#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 22, 2024; 1:10 GMT TreeBASE (cc) 1994-2008 Study reference: Tan Y., Edwards J., Grice K.R., & Shivas R.G. 2012. Molecular phylogenetic analysis reveals six new species of Diaporthe from Australia. Fungal Diversity, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S13424] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=125; TAXLABELS 'Diaporthe acaciigena CPC17622_JF951140' 'Diaporthe alleghaniensis CBS495_72_FJ889444' 'Diaporthe alnea CBS146_46_KC343008' 'Diaporthe alnea CBS159_47_KC343009' 'Diaporthe ambigua CBS114015_AF230767' 'Diaporthe ampelina CBS114016_AF230751' 'Diaporthe anacardii CBS720_97_KC343024' 'Diaporthe angelicae AR3776_AY196779' 'Diaporthe arctii CBS136_25_KC343031' 'Diaporthe arecae CBS161_64_KC343032' 'Diaporthe arengae CBS114979_KC343034' 'Diaporthe aspalathi CBS117169_DQ286275' 'Diaporthe australafricana CBS111886_KC343038' 'Diaporthe batatas CBS122_21_KC343040' 'Diaporthe beckhausii CBS138_27_KC343041' 'Diaporthe beilharziae BRIP54792_JX862529' 'Diaporthe brasiliensis CBS133183_KC343042' 'Diaporthe canthii CPC19740_JX069864' 'Diaporthe carpini CBS114437_KC343044' 'Diaporthe castaneae-mollissimae _JF957786' 'Diaporthe caulivora CBS127268_HM347712' 'Diaporthe celastrina CBS139_27_KC343047' 'Diaporthe chamaeropis CBS454_81_KC343048' 'Diaporthe chamaeropis CBS753_70_KC343049' 'Diaporthe cinerascens CBS719_96_KC343050' 'Diaporthe citri CBS199_39_KC343051' 'Diaporthe citri CBS230_52_KC343052' 'Diaporthe crataegi CBS114435_KC343055' 'Diaporthe crotalariae CBS162_33_FJ889445' 'Diaporthe cuppatea CBS117499_AY339322' 'Diaporthe cynaroidis CBS122676_EU552122' 'Diaporthe decedens CBS109772_KC343059' 'Diaporthe decedens CBS114281_KC343060' 'Diaporthe detrusa CBS109770_KC343061' 'Diaporthe detrusa CBS114652_KC343062' 'Diaporthe detrusa CBS140_27_KC343063' 'Diaporthe elaeagni CBS504_72_KC343064' 'Diaporthe endophytica CBS133811_KC343065' 'Diaporthe eres CBS439_82_FJ889450' 'Diaporthe eucalyptorum CPC17203_JX069862' 'Diaporthe eugeniae CBS444_82_KC343098' 'Diaporthe fibrosa CBS109751_KC343099' 'Diaporthe fibrosa CBS113830_KC343100' 'Diaporthe foeniculacea CBS123208_KC343104' 'Diaporthe foeniculacea CBS123209_KC343105' 'Diaporthe fraxini-angustifoliae BRIP54781_JX862528' 'Diaporthe ganjae CBS180_91_KC343112' 'Diaporthe gardeniae CBS288_56_KC343113' 'Diaporthe gulyae BRIP54025_JF431299' 'Diaporthe helianthi CBS592_81_KC343115' 'Diaporthe hickoriae CBS145_26_FJ889446' 'Diaporthe hongkongensis CBS115448_KC343119' 'Diaporthe hordei CBS481_92_KC343120' 'Diaporthe impulsa CBS114434_KC343121' 'Diaporthe impulsa CBS141_27_KC343122' 'Diaporthe inconspicua CBS133813_KC343123' 'Diaporthe infecunda CBS133812_KC343126' 'Diaporthe juglandina CBS121004_KC343134' 'Diaporthe kochmanii BRIP54033_JF431295' 'Diaporthe kongii BRIP54031_JF431301' Diaporthe_kyushuensis_AB302250 'Diaporthe leucospermi CBS111980_JN712460' 'Diaporthe litchicola BRIP54900_JX862533' 'Diaporthe longicolla CBS127267_HM347700' 'Diaporthe longispora CBS194_36_KC343135' Diaporthe_lusitanicae_EU814477 'Diaporthe manihotia CBS505_76_KC343138' 'Diaporthe mayteni CBS133185_KC343139' 'Diaporthe megalospora CBS143_27_KC343140' 'Diaporthe melonis CBS507_78_FJ889447' 'Diaporthe musigena CPC17025_JF951138' 'Diaporthe neilliae CBS144_27_KC343144' 'Diaporthe