#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 19, 2024; 5:25 GMT TreeBASE (cc) 1994-2008 Study reference: Spinks P., Thomson R.C., & Shaffer H. 2009. Nuclear gene phylogeography reveals the historical legacy of an ancient inland sea on lineages of the western pond turtle, Emys marmorata in California. Molecular Ecology, 19(3): 542-556. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S10154] BEGIN TAXA; TITLE M4759; DIMENSIONS NTAX=152; TAXLABELS Clemmys_guttata_HBS108656 Emys_marmorata_HBS1124921 Emys_marmorata_HBS1124932 Emys_marmorata_HBS1124943 Emys_marmorata_HBS1124954 Emys_marmorata_HBS1124965 Emys_marmorata_HBS113717 Emys_marmorata_HBS113725 Emys_marmorata_HBS113820 Emys_marmorata_HBS113821 Emys_marmorata_HBS113842 Emys_marmorata_HBS113843 Emys_marmorata_HBS113845 Emys_marmorata_HBS113848 Emys_marmorata_HBS113849 Emys_marmorata_HBS113850 Emys_marmorata_HBS113854 Emys_marmorata_HBS113855 Emys_marmorata_HBS113857 Emys_marmorata_HBS113858 Emys_marmorata_HBS113859 Emys_marmorata_HBS113860 Emys_marmorata_HBS114055 Emys_marmorata_HBS114192 Emys_marmorata_HBS114195 Emys_marmorata_HBS114258 Emys_marmorata_HBS114263 Emys_marmorata_HBS114264 Emys_marmorata_HBS114265 Emys_marmorata_HBS114266 Emys_marmorata_HBS114434 Emys_marmorata_HBS114671 Emys_marmorata_HBS114680 Emys_marmorata_HBS114684 Emys_marmorata_HBS114685 Emys_marmorata_HBS114686 Emys_marmorata_HBS114687 Emys_marmorata_HBS114689 Emys_marmorata_HBS114859 Emys_marmorata_HBS114863 Emys_marmorata_HBS114865 Emys_marmorata_HBS114880 Emys_marmorata_HBS115032 Emys_marmorata_HBS115114 Emys_marmorata_HBS115237 Emys_marmorata_HBS115242 Emys_marmorata_HBS115255 Emys_marmorata_HBS115415 Emys_marmorata_HBS115418 Emys_marmorata_HBS115446 Emys_marmorata_HBS115523 Emys_marmorata_HBS115524 Emys_marmorata_HBS115540 Emys_marmorata_HBS115541 Emys_marmorata_HBS115543 Emys_marmorata_HBS115545 Emys_marmorata_HBS115548 Emys_marmorata_HBS115552 Emys_marmorata_HBS115557 Emys_marmorata_HBS115785 Emys_marmorata_HBS115788 Emys_marmorata_HBS115790 Emys_marmorata_HBS115793 Emys_marmorata_HBS115800 Emys_marmorata_HBS115823 Emys_marmorata_HBS115831 Emys_marmorata_HBS115834 Emys_marmorata_HBS115843 Emys_marmorata_HBS115857 Emys_marmorata_HBS116027 Emys_marmorata_HBS116028 Emys_marmorata_HBS116029 Emys_marmorata_HBS116057 Emys_marmorata_HBS116110 Emys_marmorata_HBS116112 Emys_marmorata_HBS116119 Emys_marmorata_HBS116120 Emys_marmorata_HBS116206 Emys_marmorata_HBS116215 Emys_marmorata_HBS116216 Emys_marmorata_HBS39721 Emys_marmorata_HBS39722 Emys_marmorata_HBS39725 Emys_marmorata_HBS39726 Emys_marmorata_HBS39728 Emys_marmorata_HBS39729 Emys_marmorata_HBS39730 Emys_marmorata_HBS39731 Emys_marmorata_HBS39732 Emys_marmorata_HBS39734 