#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 29, 2024; 9:37 GMT TreeBASE (cc) 1994-2008 Study reference: Udayanga D., Castlebury L., Rossman A., & Hyde K.D. 2013. Species limits in Diaporthe: molecular re-assessment of D. citri, D. cytosporella, D. foeniculina and D. rudis. Persoonia, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S14141] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=125; TAXLABELS Diaporthe_alleghaniensis_CBS495_72 Diaporthe_ampelina_CBS114016 Diaporthe_ampelina_DLR1_19 Diaporthe_canthii_JX069864 Diaporthe_citri_AR2807 Diaporthe_citri_AR3403 Diaporthe_citri_AR3404 Diaporthe_citri_AR3405 Diaporthe_citri_AR3406 Diaporthe_citri_AR3407 Diaporthe_citri_AR4350 Diaporthe_citri_AR4364 Diaporthe_citri_AR4370 Diaporthe_citri_AR4469 Diaporthe_citri_AR4470 Diaporthe_citri_AR4471 Diaporthe_citri_AR4472 Diaporthe_citri_AR4473 Diaporthe_citri_CT003 Diaporthe_citri_DA103 Diaporthe_citri_FAU583 Diaporthe_citri_ICMP10355 Diaporthe_citri_ICMP6981 Diaporthe_cotoneastri_CBS439_82 Diaporthe_cotoneastri_DP0667 Diaporthe_cytosporella_AR5148 Diaporthe_cytosporella_AR5149 Diaporthe_cytosporella_AY745085 Diaporthe_cytosporella_FAU461 Diaporthe_cytosporella_FJ794470 Diaporthe_foeniculina_AR3607 Diaporthe_foeniculina_AR5142 Diaporthe_foeniculina_AR5143 Diaporthe_foeniculina_AR5144 Diaporthe_foeniculina_AR5145 Diaporthe_foeniculina_AR5146 Diaporthe_foeniculina_AR5147 Diaporthe_foeniculina_AR5150 Diaporthe_foeniculina_AR5151 Diaporthe_foeniculina_AR5152 Diaporthe_foeniculina_CBS_187_27 Diaporthe_foeniculina_CBS123208 Diaporthe_foeniculina_DP0391 Diaporthe_foeniculina_DP0392 Diaporthe_foeniculina_DQ286287 Diaporthe_foeniculina_EU814480 Diaporthe_foeniculina_FAU460 Diaporthe_foeniculina_FAU462 Diaporthe_foeniculina_GQ250192 Diaporthe_foeniculina_GQ250193 Diaporthe_foeniculina_GQ250194 Diaporthe_foeniculina_GQ250195 Diaporthe_foeniculina_GQ250196 Diaporthe_foeniculina_GQ250197 Diaporthe_foeniculina_GQ250198 Diaporthe_foeniculina_GQ281796 Diaporthe_foeniculina_GQ281798 Diaporthe_foeniculina_GQ281800 Diaporthe_foeniculina_GQ281807 Diaporthe_foeniculina_GQ281809 Diaporthe_foeniculina_HM575422 Diaporthe_foeniculina_ICMP11892 Diaporthe_foeniculina_ICMP12285 Diaporthe_foeniculina_ICMP6970 Diaporthe_foeniculina_ICMP6986 Diaporthe_foeniculina_ICMP6987 Diaporthe_foeniculina_JF514346 Diaporthe_foeniculina_JF921871 Diaporthe_foeniculina_JQ038886 Diaporthe_foeniculina_JQ807454 Diaporthe_foeniculina_JQ807455 Diaporthe_foeniculina_JQ807456 Diaporthe_foeniculina_JQ807462 Diaporthe_foeniculina_JQ809272 Diaporthe_foeniculina_KC149969 Diaporthe_foeniculina_MEP12891 Diaporthe_pterocarpi_MFLUCC10571 Diaporthe_pterocarpi_MFLUCC10575 Diaporthe_pterocarpi_MFLUCC10588 Diaporthe_pterocarpicola_MFLUCC10580a