#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 24, 2024; 2:58 GMT

TreeBASE (cc) 1994-2008

Study reference:
Suarez J., Herrera P.I., Martos F., Selosse M., Cruz D.J., & Kottke I. 2012. Unravelling
the high variability in the nrITS-5.8S sequences of Tulasnellaceae -- a
long lasting problem of the most important orchid mycorrhizal fungi. Fungal Diversity,
.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S13715]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=117;
        TAXLABELS
            Epulorhiza_sp._C0601_1_FJ594918
            Epulorhiza_sp._CBS_189_90_DQ278944
            Epulorhiza_sp._Tulasnella_sp._ex._Arachnis_Maggie_oei_Am8_AJ313442
            Tulasnella_calospora_CBS_326_47_AY373298
            Tulasnella_calospora_H0302_8_FJ613169
            Tulasnella_calospora_H0402_14_FJ613183
            Tulasnella_calospora_HUI0101_12_FJ613266
            Tulasnella_calospora_HUI0101_8_FJ613262
            Tulasnella_calospora_MAFF_P305801_DQ388041
            Tulasnella_calospora_MAFF_P305805_DQ388045
            Tulasnella_danica_specimen_voucher_KC_388_AY373297
            Tulasnella_sp_JTO307_DQ061111
            Tulasnella_sp_clone_DC54_C08_GU732341
            Tulasnella_sp._ex._Acianthus_pusillus_AY643806
            Tulasnella_sp._ex._Aneura_pinguis_GQ907059
            Tulasnella_sp._ex._Aneura_pinguis_clone_9570A_EU909343
            Tulasnella_sp._ex._Aneura_pinguis_clone_9573A_EU909346
            Tulasnella_sp._ex._Arachnis_Maggie_oei_AJ313444
            Tulasnella_sp._ex._Arundina_graminifolia_AJ313435
            Tulasnella_sp._ex._Cymbidium_faberi_FJ613194
            Tulasnella_sp._ex._Cymbidium_faberi_HM230646
            Tulasnella_sp._ex._Cymbidium_faberi_HM230649
            Tulasnella_sp._ex._Cymbidium_fabery_EF393625
            Tulasnella_sp._ex._Cymbidium_floribundum_EF393621
            Tulasnella_sp._ex._Cymbidium_goeringii_EF127682
            Tulasnella_sp._ex._Cymbidium_goeringii_EF393627
            Tulasnella_sp._ex._Cymbidium_goeringii_EF393631
            Tulasnella_sp._ex._Cymbidium_goeringii_HM230650
            Tulasnella_sp._ex._Cymbidium_goeringii_HM230652
            Tulasnella_sp._ex._Cymbidium_insigne_HQ889722
            Tulasnella_sp._ex._Cymbidium_sinense_EF393623
            Tulasnella_sp._ex._Cypripedium_irapeanum_JF313322
            Tulasnella_sp._ex._Dactylorhiza_incarnat_AM697909
            Tulasnella_sp._ex._Dendrobium_anosmum_GU166410
            Tulasnella_sp._ex._Dendrobium_crumenatun_AJ313438
            Tulasnella_sp._ex._Diplocaulobium_enosmum_AJ313446
            Tulasnella_sp._ex._Disperis_villosa_FJ788888
            Tulasnella_sp._ex._Elleanthus_sp_3TB2_1_HM451675
