#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 29, 2024; 23:26 GMT TreeBASE (cc) 1994-2008 Study reference: Udayanga D., Castlebury L., Rossman A., & Hyde K.D. 2013. Species limits in Diaporthe: molecular re-assessment of D. citri, D. cytosporella, D. foeniculina and D. rudis. Persoonia, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S14141] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=75; TAXLABELS Diaporthe_alleghaniensis_CBS495.72 Diaporthe_ampelina_CBS114016 'Diaporthe ampelina DLR1_19' Diaporthe_canthii_CBS132533 Diaporthe_citri_AR3403 Diaporthe_citri_AR3404 Diaporthe_citri_AR3405 Diaporthe_citri_AR3406 Diaporthe_citri_AR3407 Diaporthe_citri_AR4350 Diaporthe_citri_AR4364 Diaporthe_citri_AR4370 Diaporthe_citri_AR4470 Diaporthe_citri_AR4471 Diaporthe_citri_AR4472 Diaporthe_citri_AR4473 Diaporthe_citri_CT003 Diaporthe_citri_DA103 Diaporthe_citri_FAU583 Diaporthe_citri_ICMP10355 Diaporthe_citri_ICMP6981 Diaporthe_cotoneastri_CBS439.82 Diaporthe_cotoneastri_DP0667 Diaporthe_cyanaroidis_CBS122676 Diaporthe_cytosporella_AR5148 Diaporthe_cytosporella_AR5149 Diaporthe_cytosporella_FAU461 Diaporthe_foeniculina__FAU462 Diaporthe_foeniculina_AR3607 Diaporthe_foeniculina_AR5142 Diaporthe_foeniculina_AR5143 Diaporthe_foeniculina_AR5144 Diaporthe_foeniculina_AR5145 Diaporthe_foeniculina_AR5146 Diaporthe_foeniculina_AR5147 Diaporthe_foeniculina_AR5150 Diaporthe_foeniculina_AR5151 Diaporthe_foeniculina_AR5152 Diaporthe_foeniculina_CBS123208 Diaporthe_foeniculina_CBS129528 Diaporthe_foeniculina_CBS187.27 Diaporthe_foeniculina_DP0391 Diaporthe_foeniculina_DP0392 Diaporthe_foeniculina_DP0454 Diaporthe_foeniculina_FAU460 Diaporthe_foeniculina_MEP12891 Diaporthe_pterocarpi_MFLUCC10571 Diaporthe_pterocarpi_MFLUCC10575 Diaporthe_pterocarpi_MFLUCC10588 Diaporthe_pterocarpicola_MFLUCC10580a Diaporthe_pterocarpicola_MFLUCC10580b Diaporthe_rudis_AR3422 Diaporthe_rudis_AR3438 Diaporthe_rudis_AR3646 Diaporthe_rudis_AR3654 Diaporthe_rudis_CBS113201 Diaporthe_rudis_CBS113487 Diaporthe_rudis_DA243 Diaporthe_rudis_DA244 Diaporthe_rudis_DP0350 Diaporthe_rudis_DP0423 Diaporthe_rudis_DPG01 Diaporthe_rudis_DPG02 Diaporthe_rudis_ER285A Diaporthe_rudis_ER286C Diaporthe_rudis_ER286D Diaporthe_thunbergii_MFLUCC10576a Diaporthe_thunbergii_MFLUCC10576b Diaporthe_thunbergii_MFLUCC10576c Diaporthe_vaccinii_CBS160.32 Diaporthe_vaccinii_DF5032 Diaporthe_vaccinii_FAU446 Diaporthe_vaccinii_FAU468 Diaporthe_vaccinii_FAU633 Disporthe_citri_AR4469 ; END; BEGIN TREES; TITLE Diaporthe_EF1_MP11; LINK TAXA = Taxa; TREE PAUP_1 = [&R] (((((((((Diaporthe_foeniculina_CBS187.27:0.0,Diaporthe_foeniculina_AR3607:0.0,Diaporthe_foeniculina_CBS129528:0.0):1.0,Diaporthe_foeniculina_CBS123208:0.0,Diaporthe_foeniculina__FAU462:0.0,Diaporthe_foeniculina_AR5150:0.0,Diaporthe_foeniculina_AR5143:0.0,Diaporthe_foeniculina_DP0391:0.0,Diaporthe_foeniculina_DP0392:0.0,Diaporthe_foeniculina_DP0454:0.0,Diaporthe_foeniculina_AR5146:0.0,Diaporthe_foeniculina_AR5147:0.0,Diaporthe_foeniculina_AR5152:0.0,Diaporthe_foeniculina_AR5142:0.0,Diaporthe_foeniculina_AR5144:0.0,Diaporthe_foeniculina_AR5151:0.0,Diaporthe_foeniculina_FAU460:0.0,Diaporthe_foeniculina_MEP12891:0.0,Diaporthe_foeniculina_AR5145:0.0):4.0,(Diaporthe_cytosporella_FAU461:0.0,(Diaporthe_cytosporella_AR5148:0.0,Diaporthe_cytosporella_AR5149:0.0):4.0):3.0):21.0,(Diaporthe_pterocarpi_MFLUCC10575:0.0,Diaporthe_pterocarpi_MFLUCC10588:0.0,Diaporthe_pterocarpi_MFLUCC10571:1.0):29.0):13.0,Diaporthe_canthii_CBS132533:24.0):13.0,((Diaporthe_pterocarpicola_MFLUCC10580a:0.0,Diaporthe_pterocarpicola_MFLUCC10580b:0.0):46.0,((Diaporthe_rudis_CBS113201:0.0,Diaporthe_rudis_AR3438:0.0,Diaporthe_rudis_AR3646:0.0,Diaporthe_rudis_AR3422:0.0,Diaporthe_rudis_DA243:0.0,Diaporthe_rudis_ER286D:0.0,Diaporthe_rudis_DA244:0.0,Diaporthe_rudis_DP0423:0.0,Diaporthe_rudis_ER285A:0.0,Diaporthe_rudis_ER286C:0.0,Diaporthe_rudis_DPG01:0.0,Diaporthe_rudis_AR3654:0.0,Diaporthe_rudis_DPG02:0.0,Diaporthe_rudis_DP0350:0.0,Diaporthe_rudis_CBS113487:0.0):6.0,Diaporthe_cyanaroidis_CBS122676:9.0):46.0):20.0):12.0,(((Diaporthe_citri_AR3403:0.0,Diaporthe_citri_AR3405:0.0,Diaporthe_citri_AR4472:0.0,Diaporthe_citri_AR3407:0.0,Diaporthe_citri_ICMP10355:0.0,Diaporthe_citri_ICMP6981:0.0,Diaporthe_citri_AR3404:0.0,Diaporthe_citri_AR4471:0.0,Diaporthe_citri_AR4470:0.0,Diaporthe_citri_AR4473:0.0,Diaporthe_citri_AR3406:0.0,Disporthe_citri_AR4469:1.0,Diaporthe_citri_FAU583:0.0):1.0,Diaporthe_citri_CT003:0.0,Diaporthe_citri_DA103:0.0,(Diaporthe_citri_AR4370:0.0,Diaporthe_citri_AR4350:0.0,Diaporthe_citri_AR4364:0.0):1.0):8.0,(((((Diaporthe_vaccinii_CBS160.32:0.0,Diaporthe_vaccinii_FAU446:0.0):1.0,(Diaporthe_vaccinii_DF5032:0.0,Diaporthe_vaccinii_FAU633:0.0):2.0):1.0,Diaporthe_vaccinii_FAU468:2.0):2.0,Diaporthe_alleghaniensis_CBS495.72:6.0):6.0,(Diaporthe_cotoneastri_CBS439.82:1.0,Diaporthe_cotoneastri_DP0667:0.0):10.0):11.0):15.0):22.0,(Diaporthe_thunbergii_MFLUCC10576a:0.0,Diaporthe_thunbergii_MFLUCC10576b:0.0,Diaporthe_thunbergii_MFLUCC10576c:0.0):21.0):24.0,('Diaporthe ampelina DLR1_19':0.0,Diaporthe_ampelina_CBS114016:0.0):30.0):0.0; [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr63472] END;