:0.0):3.0,(Dothiorella_iberica_CBS115041:0.0,Dothiorella_iberica_CBS115035:0.0,Dothiorella_iberica_CAA131:0.0,Dothiorella_iberica_CAA129:0.0):0.0):10.0):13.0,(((((Diplodia_mutila_CAA096:0.0,Diplodia_mutila_CAA115:0.0,Diplodia_mutila_CBS112553:0.0,Diplodia_mutila_CBS230.30:0.0):7.0,(Diplodia_cupressi_CAA029:0.0,Diplodia_cupressi_CBS168.87:0.0,Diplodia_cupressi_CBS261.85:0.0,Diplodia_cupressi_CAA027:1.0):6.0):4.0,Diplodia_tsugae_CBS418.64:7.0):6.0,((Diplodia_pinea_CAA070:0.0,Diplodia_pinea_CAA025:0.0,Diplodia_pinea_CAA068:0.0,Diplodia_pinea_CBS109725:0.0,Diplodia_pinea_CAA015:0.0,Diplodia_pinea_CBS393.84:0.0,(Diplodia_seriata_CAA051:0.0,Diplodia_seriata_CAA108:0.0,Diplodia_seriata_CAP149:0.0,Diplodia_seriata_CBS112555:0.0):3.0):1.0,(Diplodia_scrobiculata_CBS109944:0.0,Diplodia_scrobiculata_CBS113423:0.0):2.0):7.0):10.0,(Phaeobotryon_cupressi_CAA030:0.0,Phaeobotryon_cupressi_CBS124700:0.0):10.0):34.0):9.0,((Botryosphaeria_dothidea_CAA127:0.0,Botryosphaeria_dothidea_CBS110302:0.0,Botryosphaeria_dothidea_CBS115476:0.0):4.0,(Botryosphaeria_corticis_CBS119047:1.0,Botryosphaeria_corticis_ATCC22927:0.0):7.0):18.0):44.0); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr57801] END;