#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 19, 2024; 15:08 GMT

TreeBASE (cc) 1994-2008

Study reference:
Aguilera F., Mcdougall C., & Degnan B.M. 2013. Origin, evolution and classification
of type-3 copper proteins: Lineage-specific gene expansions and losses across
the Metazoa. BMC Evolutionary Biology, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S13985]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=35;
        TAXLABELS
            Amphimedon_queenslandica_tyr
            Anopheles_gambiae_tyr1
            Anopheles_gambiae_tyr2
            Anopheles_gambiae_tyr3
            Anopheles_gambiae_tyr4
            Anopheles_gambiae_tyr5
            Anopheles_gambiae_tyr6
            Anopheles_gambiae_tyr7
            Anopheles_gambiae_tyr8
            Anopheles_gambiae_tyr9
            Aspergillus_nidulans_tyr1
            Aspergillus_nidulans_tyr2
            Bombyx_mori_tyr1
            Bombyx_mori_tyr2
            Ciona_intestinalis_tyr1
            Ciona_intestinalis_tyr2
            Ciona_intestinalis_tyr3
            'Ciona_intestinalis tyr4'
            Daphnia_pulex_tyr
            Dictyostelium_fasciculatum_tyr
            Drosophila_melanogaster_tyr1
            Drosophila_melanogaster_tyr2
            Drosophila_melanogaster_tyr3
            Epiperipatus_sp_Hc
            Euphrynichus_bacillifer_HcA
            Euphrynichus_bacillifer_HcB
            Limulus_polyphemus_HcA
            Limulus_polyphemus_HcB
            Mastigoproctus_giganteus_HcA
            Mastigoproctus_giganteus_HcB
            Polysphondylium_pallidum_tyr2
            Saccoglossus_kowaleksii_Hc
            Tribolium_castaneum_tyr1
            Tribolium_castaneum_tyr2
            Tribolium_castaneum_tyr3
            ;
END;

BEGIN TREES;
      TITLE Beta_ML;
      LINK TAXA = Taxa;
      TREE bootstrap_27 = [&R] ((((((((((Tribolium_castaneum_tyr1:0.212968,Bombyx_mori_tyr2:0.500273):0.116684,(Tribolium_castaneum_tyr2:0.0,Tribolium_castaneum_tyr3:0.005425):0.165131):0.022771,(Bombyx_mori_tyr1:0.519498,((Anopheles_gambiae_tyr1:0.389783,Drosophila_melanogaster_tyr2:0.069679):0.144392,Drosophila_melanogaster_tyr1:0.185182):0.086456):0.05531):0.178483,((((Anopheles_gambiae_tyr9:0.33873,((Anopheles_gambiae_tyr2:0.232575,Anopheles_gambiae_tyr8:0.13832):0.179549,(Anopheles_gambiae_tyr6:0.346113,Anopheles_gambiae_tyr3:0.218969):0.171562):0.076354):0.075891,(Anopheles_gambiae_tyr5:0.060013,Anopheles_gambiae_tyr7:0.104268):0.175479):0.105071,Anopheles_gambiae_tyr4:0.18604):0.042235,Drosophila_melanogaster_tyr3:0.399899):0.124014):0.203012,(Daphnia_pulex_tyr:0.526811,Epiperipatus_sp_Hc:0.643487):0.202164):0.146603,((((Mastigoproctus_giganteus_HcA:0.215424,Euphrynichus_bacillifer_HcA:0.118852):0.115521,(Euphrynichus_bacillifer_HcB:0.198225,Mastigoproctus_giganteus_HcB:0.145983):0.147711):0.110914,Limulus_polyphemus_HcA:0.226857):0.161568,Limulus_polyphemus_HcB:0.280317):0.213113):0.314091,(Polysphondylium_pallidum_tyr2:0.190665,Dictyostelium_fasciculatum_tyr:0.171322):0.965779):0.299125,(((('Ciona_intestinalis tyr4':0.0,Ciona_intestinalis_tyr3:0.0):0.023899,Ciona_intestinalis_tyr2:1.0E-6):0.930219,Ciona_intestinalis_tyr1:0.510928):0.229321,Saccoglossus_kowaleksii_Hc:0.518925):0.976263):0.65452,Amphimedon_queenslandica_tyr:0.624294):1.030566,Aspergillus_nidulans_tyr2:0.0,Aspergillus_nidulans_tyr1:0.0);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr61755]


END;