#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 21, 2024; 22:27 GMT TreeBASE (cc) 1994-2008 Study reference: Tan Y., Edwards J., Grice K.R., & Shivas R.G. 2012. Molecular phylogenetic analysis reveals six new species of Diaporthe from Australia. Fungal Diversity, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S13424] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=68; TAXLABELS Diaporthe_acaciigena_CBS_129521_JF951140 Diaporthe_alleghaniensis_CBS_495_72_FJ889444 Diaporthe_ambigua_CBS_114015_AF230767 Diaporthe_amygdali_CBS_126679_GQ281791 Diaporthe_angelicae_CBS_111592_AY196779 Diaporthe_aspalathi_CBS_117169_DQ286275 Diaporthe_australafricana_STE_U2655_AF230744 Diaporthe_beilharziae_BRIP_54792_JX862529 Diaporthe_canthii_CPC_19740_JX069864 Diaporthe_castaneae_mollissimae_DNP_128_JF957786 Diaporthe_caulivora_CBS_127268_HM347712 Diaporthe_cotoneastri_CBS_439_82_FJ889450 Diaporthe_crotalariae_CBS_162_33_FJ889445 Diaporthe_cuppatea_CBS_117499_AY339322 Diaporthe_cynaroidis_CBS_122676_EU552122 Diaporthe_fraxini_angustifoliae_BRIP_54781_JX862528 Diaporthe_gulyae_BRIP_54025_JF431299 Diaporthe_helianthi_CBS_592_81_AY705842 Diaporthe_hickoriae_CBS_145_26_FJ889446 Diaporthe_kochmanii_BRIP_54033_JF431295 Diaporthe_kongii_BRIP_54031_JF431301 Diaporthe_kyushuensis_STE_U2675_AF230749 Diaporthe_litchicola_BRIP_54900_JX862533 Diaporthe_longicolla_CBS_127267_HM347700 Diaporthe_lusitanicae_CBS_123212_EU814477 Diaporthe_melonis_CBS_507_78_FJ889447 Diaporthe_musigena_CBS_129519_JF951138 Diaporthe_neotheicola_CBS_123208_EU814480 Diaporthe_neoviticola_CBS_114016_AF230751 Diaporthe_nothofagi_BRIP_54801_JX862530 Diaporthe_novem_CBS_127270_HM347709 Diaporthe_pascoei_BRIP_54847_JX862532 Diaporthe_passiflorae_CPC_19183_JX069860 Diaporthe_perjuncta_CBS_109745_AY485785 Diaporthe_pterocarpi_MFLUCC_10_0571_JQ619899 Diaporthe_pterocarpicola_MFLUCC_10_058_JQ619887 Diaporthe_rhusicola_CBS_129528_JF951146 Diaporthe_salicicola_BRIP_54825_JX862531 Diaporthe_siamensis_JQ619879 Diaporthe_stewartii_CBS_193_36_FJ889448 Diaporthe_strumella_var_longispora_CBS_194_36_FJ889449 Diaporthe_thunbergii_MFLUCC_10_0576a_JQ619893 Diaporthe_vaccinii_CBS_160_32_AY952141 Diaporthe_viticola_CBS_113201_AY485750 Leucostoma_persoonii_DQ996042 Phomopsis_averrhoae_SCHM_3605_AY618930 Phomopsis_bougainvilleicola_SCHM_3006_AY601920 Phomopsis_camptothecae_SCHM_3611_AY622996 Phomopsis_chimonanthi_SCHM_3614_AY622993 Phomopsis_columnaris_CBS_109873_AF439625 Phomopsis_dauci_CBS_315_49_FJ889451 Phomopsis_emicis_BRIP_45089_JF957784 Phomopsis_eucommicola_SCHM_3607_AY578071 Phomopsis_eucommii_SCHM_0020_AY601921 Phomopsis_glabrae_SCHM_3622_AY601918 Phomopsis_lagerstroemiae_SCHM_3608_AY622994 Phomopsis_liquidambari_SCHM_3621_AY601919 Phomopsis_loropetali_SCHM_3615_AY601917 Phomopsis_magnoliae_SCHM_3609_AY622995 Phomopsis_maturitina_EU012334 Phomopsis_micheliae_SCHM_3603_AY620820 Phomopsis_phoenicicola_CBS_161_64_FJ889452 Phomopsis_phyllanthicola_SCHM_3680_AY620819 Phomopsis_saccharata_AF387817 Phomopsis_sclerotioides_CBS_296_67_AF439626 Phomopsis_subordinaria_CBS_104_84_GQ922519 Phomopsis_tuberivora_CBS_268_32_JF957785 Valsa_ceratosperma_DQ241769 ; END; BEGIN TREES; TITLE Diaporthe_its_1_ML2; LINK TAXA = Taxa; TREE 'PHYLIP 