            Tulasnella_sp._ex._Epidendrum_rhopalostele_103_C053_JF346769
            Tulasnella_sp._ex._Epidendrum_rhopalostele_103_C055_JF346772
            Tulasnella_sp._ex._Epidendrum_rhopalostele_151_C097_JF346802
            Tulasnella_sp._ex._Epidendrum_rhopalostele_88_C036_JF346765
            Tulasnella_sp._ex._Epidendrum_rhopalostele_88_C038_JF346786
            Tulasnella_sp._ex._Epidendrum_rhopalostele_88_C039_JF346767
            Tulasnella_sp._ex._Epipactis_gigantea_AY634123
            Tulasnella_sp._ex._Epiphytic_orchid_4EF1_11_HM451720
            Tulasnella_sp._ex._Epiphytic_orchid_4EF1_8_HM451724
            Tulasnella_sp._ex._Epiphytic_orchid_4EH1_10_HM451737
            Tulasnella_sp._ex._Epiphytic_orchid_4EH1_9_a_HM451861
            Tulasnella_sp._ex._Goodyera_pubescens_AY373265
            Tulasnella_sp._ex._Goodyera_pubescens_AY373274
            Tulasnella_sp._ex._Hammarbya_paludosa_AM697907
            Tulasnella_sp._ex._Liparis_kumokiri_AB369940
            Tulasnella_sp._ex._Liparis_lilifolia_AY373288
            Tulasnella_sp._ex._Liparis_loeselii_AM697925
            Tulasnella_sp._ex._Maxilaria_sp_1EA2_4_HM451501
            Tulasnella_sp._ex._Maxilaria_sp_1TD2_9_HM451588
            Tulasnella_sp._ex._Maxillaria_sp_4TE1_3_HM451767
            Tulasnella_sp._ex._Maxillaria_sp_4TE1_6_HM451770
            Tulasnella_sp._ex._Microtis_parviflora_AY643804
            Tulasnella_sp._ex._Oncidium_varimyce_x_Oncidium_nona_AJ313447
            Tulasnella_sp._ex._Orchis_laxiflora_HQ834836
            Tulasnella_sp._ex._Orchis_militaris_AM711619
            Tulasnella_sp._ex._Paphiopedilum_armeniacum_FJ786658
            Tulasnella_sp._ex._Paphiopedilum_armeniacum_FJ786661
            Tulasnella_sp._ex._Paphiopedilum_micranthum_GQ241783
            Tulasnella_sp._ex._Paphiopedilum_micranthum_GQ241795
            Tulasnella_sp._ex._Paphiopedilum_micranthum_GQ241801
            Tulasnella_sp._ex._Paphiopedilum_micranthum_GQ241802
            Tulasnella_sp._ex._Paphiopedilum_micranthum_GQ241803
            Tulasnella_sp._ex._Paphiopedilum_micranthum_GQ241804
            Tulasnella_sp._ex._Paphiopedilum_micranthum_GQ241805
            Tulasnella_sp._ex._Paphiopedilum_micranthum_GQ241817
            Tulasnella_sp._ex._Paphiopedilum_micranthum_GQ241857
            Tulasnella_sp._ex._Paphiopedilum_micranthum_GQ241863
            Tulasnella_sp._ex._Paphiopedilum_sukhakulii_GU166403
            Tulasnella_sp._ex._Paphiopedilum_villosum_GU166406
            Tulasnella_sp._ex._Pecteilis_susannae_GQ856215
            Tulasnella_sp._ex._Pecteilis_susannae_GQ862346
            Tulasnella_sp._ex._Phaius_tancarvilleae_HM145897
