#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 19, 2024; 6:55 GMT TreeBASE (cc) 1994-2008 Study reference: Rahman M.Z., Hiroyuki M., Suga H., & Kageyama K. 2013. Phytophthora asiatica sp. nov., a new species causing leaf and stem blight of kudzu in Japan. Mycological Progress, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S14256] BEGIN TAXA; TITLE ITS_whole_taxa; DIMENSIONS NTAX=133; TAXLABELS _Phytophthora_taxon_walnut Phytophthora_alni Phytophthora_alticola Phytophthora_amnicola Phytophthora_andina Phytophthora_aquimorbida Phytophthora_arecae Phytophthora_arenaria Phytophthora_asparagi Phytophthora_austrocedri Phytophthora_bilorbang Phytophthora_bisheria Phytophthora_boehmeriae Phytophthora_borealis Phytophthora_botryosa Phytophthora_brassicae Phytophthora_cactorum Phytophthora_cajani_ Phytophthora_cambivora Phytophthora_capensis Phytophthora_capsici Phytophthora_captiosa Phytophthora_chrysanthemi Phytophthora_cichorii Phytophthora_cinnamomi Phytophthora_cinnamomi_var_parvispora Phytophthora_cinnamomi_var_roboniae_P16350 Phytophthora_cinnamomi_var_roboniae_P16351 Phytophthora_citricola Phytophthora_citrophthora Phytophthora_clandestina Phytophthora_colocasiae Phytophthora_contricta Phytophthora_cryptogea Phytophthora_drechsleri Phytophthora_elongata Phytophthora_erythroseptica Phytophthora_europaea Phytophthora_fallax Phytophthora_fluvialis Phytophthora_foliorum Phytophthora_fragariae Phytophthora_frigida Phytophthora_gallica Phytophthora_gemini Phytophthora_gibbosa Phytophthora_glovera Phytophthora_gonapodyides Phytophthora_gregata Phytophthora_hedraiandra Phytophthora_heveae Phytophthora_hibernalis Phytophthora_himalsilva Phytophthora_humicola Phytophthora_hydropathica Phytophthora_idaei Phytophthora_ilicis Phytophthora_infestans Phytophthora_inflata Phytophthora_insolita Phytophthora_inundata Phytophthora_ipomoeae Phytophthora_iranica Phytophthora_irrigata Phytophthora_katsurae Phytophthora_kernoviae Phytophthora_lactucae Phytophthora_lacustris Phytophthora_lateralis Phytophthora_litchii Phytophthora_litoralis Phytophthora_macrochlamydospora Phytophthora_meadii Phytophthora_medicaginis Phytophthora_megakarya Phytophthora_megasperma Phytophthora_melonis Phytophthora_mengei Phytophthora_mirabilis Phytophthora_morindae Phytophthora_multivesiculata Phytophthora_multivora Phytophthora_nemorosa Phytophthora_nicotianae Phytophthora_niederhauserii Phytophthora_obscura Phytophthora_palmivora Phytophthora_parsiana Phytophthora_phaseoli Phytophthora_pini Phytophthora_pinifolia Phytophthora_pistaciae Phytophthora_plurivora Phytophthora_polonica Phytophthora_porri Phytophthora_primulae Phytophthora_pseudosyringae Phytophthora_pseudotsugae Phytophthora_psychrophila Phytophthora_quercetorum Phytophthora_quininea Phytophthora_ramorum Phytophthora_richardae Phytophthora_riparia Phytophthora_rosacearum Phytophthora_rubi Phytophthora_sansomeana Phytophthora_sinensis Phytophthora_siskiyouensis Phytophthora_sojae Phytophthora_sp_kelmania Phytophthora_sp_personii Phytophthora_sp._toku1 Phytophthora_sp._toku3 Phytophthora_sp._toku8 Phytophthora_syringae