1+' = [&R] ((Leucostoma_persoonii_DQ996042:0.06902191,Valsa_ceratosperma_DQ241769:0.06678072):0.156356655,((Phomopsis_emicis_BRIP_45089_JF957784:0.12516053,(Diaporthe_australafricana_STE_U2655_AF230744:0.01486593,(Diaporthe_nothofagi_BRIP_54801_JX862530:0.01854536,(Diaporthe_cynaroidis_CBS_122676_EU552122:0.00332983,(Diaporthe_salicicola_BRIP_54825_JX862531:0.01025405,Diaporthe_viticola_CBS_113201_AY485750:0.00333486):1.0E-8):0.01618695):0.0):0.06943909):0.03426862,((Diaporthe_thunbergii_MFLUCC_10_0576a_JQ619893:0.06732859,(Phomopsis_eucommicola_SCHM_3607_AY578071:1.0E-8,(Diaporthe_cotoneastri_CBS_439_82_FJ889450:0.01922502,(Diaporthe_vaccinii_CBS_160_32_AY952141:0.01892374,(Diaporthe_alleghaniensis_CBS_495_72_FJ889444:0.01065291,(Diaporthe_castaneae_mollissimae_DNP_128_JF957786:0.01421545,Phomopsis_magnoliae_SCHM_3609_AY622995:0.00424855):0.00711608):0.00383981):0.0):0.05453023):0.03703853):0.04278475,(((Diaporthe_hickoriae_CBS_145_26_FJ889446:0.07544876,Phomopsis_saccharata_AF387817:0.10504622):0.02790355,((Diaporthe_neoviticola_CBS_114016_AF230751:0.03958879,(Diaporthe_aspalathi_CBS_117169_DQ286275:0.00663928,Diaporthe_crotalariae_CBS_162_33_FJ889445:0.01429371):0.04822832):0.01677483,(Diaporthe_perjuncta_CBS_109745_AY485785:0.04767113,((Phomopsis_averrhoae_SCHM_3605_AY618930:0.00885023,(Phomopsis_bougainvilleicola_SCHM_3006_AY601920:0.01484608,(Diaporthe_musigena_CBS_129519_JF951138:0.01157453,(Diaporthe_fraxini_angustifoliae_BRIP_54781_JX862528:0.01180543,(Diaporthe_litchicola_BRIP_54900_JX862533:0.00774036,Diaporthe_pascoei_BRIP_54847_JX862532:0.00417418):1.0E-8):5.5774E-4):0.01737959):0.01668358):0.08793346,((Diaporthe_pterocarpicola_MFLUCC_10_058_JQ619887:0.02246761,Phomopsis_liquidambari_SCHM_3621_AY601919:0.00800411):0.02515523,(Phomopsis_phoenicicola_CBS_161_64_FJ889452:1.0E-8,((Phomopsis_eucommii_SCHM_0020_AY601921:0.01232258,Phomopsis_lagerstroemiae_SCHM_3608_AY622994:0.00263621):0.03148385,(Phomopsis_maturitina_EU012334:0.03043321,(Phomopsis_loropetali_SCHM_3615_AY601917:1.0E-8,Phomopsis_phyllanthicola_SCHM_3680_AY620819:0.0165975):1.0E-8):0.01190061):0.0):0.01174227):0.02365923):0.06685194):0.01219774):0.0):0.03252752,((Diaporthe_passiflorae_CPC_19183_JX069860:0.09666992,(Diaporthe_acaciigena_CBS_129521_JF951140:0.06591393,Diaporthe_amygdali_CBS_126679_GQ281791:0.09314277):0.04024293):0.0,(Diaporthe_caulivora_CBS_127268_HM347712:0.03815804,((Diaporthe_canthii_CPC_19740_JX069864:0.04139071,(Diaporthe_pterocarpi_MFLUCC_10_0571_JQ619899:0.12994056,(Diaporthe_neotheicola_CBS_123208_EU814480:0.01541116,Diaporthe_rhusicola_CBS_129528_JF951146:1.0E-8):0.01685798):0.01247738):0.08393902,(Diaporthe_helianthi_CBS_592_81_AY705842:0.12170846,((Diaporthe_novem_CBS_127270_HM347709:1.0E-8,(Diaporthe_lusitanicae_CBS_123212_EU814477:0.01406683,(Diaporthe_beilharziae_BRIP_54792_JX862529:0.06455498,(Phomopsis_chimonanthi_SCHM_3614_AY622993:1.0E-8,Phomopsis_micheliae_SCHM_3603_AY620820:1.0E-8):0.00623):0.06692891):0.00560949):5.11E-6,((Diaporthe_melonis_CBS_507_78_FJ889447:0.0474417,((Diaporthe_gulyae_BRIP_54025_JF431299:0.00370922,Diaporthe_stewartii_CBS_193_36_FJ889448:0.00754962):1.0E-8,(Phomopsis_subordinaria_CBS_104_84_GQ922519:1.0E-8,(Diaporthe_angelicae_CBS_111592_AY196779:1.0E-8,Phomopsis_dauci_CBS_315_49_FJ889451:1.0E-8):0.0192604):0.00375866):2.04E-6):0.01550506,((Diaporthe_kongii_BRIP_54031_JF431301:0.01556748,(Diaporthe_ambigua_CBS_114015_AF230767:0.06136521,(Diaporthe_kochmanii_BRIP_54033_JF431295:1.0E-8,Phomopsis_camptothecae_SCHM_3611_AY622996:0.00382452):0.02011849):0.04053971):0.01332511,(Diaporthe_cuppatea_CBS_117499_AY339322:0.02879503,(Diaporthe_longicolla_CBS_127267_HM347700:0.02608162,((Diaporthe_kyushuensis_STE_U2675_AF230749:0.02877043,Diaporthe_siamensis_JQ619879:0.0112534):0.02294758,(Phomopsis_glabrae_SCHM_3622_AY601918:0.04047919,(Diaporthe_strumella_var_longispora_CBS_194_36_FJ889449:0.08983819,(Phomopsis_tuberivora_CBS_268_32_JF957785:0.03234413,(Phomopsis_columnaris_CBS_109873_AF439625:0.00448661,Phomopsis_sclerotioides_CBS_296_67_AF439626:0.03201161):0.00428327):0.02969387):0.04799799):0.02314864):0.04356606):0.02572698):0.0):0.00227992):0.02064886):0.05715718):0.05945943):0.03791301):0.02126803):0.0):0.0):0.0267576):0.156356655); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr58127] END;