#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 17, 2024; 13:59 GMT

TreeBASE (cc) 1994-2008

Study reference:
Pisani D. 2004. Identifying and Removing Fast Evolving Sites Using Compatibility
Analysis: An Example from the Arthropoda. Systematic Biology, 53: 983-994.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S1287]

BEGIN TAXA;
        TITLE  'Neighbor Joining Analysis of the data (excluding sites with LQP>0.6)';
        DIMENSIONS NTAX=47;
        TAXLABELS
            Amblyomma_sp.
            Balanus_balanoides
            Byrsopteryx_gomezi
            Carcinoscorpius_rotundicauda
            Chthonius_tetrachelatus
            Cleidogona_sp.
            Cryptocellus_centralis
            Cryptops_hyalinus
            Ctenolepisma_lineata
            Cylindroiulus_punctatus
            Cypridopsis_vidua
            Danio_rerio
            Drosophila_melanogaster
            Dysdera_crocata
            Equitius_doriae
            Eurytemora_affinis
            Homo_sapiens
            Hutchinsoniella_macracantha
            Idiogaryops_pallidus
            Imnadia_yeyetta
            Leptestheria_dahalacensis
            Leptodora_kindtii
            Libinia_emarginata
            Limnadopsis_birchii
            Limulus_polyphemus
            Lithobius_forficatus
            Manduca_sexta
            Metajapyx_subterraneus
            Nebalia_hessleri
            Nemasoma_varicorne
            Oncocnemis_obscurata
            Opthalmopsylla_volgensis
            Orygma_luctuosum
            Polycentropus_interruptus
            Polyxenus_fasciculatus
            Polyzonium_germanicum
            Proscotolemon_sauteri
            Pseudochydorus_globosus
            Pseudopolydesmus_serratus
            Salmo_salar
            Sclerobunus_robustus
            Sida_crystallina
            Simulium_congareenarum
            Siro_acaroides
            Speleonectes_tulumensis
            Tomocerus_sp.
            Triops_longicaudatus
            ;
END;

BEGIN TREES;
      TITLE Tb7163;
      LINK TAXA = 'Neighbor Joining Analysis of the data (excluding sites with LQP>0.6)';
      TREE Fig._3 = [&R] ((Homo_sapiens,(Danio_rerio,Salmo_salar)),(((((Metajapyx_subterraneus,Ctenolepisma_lineata),Tomocerus_sp.),(Hutchinsoniella_macracantha,Speleonectes_tulumensis)),((((((((Polycentropus_interruptus,(Oncocnemis_obscurata,Manduca_sexta)),Byrsopteryx_gomezi),Opthalmopsylla_volgensis),Simulium_congareenarum),(Drosophila_melanogaster,Orygma_luctuosum)),(((Pseudochydorus_globosus,(Sida_crystallina,((Leptestheria_dahalacensis,Imnadia_yeyetta),Limnadopsis_birchii))),Leptodora_kindtii),Triops_longicaudatus)),(((Libinia_emarginata,Nebalia_hessleri),Balanus_balanoides),(Chthonius_tetrachelatus,Eurytemora_affinis))),Cypridopsis_vidua)),(((((Cleidogona_sp.,Polyxenus_fasciculatus),((Cylindroiulus_punctatus,(Nemasoma_varicorne,Polyzonium_germanicum)),Pseudopolydesmus_serratus)),Lithobius_forficatus),Cryptops_hyalinus),(((((((Sclerobunus_robustus,Proscotolemon_sauteri),Equitius_doriae),(Dysdera_crocata,Cryptocellus_centralis)),Idiogaryops_pallidus),Amblyomma_sp.),Siro_acaroides),(Carcinoscorpius_rotundicauda,Limulus_polyphemus)))));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr643]


END;