Diaporthe_pterocarpicola_MFLUCC10580b Diaporthe_rhusicola_JF951146 Diaporthe_rudis_AF230744 Diaporthe_rudis_AR3422 Diaporthe_rudis_AR3478 Diaporthe_rudis_AR3646 Diaporthe_rudis_ARS3654 Diaporthe_rudis_AY485750 Diaporthe_rudis_AY485751 Diaporthe_rudis_CBS113201 Diaporthe_rudis_CBS122676 Diaporthe_rudis_DA243 Diaporthe_rudis_DA244 Diaporthe_rudis_DP0350 Diaporthe_rudis_DP0423 Diaporthe_rudis_DPG01 Diaporthe_rudis_DPG02 Diaporthe_rudis_EF155490 Diaporthe_rudis_ER285A Diaporthe_rudis_ER286C Diaporthe_rudis_ER286D Diaporthe_rudis_FJ228188 Diaporthe_rudis_FN386282 Diaporthe_rudis_FR667995 Diaporthe_rudis_GQ250199 Diaporthe_rudis_GQ250200 Diaporthe_rudis_HQ166424 Diaporthe_rudis_ICMP12522 Diaporthe_rudis_ICMP16419 Diaporthe_rudis_ICMP7025 Diaporthe_rudis_JQ045712 Diaporthe_rudis_JQ619896 Diaporthe_rudis_JQ619897 Diaporthe_rudis_JQ765660 Diaporthe_rudis_JQ807470 Diaporthe_rudis_JX316218 Diaporthe_thunbergii_MFLUCC10576a Diaporthe_thunbergii_MFLUCC10576b Diaporthe_thunbergii_MFLUCC10576c Diaporthe_vaccinii_CBS168_32 Diaporthe_vaccinii_DF5032 Diaporthe_vaccinii_FAU446 Diaporthe_vaccinii_FAU468 Diaporthe_vaccinii_FAU633 diaporthe_foeniculina_HM575421 ; END; BEGIN TREES; TITLE ITS_parsimony; LINK TAXA = Taxa; TREE PAUP_1 = [&R] ((Diaporthe_ampelina_DLR1_19:0.0,Diaporthe_ampelina_CBS114016:0.0):6.5,((Diaporthe_citri_AR4350:0.0,Diaporthe_citri_AR3403:1.0,Diaporthe_citri_AR4470:0.0,Diaporthe_citri_AR4472:0.0,Diaporthe_citri_FAU583:0.0,Diaporthe_citri_AR3407:0.0,Diaporthe_citri_AR4471:0.0,Diaporthe_citri_AR4473:0.0,Diaporthe_citri_AR2807:0.0,(Diaporthe_citri_AR4364:0.0,Diaporthe_citri_AR4370:0.0):1.0,(Diaporthe_citri_CT003:0.0,Diaporthe_citri_DA103:0.0,(Diaporthe_citri_AR3404:0.0,Diaporthe_citri_AR3405:0.0,Diaporthe_citri_AR4469:0.0,Diaporthe_citri_AR3406:0.0,Diaporthe_citri_ICMP10355:0.0,Diaporthe_citri_ICMP6981:0.0):1.0):1.0):7.0,(((Diaporthe_pterocarpicola_MFLUCC10580a:0.0,Diaporthe_pterocarpicola_MFLUCC10580b:0.0):9.0,(Diaporthe_thunbergii_MFLUCC10576a:0.0,Diaporthe_thunbergii_MFLUCC10576b:0.0,Diaporthe_thunbergii_MFLUCC10576c:0.0):9.0):7.0,((((Diaporthe_cotoneastri_DP0667:0.0,Diaporthe_cotoneastri_CBS439_82:0.0):8.0,(Diaporthe_alleghaniensis_CBS495_72:3.0,(Diaporthe_vaccinii_DF5032:2.0,Diaporthe_vaccinii_CBS168_32:0.0,(Diaporthe_vaccinii_FAU446:1.0,Diaporthe_vaccinii_FAU633:2.0,Diaporthe_vaccinii_FAU468:0.0):2.0):4.0):2.0):8.0,((Diaporthe_rudis_JX316218:0.0,Diaporthe_rudis_JQ045712:0.0,Diaporthe_rudis_JQ807470:0.0,Diaporthe_rudis_AF230744:0.0):5.0,(Diaporthe_rudis_CBS113201:0.0,Diaporthe_rudis_AY485750:0.0,Diaporthe_rudis_AY485751:0.0,Diaporthe_rudis_JQ765660:0.0,Diaporthe_rudis_DPG02:0.0,Diaporthe_rudis_DPG01:0.0,Diaporthe_rudis_CBS122676:1.0,Diaporthe_rudis_AR3422:0.0,Diaporthe_rudis_AR3646:0.0,Diaporthe_rudis_JQ619896:0.0,Diaporthe_rudis_JQ619897:0.0,Diaporthe_rudis_AR3478:0.0,Diaporthe_rudis_GQ250200:0.0,Diaporthe_rudis_GQ250199:0.0,Diaporthe_rudis_FN386282:0.0,Diaporthe_rudis_EF155490:0.0,Diaporthe_rudis_FJ228188:0.0,Diaporthe_rudis_ER285A:0.0,Diaporthe_rudis_ER286C:0.0,Diaporthe_rudis_ER286D:0.0,Diaporthe_rudis_DP0350:0.0,Diaporthe_rudis_DP0423:0.0,Diaporthe_rudis_ICMP12522:0.0,Diaporthe_rudis_ICMP16419:0.0,Diaporthe_rudis_ARS3654:1.0,Diaporthe_rudis_ICMP7025:2.0,Diaporthe_rudis_FR667995:0.0,Diaporthe_rudis_HQ166424:0.0,(Diaporthe_rudis_DA243:0.0,Diaporthe_rudis_DA244:0.0):1.0):3.0):15.0):13.0,(((Diaporthe_canthii_JX069864:11.0,(Diaporthe_pterocarpi_MFLUCC10575:0.0,Diaporthe_pterocarpi_MFLUCC10571:0.0,Diaporthe_pterocarpi_MFLUCC10588:1.0):13.0):3.0,(Diaporthe_cytosporella_AY745085:0.0,(Diaporthe_cytosporella_AR5148:0.0,Diaporthe_cytosporella_FAU461:0.0,Diaporthe_cytosporella_AR5149:0.0,Diaporthe_cytosporella_FJ794470:0.0):1.0):5.0):2.0,(Diaporthe_foeniculina_JQ038886:0.0,Diaporthe_foeniculina_DQ286287:0.0,Diaporthe_foeniculina_JQ807455:0.0,((diaporthe_foeniculina_HM575421:0.0,(Diaporthe_foeniculina_CBS123208:1.0,(Diaporthe_foeniculina_JF514346:0.0,Diaporthe_foeniculina_CBS_187_27:0.0):1.0):2.0):1.0,(Diaporthe_foeniculina_AR5150:0.0,Diaporthe_foeniculina_JQ809272:0.0,Diaporthe_foeniculina_AR5151:0.0,Diaporthe_foeniculina_JF921871:0.0,Diaporthe_foeniculina_MEP12891:0.0,Diaporthe_foeniculina_FAU460:0.0,Diaporthe_foeniculina_GQ281800:0.0,Diaporthe_foeniculina_GQ281798:0.0,Diaporthe_foeniculina_GQ281809:0.0,Diaporthe_foeniculina_KC149969:0.0,Diaporthe_foeniculina_GQ250198:0.0,Diaporthe_foeniculina_GQ250196:0.0,Diaporthe_foeniculina_GQ250194:0.0,Diaporthe_foeniculina_GQ250192:0.0,Diaporthe_foeniculina_DP0392:0.0,Diaporthe_foeniculina_AR5142:0.0,Diaporthe_foeniculina_AR5143:0.0,Diaporthe_foeniculina_AR5144:0.0,Diaporthe_foeniculina_AR5147:0.0,Diaporthe_foeniculina_GQ250197:0.0,Diaporthe_foeniculina_GQ250195:0.0,Diaporthe_foeniculina_GQ250193:0.0,Diaporthe_foeniculina_EU814480:0.0,Diaporthe_foeniculina_AR5145:0.0,Diaporthe_foeniculina_AR5152:0.0,Diaporthe_foeniculina_DP0391:0.0,Diaporthe_foeniculina_FAU462:0.0,Diaporthe_rhusicola_JF951146:0.0,Diaporthe_foeniculina_AR5146:0.0,Diaporthe_foeniculina_ICMP6986:0.0,Diaporthe_foeniculina_ICMP6987:0.0,Diaporthe_foeniculina_ICMP11892:1.0,Diaporthe_foeniculina_AR3607:1.0,Diaporthe_foeniculina_ICMP6970:1.0,Diaporthe_foeniculina_GQ281796:2.0,Diaporthe_foeniculina_HM575422:1.0,Diaporthe_foeniculina_ICMP12285:0.0,Diaporthe_foeniculina_GQ281807:0.0,(Diaporthe_foeniculina_JQ807462:0.0,Diaporthe_foeniculina_JQ807456:0.0,Diaporthe_foeniculina_JQ807454:0.0):4.0):1.0):3.0):3.0):21.0):4.0):5.0):6.5):0.0; [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr63451] END;