neoarctii CBS109490_KC343145' 'Diaporthe nobilis CBS200_39_KC343151' 'Diaporthe nothofagi BRIP54801_JX862530' 'Diaporthe novem CBS127270_HM347709' 'Diaporthe oncostoma CBS589_78_KC343162' 'Diaporthe oxe CBS133186_KC343164' 'Diaporthe padi CBS114200_KC343169' 'Diaporthe paranensis CBS133184_KC343171' 'Diaporthe pascoei BRIP54847_JX862532' 'Diaporthe passiflorae CPC19183_JX069860' 'Diaporthe perjuncta CBS_109745_AY485785' 'Diaporthe perseae CBS151_73_KC343173' 'Diaporthe phaseolorum CBS116019_KC343175' 'Diaporthe phaseolorum CBS116020_KC343176' 'Diaporthe pseudomangiferae CBS101339_KC343181' 'Diaporthe pseudophoenicicola CBS462_69_KC343184' Diaporthe_pterocarpi_JQ619899 Diaporthe_pterocarpicola_JQ619887 'Diaporthe pustulata CBS109742_KC343185' 'Diaporthe raonikayaporum CBS133182_KC343188' Diaporthe_rhoina_CBS_146.27_KC343189 Diaporthe_rhusicola_CPC_18191_JF951146 Diaporthe_saccarata_CBS_116311_KC343190 'Diaporthe salicicola BRIP54825_JX862531' Diaporthe_schini_CBS_133181_KC343191 Diaporthe_sclerotioides_CBS_296.67_AF439626 Diaporthe_scobina_CBS_251.38_KC343195 Diaporthe_siamensis_JQ619879 Diaporthe_sojae_CBS_180.55_KC343200 Diaporthe_sp._1_CBS_119639_KC343202 Diaporthe_sp._2_LGMF932_KC343204 Diaporthe_sp._3_CBS_287.29_KC343205 Diaporthe_sp._4_LGMF944_KC343206 Diaporthe_sp._5_CBS_125575_KC343207 Diaporthe_sp._6_CBS_115584_KC343208 Diaporthe_sp._7_CBS_458.78_KC343210 Diaporthe_sp._8_LGMF925_KC343211 Diaporthe_stewartii_FJ889448 Diaporthe_stictica_CBS_370.54_KC343212 Diaporthe_strumella_var._longispora_CBS_194.36_FJ889449 Diaporthe_subordinaria_CBS_464.90_KC343214 Diaporthe_tecomae_CBS_100547_KC343215 Diaporthe_terebinthifolii_CBS_133180_KC343216 Diaporthe_thunbergii_JQ619893 Diaporthe_toxica_CBS_534.93_KC343220 Diaporthe_vaccinii_CBS_160.32_KC343228 Diaporthe_vexans_CBS_127.14_KC343229 Diaporthe_viticola_CBS_113201_KC343234 Diaporthe_woodii_CBS_558.93_KC343244 Diaporthe_woolworthii_CBS_148.27_KC343245 Diaporthella_corylina_CBS_121124_KC343004 'Phomopsis dauci CBS315_49_FJ889451' 'Phomopsis emicis BRIP45089a_F957784' ; END; BEGIN TREES; TITLE Diaporthe_ITS_NJ; LINK TAXA = Taxa; TREE PAUP_1 = [&R] ('Diaporthe ambigua CBS114015_AF230767':16.031431425,(('Diaporthe detrusa CBS109770_KC343061':2.0E-8,('Diaporthe alnea CBS159_47_KC343009':0.48911058,'Diaporthe decedens CBS114281_KC343060':0.18449471):0.01462893):3.5595E-4,('Phomopsis dauci CBS315_49_FJ889451':4.67E-6,((('Diaporthe acaciigena CPC17622_JF951140':9.43713091,('Diaporthe alnea CBS146_46_KC343008':12.20484424,'Diaporthe decedens CBS109772_KC343059':14.09156529):10.96217727):7.5249667,('Diaporthe anacardii CBS720_97_KC343024':30.67314547,('Diaporthe elaeagni CBS504_72_KC343064':2.18707525,('Diaporthe alleghaniensis CBS495_72_FJ889444':4.0E-8,('Diaporthe detrusa CBS114652_KC343062':0.04599947,'Diaporthe detrusa CBS140_27_KC343063':0.14795287):0.68078045):3.74560741):8.01218125):2.90796885):3.28455814,(('Diaporthe litchicola BRIP54900_JX862533':4.07106808,('Diaporthe endophytica CBS133811_KC343065':0.12800838,('Phomopsis emicis BRIP45089a_F957784':0.23569096,(('Diaporthe fibrosa CBS109751_KC343099':0.04534401,'Diaporthe fibrosa CBS113830_KC343100':0.13357508):0.03557625,('Diaporthe eucalyptorum CPC17203_JX069862':0.09434,('Diaporthe eres CBS439_82_FJ889450':0.10917821,'Diaporthe eugeniae