            Tulasnella_sp._ex._Pleurothallis_sp_1EA2_2_HM451500
            Tulasnella_sp._ex._Pleurothallis_sp_1EA2_7_HM451503
            Tulasnella_sp._ex._Pleurothallis_sp_1EB2_3_HM451509
            Tulasnella_sp._ex._Pleurothallis_sp_1EB2_4_HM451510
            Tulasnella_sp._ex._Pleurothallis_sp_1EB2_6_HM451512
            Tulasnella_sp._ex._Pleurothallis_sp_1EH1_1_HM451554
            Tulasnella_sp._ex._Pleurothallis_sp_1TC2_7_HM451584
            Tulasnella_sp._ex._Pleurothallis_sp_4EA2_1_HM451711
            Tulasnella_sp._ex._Pterygodium_alatum_FJ788874
            Tulasnella_sp._ex._Pterygodium_alatum_FJ788889
            Tulasnella_sp._ex._Pterygodium_alatum_FJ788890
            Tulasnella_sp._ex._Pterygodium_catholicum_FJ788878
            Tulasnella_sp._ex._Pterygodium_catholicum_FJ788879
            Tulasnella_sp._ex._Pterygodium_catholicum_FJ788886
            Tulasnella_sp._ex._Pterygodium_volucris_FJ788877
            Tulasnella_sp._ex._Riccardia_multifida_clone_9694_EU909272
            Tulasnella_sp._ex._Riccardia_multifida_clone_9739_EU909265
            Tulasnella_sp._ex._Riccardia_multifida_clone_9746A_EU909333
            Tulasnella_sp._ex._Riccardia_palmata_clone_9809_EU909334
            Tulasnella_sp._ex._Spathaglotis_plicata_AJ313437
            Tulasnella_sp._ex._Spathaglotis_plicata_AJ313440
            Tulasnella_sp._ex._Spathaglotis_plicata_AJ313445
            Tulasnella_sp._ex._Spathaglotis_plicata_AJ313450
            Tulasnella_sp._ex._Spathaglotis_plicata_AJ313452
            Tulasnella_sp._ex._Spathaglotis_plicata_AJ313453
            Tulasnella_sp._ex._Stelis_concinna_9_7_DQ178092
            Tulasnella_sp._ex._Stelis_hallii_1_17_DQ178103
            Tulasnella_sp._ex._Stelis_sp_1EC3_4_HM451515
            Tulasnella_sp._ex._Stelis_sp_1ED2_4_HM451522
            Tulasnella_sp._ex._Stelis_sp_1EE1_2_HM451524
            Tulasnella_sp._ex._Stelis_sp_1EF2_6_HM451539
            Tulasnella_sp._ex._Stelis_sp_1TH1_2_HM451617
            Tulasnella_sp._ex._Stelis_sp_4EE1_2_HM451717
            Tulasnella_sp._ex._Tipularia_discolor_AY373301
            Tulasnella_sp._ex._Tipularia_discolor_AY373314
            Tulasnella_sp._ex._Vanda_miss_Joaquin_AJ313443
            Tulasnella_sp._ex._Vanilla_poitaei_DQ834401
            ;
END;

BEGIN TREES;
      TITLE Tulasnellaceae_Set_1_ITS1_ITS2;
      LINK TAXA = Taxa;