Emys_marmorata_HBS39736 Emys_marmorata_HBS39737 Emys_marmorata_HBS39738 Emys_marmorata_HBS39739 Emys_marmorata_HBS39740 Emys_marmorata_HBS39751 Emys_marmorata_HBS39753 Emys_marmorata_HBS39754 Emys_marmorata_HBS39755 Emys_marmorata_HBS39756 Emys_marmorata_HBS39757 Emys_marmorata_HBS39759 Emys_marmorata_HBS39760 Emys_marmorata_HBS39761 Emys_marmorata_HBS39762 Emys_marmorata_HBS39765 Emys_marmorata_HBS39766 Emys_marmorata_HBS39771 Emys_marmorata_HBS39772 Emys_marmorata_HBS39778 Emys_marmorata_HBS39795 Emys_marmorata_HBS39796 Emys_marmorata_HBS39798 Emys_marmorata_HBS39800 Emys_marmorata_HBS39802 Emys_marmorata_HBS39805 Emys_marmorata_HBS39806 Emys_marmorata_HBS39807 Emys_marmorata_HBS39808 Emys_marmorata_HBS39810 Emys_marmorata_HBS39811 Emys_marmorata_HBS39812 Emys_marmorata_HBS39813 Emys_marmorata_HBS39814 Emys_marmorata_HBS39823 Emys_marmorata_HBS39826 Emys_marmorata_HBS39833 Emys_marmorata_HBS39836 Emys_marmorata_HBS39837 Emys_marmorata_HBS39841 Emys_marmorata_HBS39842 Emys_marmorata_HBS39843 Emys_marmorata_HBS39847 Emys_marmorata_HBS39848 Emys_marmorata_HBS39849 Emys_marmorata_HBS39850 Emys_marmorata_HBS39851 Emys_marmorata_HBS39852 Emys_marmorata_HBS39855 Emys_marmorata_HBS39856 Emys_marmorata_HBS39859 Emys_marmorata_HBS39860 Emys_marmorata_HBS39861 Emys_marmorata_HBS39862 Emys_marmorata_HBS39863 Emys_marmorata_HBS39864 Emys_marmorata_HBS39869 Emys_marmorata_HBS39872 Glyptemys_insculpta_DQ499656 Glyptemys_muhlenbergii_DQ499655 Terrapene_carolina_AF258859 Terrapene_ornata_AF258862 ; END; BEGIN TREES; TITLE Tb10765; LINK TAXA = M4759; TREE ND4_ML = [&R] (Clemmys_guttata_HBS108656,(((Glyptemys_insculpta_DQ499656,Glyptemys_muhlenbergii_DQ499655),(Emys_marmorata_HBS39721,Emys_marmorata_HBS39722,Emys_marmorata_HBS39729,Emys_marmorata_HBS39734,Emys_marmorata_HBS39737,Emys_marmorata_HBS39739,Emys_marmorata_HBS39751,Emys_marmorata_HBS39754,Emys_marmorata_HBS39755,Emys_marmorata_HBS39756,Emys_marmorata_HBS39757,Emys_marmorata_HBS39759,Emys_marmorata_HBS39760,Emys_marmorata_HBS39761,Emys_marmorata_HBS39766,Emys_marmorata_HBS39772,Emys_marmorata_HBS39778,Emys_marmorata_HBS39795,Emys_marmorata_HBS39802,Emys_marmorata_HBS39805,Emys_marmorata_HBS39808,Emys_marmorata_HBS39810,Emys_marmorata_HBS39814,Emys_marmorata_HBS39823,Emys_marmorata_HBS39826,Emys_marmorata_HBS39833,Emys_marmorata_HBS39842,Emys_marmorata_HBS39847,Emys_marmorata_HBS39850,Emys_marmorata_HBS39851,Emys_marmorata_HBS39852,Emys_marmorata_HBS39856,Emys_marmorata_HBS39859,Emys_marmorata_HBS39860,Emys_marmorata_HBS39861,Emys_marmorata_HBS39862,Emys_marmorata_HBS39863,Emys_marmorata_HBS39869,Emys_marmorata_HBS39872,Emys_marmorata_HBS1124921,Emys_marmorata_HBS1124932,Emys_marmorata_HBS1124943,Emys_marmorata_HBS1