#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 18, 2024; 14:37 GMT

TreeBASE (cc) 1994-2008

Study reference:
Tsykun T., Rigling D., & Prospero S. 2013. A new multilocus approach for a reliable
DNA-based identification of Armillaria species. Mycologia, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S13713]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=49;
        TAXLABELS
            Armillaria_borealis_A1
            Armillaria_borealis_A2
            Armillaria_borealis_A5
            Armillaria_borealis_A618
            Armillaria_borealis_A722
            Armillaria_borealis_BRNM699842
            'Armillaria cepistipes 900_10_12'
            'Armillaria cepistipes 94_46_01'
            Armillaria_cepistipes_B2
            Armillaria_cepistipes_B3
            Armillaria_cepistipes_B5
            Armillaria_cepistipes_BRNM706814
            Armillaria_cepistipes_C13AE
            Armillaria_cepistipes_C19AS2
            Armillaria_cepistipes_C5CS1
            Armillaria_cepistipes_S11AE
            Armillaria_cepistipes_Y16AE
            Armillaria_gallica_BRNM706835
            Armillaria_gallica_C1AS
            Armillaria_gallica_E4
            Armillaria_gallica_E5
            Armillaria_gallica_E6
            Armillaria_gallica_HY1
            Armillaria_gallica_HY2a
            Armillaria_gallica_NA13
            Armillaria_gallica_NA4
            Armillaria_gallica_Y11DS1
            Armillaria_gallica_Y7CS
            'Armillaria mellea 94_5'
            'Armillaria mellea A_12'
            Armillaria_mellea_D1
            Armillaria_mellea_D4
            Armillaria_mellea_D5
            Armillaria_mellea_HY3
            'Armillaria ostoyae 2002_66_03'
            Armillaria_ostoyae_BRNM706815
            Armillaria_ostoyae_C2
            Armillaria_ostoyae_C4
            Armillaria_ostoyae_C5
            Armillaria_ostoyae_D20
            Armillaria_ostoyae_HpAg1
            Armillaria_ostoyae_NC8
            Armillaria_ostoyae_Y17DS
            'Armillaria tabescens 96_1_8'
            'Armillaria tabescens 96_3_3'
            Armillaria_tabescens_HAt1S5
            Armillaria_tabescens_HAt2S5
            Armillaria_tabescens_HAt5S3
            Moniliophthora_roreri
            ;
END;

BEGIN TREES;
      TITLE MP_Armillaria_ITS;
      LINK TAXA = Taxa;
      TREE Fig._1B = [&R] (Moniliophthora_roreri:57.57142857,((('Armillaria mellea A_12':3.5,'Armillaria mellea 94_5':5.5)0.9114:8.25,((Armillaria_mellea_D1:0.33333333,Armillaria_mellea_D5:1.66666667)0.6543:1.33333333,(Armillaria_mellea_D4:1.0,Armillaria_mellea_HY3:1.0)0.8904:4.0)0.8278:8.01190476)0.7895:20.01190476,((('Armillaria tabescens 96_1_8':1.0,'Armillaria tabescens 96_3_3':0.0)0.9957:6.38095238,(Armillaria_tabescens_HAt1S5:0.0,(Armillaria_tabescens_HAt2S5:0.0,Armillaria_tabescens_HAt5S3:1.0)0.3362:0.0)1.0000:9.1547619)0.9998:16.73809524,(((Armillaria_ostoyae_BRNM706815:0.0,(Armillaria_ostoyae_C4:1.5,(Armillaria_ostoyae_HpAg1:0.5,(Armillaria_ostoyae_D20:0.0,(Armillaria_ostoyae_C5:0.0,Armillaria_ostoyae_Y17DS:0.0)0.5062:1.0)0.2947:0.5)0.6849:3.0)0.3833:0.5)0.6763:1.5,((Armillaria_ostoyae_C2:3.0,(Armillaria_ostoyae_NC8:1.0,'Armillaria ostoyae 2002_66_03':0.0)0.9011:3.0)0.2334:0.0,(Armillaria_borealis_A1:1.0,((Armillaria_borealis_A2:0.0,Armillaria_borealis_A5:0.0)0.0961:0.0,(Armillaria_borealis_A618:0.0,Armillaria_borealis_A722:0.0)0.0904:0.0)0.1566:0.0)0.6939:2.0)0.2942:1.0)0.2012:0.5,(Armillaria_borealis_BRNM699842:0.0,((Armillaria_gallica_Y11DS1:1.0,(Armillaria_gallica_BRNM706835:0.0,((Armillaria_gallica_E4:0.0,Armillaria_gallica_Y7CS:0.0)0.0415:0.0,((Armillaria_gallica_E6:2.0,Armillaria_gallica_HY2a:0.0)0.0411:0.0,(Armillaria_gallica_HY1:2.0,Armillaria_gallica_C1AS:0.0)0.0425:0.0)0.0177:0.0)0.0626:0.0)0.3282:0.5)0.3293:1.5,((Armillaria_gallica_NA4:3.75,('Armillaria cepistipes 94_46_01':4.0,('Armillaria cepistipes 900_10_12':0.0,(Armillaria_gallica_NA13:5.0,Armillaria_gallica_E5:3.0)0.1009:0.0)0.1019:0.0)0.2218:0.25)0.2180:2.0,(Armillaria_cepistipes_S11AE:0.0,(Armillaria_cepistipes_C5CS1:0.0,((Armillaria_cepistipes_B5:0.0,Armillaria_cepistipes_C19AS2:0.0)0.6178:1.0,((Armillaria_cepistipes_B2:0.0,Armillaria_cepistipes_Y16AE:0.0)0.6658:1.0,(Armillaria_cepistipes_C13AE:0.0,(Armillaria_cepistipes_B3:0.0,Armillaria_cepistipes_BRNM706814:0.0)0.1206:0.0)0.1337:0.0)0.1605:0.0)0.4173:1.41666667)0.2395:1.41666667)0.1732:0.91666667)0.0570:0.25)0.3282:1.5)0.3702:1.5)0.8451:8.30952381)0.9541:22.66666667):57.57142857);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr59356]


END;