#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 18, 2024; 19:47 GMT

TreeBASE (cc) 1994-2008

Study reference:
Sultana T., Kim J., Lee S., Han H., Kim S., Min G., Nadler S., & Park J. 2012. Comparative
analysis of complete mitochondrial genome sequences confirms independent
origins of plant-parasitic nematodes. BMC Evolutionary Biology, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S13609]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=43;
        TAXLABELS
            'Agamermis sp. BH-2006'
            Ancylostoma_caninum
            Ancylostoma_duodenale
            Anisakis_simplex
            Ascaris_suum
            Brugia_malayi
            Bursaphelenchus_xylophilus
            Caenorhabditis_briggsae
            Caenorhabditis_elegans
            Chabertia_ovina
            Cooperia_oncophora
            Cucullanus_robustus
            Dirofilaria_immitis
            Enterobius_vermicularis
            Haemonchus_contortus
            Heliconema_longissimum
            Heterodera_glycines
            Heterorhabditis_bacteriophora
            Hexamermis_agrotis
            Limulus_polyphemus
            Lithobius_forficatus
            Mecistocirrus_digitatus
            Metastrongylus_pudendotectus
            Necator_americanus
            Oesophagostomum_dentatum
            Onchocerca_volvulus
            Pratylenchus_vulnus
            Pristionchus_pacificus
            Radopholus_similis
            Romanomermis_culicivorax
            Setaria_digitata
            Steinernema_carpocapsae
            Strelkovimermis_spiculatus
            Strongyloides_stercoralis
            Strongylus_vulgaris
            Syngamus_trachea
            Teladorsagia_circumcincta
            Thaumamermis_cosgrovei
            Toxocara_malaysiensis
            Trichinella_spiralis
            Trichostrongylus_axei
            Wellcomia_siamensis
            Xiphinema_americanum
            ;
END;

BEGIN TREES;
      TITLE 43_NT_after_3rd_incl_BI;
      LINK TAXA = Taxa;
      TREE con_50_majrule = [&R] ((Lithobius_forficatus:0.521862,Limulus_polyphemus:0.551029)0.99:0.4493205,(Trichinella_spiralis:2.034409,((Xiphinema_americanum:1.792027,((Romanomermis_culicivorax:1.116607,Strelkovimermis_spiculatus:1.158907)0.98:0.246431,(Thaumamermis_cosgrovei:1.081331,('Agamermis sp. BH-2006':0.541892,Hexamermis_agrotis:0.39006):0.539812)1.00:0.133711)0.77:1.22734)0.99:0.216968,((Pratylenchus_vulnus:1.785619,(Heterodera_glycines:1.492635,Radopholus_similis:0.918939)0.99:0.323518)0.99:0.336817,(((Enterobius_vermicularis:0.355969,Wellcomia_siamensis:0.398299)0.99:0.417765,(Heliconema_longissimum:0.488137,(Setaria_digitata:0.110645,(Brugia_malayi:0.171679,(Dirofilaria_immitis:0.126357,Onchocerca_volvulus:0.086492)0.99:0.03212)0.99:0.039221)0.99:0.246827)0.99:0.733221)0.98:0.089746,(Strongyloides_stercoralis:0.44043,(Bursaphelenchus_xylophilus:0.672542,(Steinernema_carpocapsae:0.259835,((Cucullanus_robustus:0.437142,(Ascaris_suum:0.114609,(Anisakis_simplex:0.163065,Toxocara_malaysiensis:0.133193)0.99:0.028333)0.99:0.076936)0.99:0.062248,((Heterorhabditis_bacteriophora:0.19378,(Pristionchus_pacificus:0.212178,(Caenorhabditis_briggsae:0.091158,Caenorhabditis_elegans:0.111514)1.00:0.107007)0.99:0.059715)0.99:0.040113,(Metastrongylus_pudendotectus:0.399855,((Teladorsagia_circumcincta:0.180134,((Cooperia_oncophora:0.160931,Trichostrongylus_axei:0.208498)0.69:0.023678,(Haemonchus_contortus:0.167426,Mecistocirrus_digitatus:0.171309)1.00:0.0856)0.86:0.021875)0.99:0.086361,(Necator_americanus:0.1243,((Ancylostoma_caninum:0.071121,Ancylostoma_duodenale:0.0871)0.99:0.042014,((Chabertia_ovina:0.150249,Oesophagostomum_dentatum:0.109435)0.98:0.032963,(Strongylus_vulgaris:0.105255,Syngamus_trachea:0.200206)0.96:0.05119)0.94:0.022118)0.94:0.025515)0.94:0.030494)0.94:0.041897)0.94:0.065239)0.94:0.084107)0.82:0.030661)0.83:0.065618)0.94:0.079584)0.94:0.084319)0.94:0.264703)0.99:1.299828)0.82:0.316705)0.99:0.4493205);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr59098]


END;