124954,Emys_marmorata_HBS1124965,Emys_marmorata_HBS113717,Emys_marmorata_HBS113725,Emys_marmorata_HBS114055,Emys_marmorata_HBS114192,Emys_marmorata_HBS114195,Emys_marmorata_HBS114258,Emys_marmorata_HBS114263,Emys_marmorata_HBS114264,Emys_marmorata_HBS114265,Emys_marmorata_HBS114266,Emys_marmorata_HBS114671,Emys_marmorata_HBS114680,Emys_marmorata_HBS114684,Emys_marmorata_HBS114685,Emys_marmorata_HBS114686,Emys_marmorata_HBS114687,Emys_marmorata_HBS114689,Emys_marmorata_HBS114859,Emys_marmorata_HBS114863,Emys_marmorata_HBS114865,Emys_marmorata_HBS115032,Emys_marmorata_HBS115114,Emys_marmorata_HBS115446,Emys_marmorata_HBS115523,Emys_marmorata_HBS115524,Emys_marmorata_HBS115540,Emys_marmorata_HBS115541,Emys_marmorata_HBS115543,Emys_marmorata_HBS115545,Emys_marmorata_HBS115548,Emys_marmorata_HBS115552,Emys_marmorata_HBS115557,Emys_marmorata_HBS115785,Emys_marmorata_HBS115823,Emys_marmorata_HBS115831,Emys_marmorata_HBS115834,Emys_marmorata_HBS115843,Emys_marmorata_HBS115857,Emys_marmorata_HBS116110,Emys_marmorata_HBS116112,Emys_marmorata_HBS116206,Emys_marmorata_HBS116215,Emys_marmorata_HBS116216),(Emys_marmorata_HBS39725,Emys_marmorata_HBS39726,Emys_marmorata_HBS39736,Emys_marmorata_HBS39753,Emys_marmorata_HBS39765,Emys_marmorata_HBS39771,Emys_marmorata_HBS39796,Emys_marmorata_HBS39798,Emys_marmorata_HBS39807,Emys_marmorata_HBS39811,Emys_marmorata_HBS39812,Emys_marmorata_HBS39813,Emys_marmorata_HBS39837,Emys_marmorata_HBS39848,Emys_marmorata_HBS39849,Emys_marmorata_HBS113820,Emys_marmorata_HBS113821,Emys_marmorata_HBS113842,Emys_marmorata_HBS113843,Emys_marmorata_HBS113845,Emys_marmorata_HBS113848,Emys_marmorata_HBS113849,Emys_marmorata_HBS113850,Emys_marmorata_HBS113854,Emys_marmorata_HBS113855,Emys_marmorata_HBS113857,Emys_marmorata_HBS113858,Emys_marmorata_HBS113859,Emys_marmorata_HBS113860,Emys_marmorata_HBS116119,Emys_marmorata_HBS116120),(Emys_marmorata_HBS39728,Emys_marmorata_HBS39730,Emys_marmorata_HBS39731,Emys_marmorata_HBS39732,Emys_marmorata_HBS39738,Emys_marmorata_HBS39740,Emys_marmorata_HBS39762,Emys_marmorata_HBS39800,Emys_marmorata_HBS39806,Emys_marmorata_HBS39836,Emys_marmorata_HBS39855,Emys_marmorata_HBS114434,Emys_marmorata_HBS114880,Emys_marmorata_HBS115788,Emys_marmorata_HBS115790,Emys_marmorata_HBS115793,Emys_marmorata_HBS115800,Emys_marmorata_HBS116057),(Emys_marmorata_HBS39841,Emys_marmorata_HBS39843,Emys_marmorata_HBS39864,Emys_marmorata_HBS115237,Emys_marmorata_HBS115242,Emys_marmorata_HBS115255,Emys_marmorata_HBS115415,Emys_marmorata_HBS115418,Emys_marmorata_HBS116027,Emys_marmorata_HBS116028,Emys_marmorata_HBS116029)),(Terrapene_carolina_AF258859,Terrapene_ornata_AF258862))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr6669] END;