CBS444_82_KC343098':0.0981518):0.04948297):0.02075555):0.05123913):0.0):5.15189205):7.56618346,('Diaporthe foeniculacea CBS123208_KC343104':2.35028738,(('Diaporthe angelicae AR3776_AY196779':0.52953109,'Diaporthe hordei CBS481_92_KC343120':1.55281899):3.087E-5,(('Diaporthe arecae CBS161_64_KC343032':0.18950423,(('Diaporthe brasiliensis CBS133183_KC343042':0.0587242,('Diaporthe australafricana CBS111886_KC343038':0.05552166,'Diaporthe batatas CBS122_21_KC343040':0.07362926):0.04898741):0.13861601,(('Diaporthe arctii CBS136_25_KC343031':0.07892572,'Diaporthe beckhausii CBS138_27_KC343041':0.09574312):0.02808251,('Diaporthe arengae CBS114979_KC343034':0.07305708,'Diaporthe aspalathi CBS117169_DQ286275':0.08693206):0.07774286):0.0626403):1.0E-8):4.0E-8,(('Diaporthe impulsa CBS114434_KC343121':0.13896464,('Diaporthe impulsa CBS141_27_KC343122':0.02698234,'Diaporthe longicolla CBS127267_HM347700':0.15671491):0.24729873):0.1188798,('Diaporthe leucospermi CBS111980_JN712460':0.11151857,(Diaporthe_schini_CBS_133181_KC343191:0.04704926,(((Diaporthe_vexans_CBS_127.14_KC343229:0.03775644,(Diaporthe_sojae_CBS_180.55_KC343200:0.03626994,Diaporthe_sp._1_CBS_119639_KC343202:0.01250075):0.01587097):0.00954666,(('Diaporthe novem CBS127270_HM347709':0.0286256,('Diaporthe infecunda CBS133812_KC343126':0.01680159,Diaporthe_terebinthifolii_CBS_133180_KC343216:0.01722587):0.00983287):0.00301891,(('Diaporthe phaseolorum CBS116019_KC343175':0.04111173,'Diaporthe phaseolorum CBS116020_KC343176':0.04354699):0.01288583,('Diaporthe manihotia CBS505_76_KC343138':0.06492029,('Diaporthe kochmanii BRIP54033_JF431295':0.00306508,'Diaporthe kongii BRIP54031_JF431301':0.02853139):0.0):0.00567705):0.01476447):0.00857292):0.0,((('Diaporthe melonis CBS507_78_FJ889447':0.04655511,Diaporthe_tecomae_CBS_100547_KC343215:0.02949218):0.01905419,('Diaporthe neoarctii CBS109490_KC343145':0.05352136,(Diaporthe_stewartii_FJ889448:0.01708204,Diaporthe_subordinaria_CBS_464.90_KC343214:0.03900861):0.00479032):0.01261436):0.02377134,((('Diaporthe mayteni CBS133185_KC343139':0.05212471,Diaporthe_sp._2_LGMF932_KC343204:0.015029):0.01670535,(('Diaporthe megalospora CBS143_27_KC343140':0.06170357,Diaporthe_sclerotioides_CBS_296.67_AF439626:0.03195102):0.02563777,('Diaporthe beilharziae BRIP54792_JX862529':0.0405967,(('Diaporthe longispora CBS194_36_KC343135':0.01928725,Diaporthe_strumella_var._longispora_CBS_194.36_FJ889449:0.00853699):0.04247485,(Diaporthe_lusitanicae_EU814477:0.02358205,'Diaporthe raonikayaporum CBS133182_KC343188':0.03151232):0.00997369):0.0):0.0):0.02196695):1.07E-6,(((Diaporthe_kyushuensis_AB302250:0.03206461,Diaporthe_siamensis_JQ619879:0.08130879):0.00230144,(('Diaporthe canthii CPC19740_JX069864':0.03971328,'Diaporthe castaneae-mollissimae _JF957786':0.0784255):0.0,('Diaporthe citri CBS199_39_KC343051':0.04887278,((Diaporthe_woodii_CBS_558.93_KC343244:0.05479817,(('Diaporthe cinerascens CBS719_96_KC343050':0.08688237,('Diaporthe caulivora CBS127268_HM347712':0.03747585,'Diaporthe nobilis CBS200_39_KC343151':0.10879379):0.0):0.0221247,(('Diaporthe crataegi CBS114435_KC343055':0.06560317,'Diaporthe cynaroidis CBS122676_EU552122':0.12506092):0.0,('Diaporthe ganjae CBS180_91_KC343112':0.05952492,'Diaporthe helianthi CBS592_81_KC343115':0.04907194):0.0252754):0.05051179):0.11898386):0.0,(('Diaporthe pustulata