      TREE PAUP_1 = [&R] (((Tulasnella_sp._ex._Pterygodium_alatum_FJ788890:0.27524701,Tulasnella_sp._ex._Riccardia_palmata_clone_9809_EU909334:0.25505562):0.16844783,(Tulasnella_danica_specimen_voucher_KC_388_AY373297:0.12697735,(Epulorhiza_sp._CBS_189_90_DQ278944:0.01387722,Tulasnella_sp._ex._Cypripedium_irapeanum_JF313322:0.01660818):0.27354846):0.06159442):0.16775442,((Tulasnella_sp._ex._Pleurothallis_sp_1TC2_7_HM451584:0.00724885,(Tulasnella_sp._ex._Elleanthus_sp_3TB2_1_HM451675:0.0149699,((Tulasnella_sp._ex._Pleurothallis_sp_1EB2_6_HM451512:0.05335488,(Tulasnella_sp._ex._Pleurothallis_sp_1EB2_3_HM451509:0.01024894,Tulasnella_sp._ex._Pleurothallis_sp_1EB2_4_HM451510:1.0E-8):4.0438E-4):0.02688679,(Tulasnella_sp._ex._Epiphytic_orchid_4EH1_10_HM451737:0.00557618,(Tulasnella_sp._ex._Stelis_sp_1TH1_2_HM451617:0.00344747,(Tulasnella_sp._ex._Stelis_sp_1EE1_2_HM451524:1.0E-8,Tulasnella_sp._ex._Stelis_sp_4EE1_2_HM451717:0.00342109):1.0E-8):0.0013312):0.04025574):0.0754138):0.09395279):0.09992921,(Tulasnella_sp._ex._Vanda_miss_Joaquin_AJ313443:0.21702591,(Tulasnella_sp._ex._Dendrobium_crumenatun_AJ313438:0.16486483,(((((Tulasnella_sp._ex._Cymbidium_fabery_EF393625:0.02035326,Tulasnella_sp._ex._Cymbidium_goeringii_HM230652:0.03704669):0.02148427,(Tulasnella_sp._ex._Tipularia_discolor_AY373301:0.04222344,((Tulasnella_sp._ex._Riccardia_multifida_clone_9739_EU909265:0.00644162,Tulasnella_sp._ex._Riccardia_multifida_clone_9746A_EU909333:1.0E-8):0.0,(Tulasnella_sp._ex._Aneura_pinguis_GQ907059:0.0362975,(Tulasnella_sp._ex._Aneura_pinguis_clone_9570A_EU909343:1.0E-8,Tulasnella_sp._ex._Aneura_pinguis_clone_9573A_EU909346:0.02193755):0.00499736):0.0199338):0.03676179):0.00623935):0.00821491,(Tulasnella_sp._ex._Cymbidium_insigne_HQ889722:0.03463569,(Tulasnella_sp._ex._Cymbidium_goeringii_EF127682:0.03728145,((Tulasnella_sp._ex._Tipularia_discolor_AY373314:0.02149982,(Tulasnella_sp._ex._Goodyera_pubescens_AY373274:0.03858671,(Tulasnella_sp._ex._Goodyera_pubescens_AY373265:0.00987848,Tulasnella_sp._ex._Hammarbya_paludosa_AM697907:0.00472325):0.00441891):0.0):0.02186289,(Tulasnella_sp._ex._Paphiopedilum_micranthum_GQ241857:0.02313487,(Tulasnella_sp._ex._Cymbidium_floribundum_EF393621:1.0E-8,(Tulasnella_sp._ex._Microtis_parviflora_AY643804:0.00854186,(Tulasnella_sp._ex._Cymbidium_faberi_HM230649:0.00334276,(Tulasnella_calospora_H0402_14_FJ613183:0.00326966,(Tulasnella_calospora_H0302_8_FJ613169:0.03081628,Tulasnella_calospora_HUI0101_12_FJ613266:0.00309397):0.00357555):0.00329087):0.01000154):0.00841243):0.00548766):0.0167989):0.00192205):0.00310594):0.01511277):0.02131332,(Tulasnella_sp_clone_DC54_C08_GU732341:0.11575478,(((Tulasnella_sp._ex._Pterygodium_alatum_FJ788874:0.00309973,(Tulasnella_sp._ex._Pterygodium_catholicum_FJ788879:0.00313235,(Tulasnella_sp._ex._Pterygodium_catholicum_FJ788878:0.00309472,Tulasnella_sp._ex._Pterygodium_volucris_FJ788877:0.00312702):0.00310281):0.00311944):0.02212033,((Tulasnella_sp._ex._Epidendrum_rhopalostele_103_C055_JF346772:0.00915507,(Tulasnella_sp._ex._Epidendrum_