Phytophthora_taxon_castitis Phytophthora_taxon_cranberry Phytophthora_taxon_emzansi Phytophthora_taxon_forestsoil Phytophthora_taxon_oaksoil Phytophthora_taxon_paludosa Phytophthora_taxon_parsley Phytophthora_taxon_pgchlamydo Phytophthora_taxon_raspberry Phytophthora_taxon_riversoil Phytophthora_tentaculata Phytophthora_thermophila Phytophthora_trifolii_ Phytophthora_tropicalis Phytophthora_uliginosa Phytophthora_vignae Pythium_vexans ; END; BEGIN TREES; TITLE Phytophthora_asiatica_ITS_Whole_NJ_Result; LINK TAXA = ITS_whole_taxa; TREE PAUP_1 = [&R] (Pythium_vexans:0.1701985,((((Phytophthora_boehmeriae:0.031661,(Phytophthora_kernoviae:0.016822,Phytophthora_morindae:0.010319):0.016111):0.042826,(Phytophthora_gallica:0.048637,(Phytophthora_contricta:0.015335,(Phytophthora_captiosa:9.64E-4,Phytophthora_fallax:0.004762):0.025862):0.098977):0.016989):0.007553,((Phytophthora_quininea:0.001811,(Phytophthora_macrochlamydospora:0.002881,Phytophthora_richardae:9.38E-4):0.006831):0.082011,((Phytophthora_insolita:0.037054,Phytophthora_polonica:0.049416):0.039544,(Phytophthora_aquimorbida:0.039954,(Phytophthora_chrysanthemi:0.019879,(Phytophthora_irrigata:0.030057,(Phytophthora_hydropathica:0.016268,Phytophthora_parsiana:0.010784):0.002413):0.007174):0.005911):0.034979):0.00528):0.019971):0.031135,((((Phytophthora_syringae:0.022223,(Phytophthora_austrocedri:0.017939,Phytophthora_obscura:0.013059):0.005252):0.029927,((Phytophthora_cichorii:0.007419,(Phytophthora_primulae:0.0,Phytophthora_taxon_parsley:0.0):0.015757):0.003542,(Phytophthora_brassicae:0.021449,(Phytophthora_porri:0.008247,(Phytophthora_lactucae:5.48E-4,Phytophthora_taxon_castitis:0.003257):0.001326):-0.001908):0.00362):0.086815):0.015722,((Phytophthora_hibernalis:0.037424,(Phytophthora_foliorum:0.011471,(Phytophthora_lateralis:0.008738,Phytophthora_ramorum:0.006599):0.014837):0.00577):0.014297,((Phytophthora_medicaginis:0.004221,Phytophthora_trifolii_:0.009208):0.003618,(Phytophthora_sansomeana:0.00773,(Phytophthora_drechsleri:0.011986,(Phytophthora_cryptogea:-1.92E-4,(Phytophthora_erythroseptica:-4.01E-4,Phytophthora_sp_kelmania:0.004206):0.002097):0.002691):0.001139):0.004214):0.027098):0.016789):0.021585,((((Phytophthora_cinnamomi:0.007169,Phytophthora_cinnamomi_var_parvispora:0.019883):0.012328,(Phytophthora_uliginosa:0.007374,(Phytophthora_europaea:0.003438,((Phytophthora_alni:0.001347,Phytophthora_fragariae:5.53E-4):6.26E-4,(Phytophthora_cambivora:9.35E-4,Phytophthora_rubi:9.65E-4):0.00319):3.78E-4):0.005076):0.018575):0.009837,(Phytophthora_sojae:0.00189,(((Phytophthora_melonis:0.00135,Phytophthora_sinensis:0.002455):0.002244,(Phytophthora_pistaciae:0.00247,(Phytophthora_cajani_:0.00307,Phytophthora_vignae:0.002644):0.001345):0.001782):0.001423,(Phytophthora_sp._toku3:0.001166,(Phytophthora_cinnamomi_var_roboniae_P16350:0.0,(Phytophthora_cinnamomi_var_roboniae_P16351:0.0,(Phytophthora_sp._toku1:0.0,(Phytophthora_sp._toku8:0.0,Phytophthora_niederhauserii:0.0):0.0):0.0):0.0):7.34E-4):0.001588):0.001394):0.016213):0.035011,((Phytophthora_asparagi:0.018555,(((Phytophthora_rosacearum:0.005788,_Phytophthora_taxon_walnut:0.007615):0.021952,((Phytophthora_gemini:0.008379,Phytophthora_sp_personii:0.028606):0.001917,(Phytophthora_humicola:0.001813,Phytophthora_inundata:0.003902):0.00188):0.023239):0.002919,((Phytophthora_gonapodyides:0.001366,(Phytophthora_lacustris:0.0,Phytophthora_riparia:0.0):5.34E-4):0.014665,(Phytophthora_taxon_forestsoil:0.003786,(((Phytophthora_taxon_pgchlamydo:0.002004,(Phytophthora_megasperma:0.008672,Phytophthora_pinifolia:0.016415):-1.78E-4):0.002814,(Phytophthora_borealis:0.002038,(Phytophthora_taxon_riversoil:0.002958,(Phytophthora_bilorbang:0.0,Phytophthora_taxon_oaksoil:0.0):8.46E-4):0.005346):8.85E-4):7.65E-4,(((Phytophthora_amnicola:0.005343,Phytophthora_fluvialis:0.011948):0.001218,(Phytophthora_litoralis:0.003302,Phytophthora_thermophila:0.002412):0.003122):0.002954,(Phytophthora_taxon_cranberry:0.006157,(Phytophthora_taxon_paludosa:0.009006,(Phytophthora_gibbosa:0.003644,(Phytophthora_gregata:0.0,Phytophthora_taxon_raspberry:0.0):1.61E-4):0.00501):-7.13E-4):0.0061):0.001421):-0.001434):0.003097):0.005008):0.018286):0.026495,(((Phytophthora_frigida:0.033788,(Phytophthora_bisheria:0.020875,Phytophthora_elongata:0.006177):0.009888):0.016684,(((Phytophthora_citrophthora:-4.59E-4,Phytophthora_himalsilva:0.011933):0.003558,(Phytophthora_botryosa:0.00175,(Phytophthora_colocasiae:0.001394,Phytophthora_meadii:5.06E-4):0.00206):2.55E-4):0.006979,(Phytophthora_multivesiculata:0.026315,((Phytophthora_capensis:0.001594,Phytophthora_taxon_emzansi:0.00412):0.009042,(((Phytophthora_capsici:0.007267,Phytophthora_glovera:0.002282):0.007274,(Phytophthora_tropicalis:0.004683,(Phytophthora_mengei:0.003294,Phytophthora_siskiyouensis:0.006255):0.002986):0.002402):0.00252,(Phytophthora_multivora:0.002441,(Phytophthora_citricola:4.32E-4,(Phytophthora_plurivora:0.003041,(Phytophthora_inflata:4.24E-4,Phytophthora_pini:0.001476):0.002681):0.00185):0.001602):0.003679):0.001084):0.007325):0.003749):0.008275):0.024415,((Phytophthora_megakarya:0.049717,((Phytophthora_quercetorum:0.022331,(Phytophthora_alticola:0.003215,Phytophthora_arenaria:0.004414):0.004855):0.005588,(Phytophthora_litchii:0.013533,(Phytophthora_arecae:0.0,Phytophthora_palmivora:0.0):0.021437):0.002273):0.003593):0.024916,(((Phytophthora_heveae:0.005203,Phytophthora_katsurae:0.002426):0.025574,(Phytophthora_psychrophila:8.48E-4,(Phytophthora_ilicis:0.003305,(Phytophthora_nemorosa:0.0,Phytophthora_pseudosyringae:0.0):5.0E-4):0.002158):0.022888):0.001514,((Phytophthora_nicotianae:0.025591,(Phytophthora_tentaculata:0.008586,(Phytophthora_clandestina:0.010019,Phytophthora_iranica:0.003384):0.007905):0.012909):0.002016,((Phytophthora_pseudotsugae:0.001472,(Phytophthora_cactorum:0.003529,(Phytophthora_hedraiandra:-4.027E-5,Phytophthora_idaei:0.003845):2.86E-4):3.36E-4):0.012453,(Phytophthora_phaseoli:5.66E-4,(Phytophthora_ipomoeae:0.001818,(Phytophthora_andina:0.0,(Phytophthora_infestans:0.0,Phytophthora_mirabilis:0.0):0.0):8.166E-5):0.001294):0.020364):0.024839):0.030409):0.009045):0.006213):0.014331):0.025951):0.026232):0.042528):0.1701985); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr66852] END;