#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 25, 2024; 22:30 GMT

TreeBASE (cc) 1994-2008

Study reference:
Talevich E., & Kannan N. 2013. Structural and evolutionary adaptation of rhoptry
kinases and pseudokinases, a family of coccidian virulence factors. BMC Evolutionary
Biology, 13: 117.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S14212]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=43;
        TAXLABELS
            Eimeria_tenella_str._Houghton_ROP40
            'Eimeria tenella str. Houghton ROPK-Eten1'
            'Eimeria tenella str. Houghton ROPK-Eten2a'
            'Eimeria tenella str. Houghton ROPK-Eten2b'
            'Eimeria tenella str. Houghton ROPK-Eten3'
            'Eimeria tenella str. Houghton ROPK-Eten4'
            'Eimeria tenella str. Houghton ROPK-Eten5'
            'Eimeria tenella str. Houghton ROPK-Eten6'
            Eucarya_sp._ePK
            'Eucoccidiida sp. ROP21-27'
            Eucoccidiida_sp._ROP35
            Sarcocystidae_BPK1
            Sarcocystidae_sp._ROP11
            Sarcocystidae_sp._ROP16
            Sarcocystidae_sp._ROP17
            'Sarcocystidae sp. ROP19-29-38'
            'Sarcocystidae sp. ROP2-8'
            Sarcocystidae_sp._ROP20
            Sarcocystidae_sp._ROP22
            Sarcocystidae_sp._ROP23
            Sarcocystidae_sp._ROP24
            Sarcocystidae_sp._ROP25
            Sarcocystidae_sp._ROP26
            Sarcocystidae_sp._ROP28
            Sarcocystidae_sp._ROP30
            Sarcocystidae_sp._ROP31
            Sarcocystidae_sp._ROP32
            Sarcocystidae_sp._ROP33
            Sarcocystidae_sp._ROP34
            Sarcocystidae_sp._ROP36
            Sarcocystidae_sp._ROP37
            'Sarcocystidae sp. ROP4-7'
            Sarcocystidae_sp._ROP41
            'Sarcocystidae sp. ROP42-43-44'
            Sarcocystidae_sp._ROP45
            Sarcocystidae_sp._ROP46
            Sarcocystidae_sp._ROP47
            Sarcocystidae_sp._ROP49
            Sarcocystidae_sp._ROP5
            Sarcocystidae_sp._ROP50
            Toxoplasma_gondii_ROP18
            Toxoplasma_gondii_ROP39
            Toxoplasma_gondii_ROP48
            ;
END;

BEGIN TREES;
      TITLE ROPK_Subfamilies;
      LINK TAXA = Taxa;
      TREE Imported_tree_0 = [&R] (Eucarya_sp._ePK:0.44409,((Sarcocystidae_sp._ROP34:0.92283,(Sarcocystidae_sp._ROP33:0.79464,Eucoccidiida_sp._ROP35:0.358)55.00:0.54424,(Sarcocystidae_BPK1:1.18704,(Sarcocystidae_sp._ROP46:0.89925,Sarcocystidae_sp._ROP50:1.43406)50.00:0.23933)26.00:0.39054)99.00:1.27789,(('Eimeria tenella str. Houghton ROPK-Eten1':1.20524,(('Eimeria tenella str. Houghton ROPK-Eten3':0.8219,('Eimeria tenella str. Houghton ROPK-Eten2a':0.29872,'Eimeria tenella str. Houghton ROPK-Eten2b':0.31695)79.00:0.15425)81.00:0.17779,('Eimeria tenella str. Houghton ROPK-Eten5':0.86594,('Eimeria tenella str. Houghton ROPK-Eten4':1.04046,'Eimeria tenella str. Houghton ROPK-Eten6':0.80272)49.00:0.13802)67.00:0.13643)99.00:0.81339)60.00:0.17893,('Eucoccidiida sp. ROP21-27':1.38193,('Sarcocystidae sp. ROP19-29-38':1.24645,(Sarcocystidae_sp._ROP30:1.33458,(Sarcocystidae_sp._ROP20:0.97773,(Sarcocystidae_sp._ROP11:1.22313,Toxoplasma_gondii_ROP39:0.89245)62.00:0.17346)89.00:0.43301)45.00:0.34662,(Sarcocystidae_sp._ROP25:0.95324,Sarcocystidae_sp._ROP28:1.53052,(Sarcocystidae_sp._ROP26:1.65902,(Sarcocystidae_sp._ROP16:1.70425,Sarcocystidae_sp._ROP37:1.11392)58.00:0.26544)25.00:0.13957)45.00:0.41525,((Sarcocystidae_sp._ROP32:0.73636,Sarcocystidae_sp._ROP45:1.26905)61.00:0.29707,(Sarcocystidae_sp._ROP41:0.75424,(Toxoplasma_gondii_ROP48:1.01595,Sarcocystidae_sp._ROP49:1.59064)96.00:0.50833)58.00:0.17009)28.00:0.32948,((Sarcocystidae_sp._ROP22:0.89197,Sarcocystidae_sp._ROP36:0.51595)99.00:0.93025,(Sarcocystidae_sp._ROP17:1.09807,(Sarcocystidae_sp._ROP23:1.36105,Sarcocystidae_sp._ROP31:0.84199)44.00:0.33717,(Sarcocystidae_sp._ROP24:1.12067,Eimeria_tenella_str._Houghton_ROP40:2.37737,Sarcocystidae_sp._ROP5:1.09095,('Sarcocystidae sp. ROP42-43-44':1.25821,Sarcocystidae_sp._ROP47:0.86948)50.00:0.42567,(Toxoplasma_gondii_ROP18:0.5545,('Sarcocystidae sp. ROP2-8':0.87718,'Sarcocystidae sp. ROP4-7':0.70881)70.00:0.52397)39.00:0.35529)35.00:0.22831)34.00:0.10106)80.00:0.2753)68.00:0.10853)44.00:0.11186)69.00:0.38064)69.00:0.44409);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr63497]


END;