rhopalostele_103_C053_JF346769:0.00610461,Tulasnella_sp._ex._Epidendrum_rhopalostele_151_C097_JF346802:0.00300624):0.00607144):0.00304281,(Tulasnella_sp._ex._Epidendrum_rhopalostele_88_C038_JF346786:0.00301964,(Tulasnella_sp._ex._Epidendrum_rhopalostele_88_C036_JF346765:0.06503984,Tulasnella_sp._ex._Epidendrum_rhopalostele_88_C039_JF346767:1.0E-8):0.0094927):1.0E-8):0.04024258):0.0284724,((Tulasnella_sp._ex._Pleurothallis_sp_1EA2_7_HM451503:0.0125179,(Tulasnella_sp._ex._Epiphytic_orchid_4EH1_9_a_HM451861:0.00930995,Tulasnella_sp._ex._Maxilaria_sp_1EA2_4_HM451501:0.00628471):0.00310628):1.0E-8,(((Tulasnella_sp._ex._Pleurothallis_sp_1EA2_2_HM451500:0.10900489,Tulasnella_sp._ex._Pleurothallis_sp_1EH1_1_HM451554:1.0E-8):0.00326087,(Tulasnella_sp._ex._Stelis_sp_1EF2_6_HM451539:0.00617662,(Tulasnella_sp._ex._Pleurothallis_sp_4EA2_1_HM451711:0.00618358,Tulasnella_sp._ex._Stelis_hallii_1_17_DQ178103:1.0E-8):1.0E-8):0.00307794):1.0E-8,(Tulasnella_sp._ex._Epiphytic_orchid_4EF1_8_HM451724:0.00928664,((Tulasnella_sp._ex._Maxilaria_sp_1TD2_9_HM451588:0.00308545,(Tulasnella_sp._ex._Maxillaria_sp_4TE1_3_HM451767:0.00307625,Tulasnella_sp._ex._Maxillaria_sp_4TE1_6_HM451770:1.0E-8):0.00621474):0.00304638,(Tulasnella_sp._ex._Epiphytic_orchid_4EF1_11_HM451720:0.00307485,(Tulasnella_sp._ex._Stelis_sp_1ED2_4_HM451522:0.00928554,(Tulasnella_sp._ex._Stelis_concinna_9_7_DQ178092:1.0E-8,Tulasnella_sp._ex._Stelis_sp_1EC3_4_HM451515:0.01241966):0.0):0.0030894):0.00624056):1.0E-8):0.00306689):0.00939072):0.02319277):0.0):0.0120322):0.07575064,((((Tulasnella_sp._ex._Spathaglotis_plicata_AJ313452:0.0068674,Tulasnella_sp._ex._Spathaglotis_plicata_AJ313453:1.0E-8):0.06000339,((Tulasnella_sp._ex._Oncidium_varimyce_x_Oncidium_nona_AJ313447:0.0878623,(Tulasnella_sp._ex._Liparis_lilifolia_AY373288:0.00166444,Tulasnella_sp._ex._Riccardia_multifida_clone_9694_EU909272:0.02547218):0.04932019):0.0102078,(Tulasnella_sp._ex._Cymbidium_goeringii_EF393627:0.00309843,(Tulasnella_sp._ex._Phaius_tancarvilleae_HM145897:0.00648022,(Tulasnella_sp._ex._Pecteilis_susannae_GQ856215:0.49305879,Tulasnella_sp._ex._Pecteilis_susannae_GQ862346:0.11389518):0.0368714):0.02552076):0.00560447):0.00693726):0.02623251,((Tulasnella_sp._ex._Arachnis_Maggie_oei_AJ313444:0.04355055,(Tulasnella_sp._ex._Spathaglotis_plicata_AJ313437:0.03415518,(Tulasnella_sp._ex._Paphiopedilum_armeniacum_FJ786658:1.0E-8,Tulasnella_sp._ex._Paphiopedilum_micranthum_GQ241795:0.00960964):0.03240918):0.0015493):0.00452259,((Epulorhiza_sp._Tulasnella_sp._ex._Arachnis_Maggie_oei_Am8_AJ313442:0.0396823,Tulasnella_sp._ex._Paphiopedilum_micranthum_GQ241801:0.01480342):0.01213477,(Tulasnella_sp._ex._Cymbidium_faberi_FJ613194:0.03892482,(Tulasnella_sp._ex._Paphiopedilum_micranthum_GQ241805:0.03173699,(Tulasnella_sp._ex._Paphiopedilum_micranthum_GQ241804:0.01726077,(Tulasnella_sp._ex._Paphiopedilum_micranthum_GQ241802:0.00684277,(Tulasnella_sp._ex._Paphiopedilum_armeniacum_FJ786661:0.01779295,Tulasnella_sp._ex._Paphiopedilum_micranthum_GQ241803:0.01421188):0.00299074):1.0E-8):0.00348325):0.0):0.00472713):0.0437905):0.01291907):0.03828735,((Tulasnella_sp._ex._Paphiopedilum_micranthum_GQ241863:0.0088704,(Tulasnella_sp._ex._Dendrobium_anosmum_GU166410:0.02870194,(((Tulasnella_sp._ex._Cymbidium_goeringii_HM230650:0.01203255,(Epulorhiza_sp._C0601_1_FJ594918:0.00577085,Tulasnella_sp._ex._Cymbidium_faberi_HM230646:0.02040302):0.02002694):0.00417128,(Tulasnella_sp._ex._Paphiopedilum_villosum_GU166406:0.00634546,(Tulasnella_sp._ex._Spathaglotis_plicata_AJ313440:0.00943627,Tulasnella_sp._ex._Spathaglotis_plicata_AJ313445:0.00957576):0.00646249):0.00816191):0.0076782,((Tulasnella_sp._ex._Diplocaulobium_enosmum_AJ313446:0.00940106,(Tulasnella_sp._ex._Liparis_loeselii_AM697925:1.0E-8,Tulasnella_sp._ex._Orchis_laxiflora_HQ834836:0.02894586):0.0):0.0033029,(Tulasnella_sp._ex._Paphiopedilum_sukhakulii_GU166403:0.0130435,(Tulasnella_sp._ex._Orchis_militaris_AM711619:1.0E-8,(Tulasnella_calospora_HUI0101_8_FJ613262:0.0031122,(Tulasnella_sp._ex._Paphiopedilum_micranthum_GQ241783:0.00622712,Tulasnella_sp._ex._Paphiopedilum_micranthum_GQ241817:0.00630843):0.00316943):1.0E-8):0.00295933):1.0E-8):0.0):0.01310023):0.01793402):0.0,((Tulasnella_sp._ex._Pterygodium_catholicum_FJ788886:0.04481832,(Tulasnella_sp._ex._Dactylorhiza_incarnat_AM697909:0.02271605,((Tulasnella_sp._ex._Arundina_graminifolia_AJ313435:0.01660597,Tulasnella_sp._ex._Vanilla_poitaei_DQ834401:0.00659891):0.01014297,(Tulasnella_sp._ex._Cymbidium_sinense_EF393623:0.01001064,Tulasnella_sp._ex._Spathaglotis_plicata_AJ313450:0.02701044):0.01249628):0.03394711):0.00313797):0.00665543,(Tulasnella_calospora_MAFF_P305801_DQ388041:0.01778606,(Tulasnella_sp._ex._Disperis_villosa_FJ788888:0.02721029,(Tulasnella_calospora_CBS_326_47_AY373298:0.01337445,((Tulasnella_sp._ex._Epipactis_gigantea_AY634123:0.00907217,Tulasnella_sp_JTO307_DQ061111:0.03050418):0.00837531,((Tulasnella_sp._ex._Acianthus_pusillus_AY643806:0.00329979,Tulasnella_calospora_MAFF_P305805_DQ388045:0.00615774):0.0,(Tulasnella_sp._ex._Pterygodium_alatum_FJ788889:0.01345289,(Tulasnella_sp._ex._Cymbidium_goeringii_EF393631:0.00668913,Tulasnella_sp._ex._Liparis_kumokiri_AB369940:0.00333745):0.00325195):0.00400215):0.00333442):0.00675635):0.0):0.00251507):0.02833461):0.01202572):0.05469463):0.02959669):0.00754613):0.0):0.10543453):0.16775442);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr59366]


END;