CBS109742_KC343185':0.09046036,Diaporthe_scobina_CBS_251.38_KC343195:0.03629429):0.04614735,(('Diaporthe crotalariae CBS162_33_FJ889445':0.08476446,'Diaporthe hickoriae CBS145_26_FJ889446':0.08983369):0.01725313,('Diaporthe chamaeropis CBS454_81_KC343048':0.10436484,(('Diaporthe celastrina CBS139_27_KC343047':0.02545743,'Diaporthe gardeniae CBS288_56_KC343113':0.10352465):0.09577409,(('Diaporthe carpini CBS114437_KC343044':0.07829773,('Diaporthe chamaeropis CBS753_70_KC343049':0.0624901,'Diaporthe foeniculacea CBS123209_KC343105':0.02246908):0.01215222):0.04363201,('Diaporthe cuppatea CBS117499_AY339322':0.01659515,('Diaporthe citri CBS230_52_KC343052':0.05747895,'Diaporthe gulyae BRIP54025_JF431299':0.0357878):0.05852385):0.02470984):0.0):0.08396047):0.01142269):0.0):0.0):0.0):0.03545016):0.06780884):0.13705639,(('Diaporthe oxe CBS133186_KC343164':0.04669318,('Diaporthe paranensis CBS133184_KC343171':0.07633096,(Diaporthe_sp._3_CBS_287.29_KC343205:0.05526146,('Diaporthe passiflorae CPC19183_JX069860':0.0372218,Diaporthe_sp._4_LGMF944_KC343206:0.01680384):0.00890482):0.0074361):0.00463685):0.0,((Diaporthella_corylina_CBS_121124_KC343004:0.19451388,('Diaporthe ampelina CBS114016_AF230751':1.18001785,Diaporthe_pterocarpi_JQ619899:9.6785E-4):0.06841046):0.07711826,(Diaporthe_rhoina_CBS_146.27_KC343189:0.10094141,(((Diaporthe_sp._8_LGMF925_KC343211:0.05746719,('Diaporthe hongkongensis CBS115448_KC343119':0.37173273,'Diaporthe perjuncta CBS_109745_AY485785':0.03256227):0.01985024):0.00635186,(Diaporthe_pterocarpicola_JQ619887:0.04913857,('Diaporthe pseudophoenicicola CBS462_69_KC343184':0.02983482,Diaporthe_sp._7_CBS_458.78_KC343210:0.03291519):0.00287051):0.02487281):0.04879775,((('Diaporthe inconspicua CBS133813_KC343123':0.05365234,Diaporthe_sp._5_CBS_125575_KC343207:0.0381559):0.02221494,('Diaporthe oncostoma CBS589_78_KC343162':0.03417493,(Diaporthe_saccarata_CBS_116311_KC343190:0.04506934,(Diaporthe_rhusicola_CPC_18191_JF951146:0.02617764,Diaporthe_stictica_CBS_370.54_KC343212:0.03782867):0.02497777):8.0E-8):0.0130803):0.01776661,(Diaporthe_toxica_CBS_534.93_KC343220:0.06293003,((Diaporthe_thunbergii_JQ619893:0.05617552,(('Diaporthe padi CBS114200_KC343169':0.03318997,Diaporthe_woolworthii_CBS_148.27_KC343245:0.02362967):0.00596449,(Diaporthe_viticola_CBS_113201_KC343234:0.01963726,('Diaporthe nothofagi BRIP54801_JX862530':0.02495323,'Diaporthe salicicola BRIP54825_JX862531':0.02850245):0.02330945):0.04399899):0.0):0.02424889,(('Diaporthe neilliae CBS144_27_KC343144':0.04792836,('Diaporthe juglandina CBS121004_KC343134':0.04462596,Diaporthe_vaccinii_CBS_160.32_KC343228:0.02252079):0.01712032):0.01820146,(('Diaporthe perseae CBS151_73_KC343173':0.00481679,Diaporthe_sp._6_CBS_115584_KC343208:0.12137753):0.04874047,('Diaporthe pseudomangiferae CBS101339_KC343181':0.02193296,('Diaporthe fraxini-angustifoliae BRIP54781_JX862528':0.02936332,('Diaporthe musigena CPC17025_JF951138':0.05240283,'Diaporthe pascoei BRIP54847_JX862532':0.02459672):0.00590827):0.0086537):0.0):0.03807897):0.02001711):0.0168853):0.00723123):0.0):0.00325738):0.01757363):0.02010085):0.03164186):2.0E-8):0.02165808):0.016819):0.04640716):0.19418058):0.4198011):0.25120259):0.38932081):4.15499882):3.29050898):4.46939159):2.2739E-4):21.93904094):16.031431425); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr63720] END;