#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 12, 2024; 4:52 GMT

TreeBASE (cc) 1994-2008

Study reference:
Lim H.C., Teng S.T., Leaw C.P., & Lim P.T. 2013. Three novel species in the Pseudo-nitzschia
pseudodelicatissima complex: P. batesiana sp. nov., P. lundholmiae sp.
nov. and P. fukuyoi sp. nov. (Bacillariophyceae), from the Strait of Malacca,
Malaysia. Journal of Phycology, 49(5): 902-916.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S14069]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=67;
        TAXLABELS
            Amphora_coffeaeformis_Amphora
            Bacillaria_paxillifer_Tenerife7
            Cylindrotheca_closterium_CCAP0405
            'Nitzschia navis-varingica VSP9741'
            Phaeodactylum_tricornutum_ND52
            'Pseudo-nitzschia americana CV2'
            'Pseudo-nitzschia australis CV18'
            'Pseudo-nitzschia australis OM1'
            'Pseudo-nitzschia batesiana PnTb19'
            'Pseudo-nitzschia brasiliana PnPm11'
            'Pseudo-nitzschia brasiliana PnSm20'
            'Pseudo-nitzschia caciantha AL56'
            'Pseudo-nitzschia calliantha AL112'
            'Pseudo-nitzschia calliantha NL2'
            'Pseudo-nitzschia circumpora PnSb57'
            'Pseudo-nitzschia circumpora PnSb58'
            'Pseudo-nitzschia circumpora PnSb59'
            'Pseudo-nitzschia cuspidata AL17'
            'Pseudo-nitzschia cuspidata NWFSC194'
            'Pseudo-nitzschia decipiens Mex13'
            'Pseudo-nitzschia delicatissima AL22'
            'Pseudo-nitzschia delicatissima CV3'
            'Pseudo-nitzschia dolorosa AL59'
            'Pseudo-nitzschia dolorosa PnKk08'
            'Pseudo-nitzschia fraudulenta AL75'
            'Pseudo-nitzschia fraudulenta Limens1'
            'Pseudo-nitzschia fryxelliana NWFSC047'
            'Pseudo-nitzschia fryxelliana NWFSC241'
            'Pseudo-nitzschia fryxelliana NWFSC242'
            'Pseudo-nitzschia fukuyoi PnKk36'
            'Pseudo-nitzschia fukuyoi PnTb25'
            'Pseudo-nitzschia fukuyoi PnTb39'
            'Pseudo-nitzschia fukuyoi PnTb72'
            'Pseudo-nitzschia galaxiae Mex23'
            'Pseudo-nitzschia galaxiae SZNB56'
            'Pseudo-nitzschia hasleana NWFSC186'
            'Pseudo-nitzschia hasleana NWFSC252'
            'Pseudo-nitzschia inflatula no7'
            'Pseudo-nitzschia lineola NWFSC188'
            'Pseudo-nitzschia lundholmiae PnTb10'
            'Pseudo-nitzschia lundholmiae PnTb21'
            'Pseudo-nitzschia lundholmiae PnTb26'
            'Pseudo-nitzschia lundholmiae PnTb28'
            'Pseudo-nitzschia lundholmiae PnTb38'
            'Pseudo-nitzschia lundholmiae PnTb45'
            'Pseudo-nitzschia lundholmiae PnTb48'
            'Pseudo-nitzschia lundholmiae PnTb61'
            'Pseudo-nitzschia mannii AL101'
            'Pseudo-nitzschia mannii P4'
            'Pseudo-nitzschia micropora PnKk14'
            'Pseudo-nitzschia micropora VPBB3'
            'Pseudo-nitzschia multiseries CV19'
            'Pseudo-nitzschia multiseries NWFSC011'
            'Pseudo-nitzschia multistriata KoreaA'
            'Pseudo-nitzschia multistriata SZNB27'
            'Pseudo-nitzschia pseudodelicatissima NWFSC040'
            'Pseudo-nitzschia pseudodelicatissima P11'
            'Pseudo-nitzschia pseudolicatissima AL15'
            'Pseudo-nitzschia pungens PnKd12'
            'Pseudo-nitzschia pungens PnSb48'
            'Pseudo-nitzschia seriata Nissum3'
            'Pseudo-nitzschia seriata PLYSt52B'
            'Pseudo-nitzschia subfraudulenta rensubfrau'
            'Pseudo-nitzschia subpacifica P28'
            'Pseudo-nitzschia subpacifica RdA8'
            'Pseudo-nitzschia subpacifica Zhenbo7B'
            'Pseudo-nitzschia turgiduloides 124C'
            ;
END;

BEGIN TREES;
      TITLE LSU_rDNA_dataset_ML;
      LINK TAXA = Taxa;
      TREE ML_PAUP_LSU = [&R] (Amphora_coffeaeformis_Amphora:0.148004,(Phaeodactylum_tricornutum_ND52:0.085033,(Bacillaria_paxillifer_Tenerife7:0.030544,(Cylindrotheca_closterium_CCAP0405:0.145661,('Nitzschia navis-varingica VSP9741':0.033987,('Pseudo-nitzschia multiseries CV19':0.0,'Pseudo-nitzschia multiseries NWFSC011':0.0,(('Pseudo-nitzschia pungens PnKd12':0.001731,'Pseudo-nitzschia pungens PnSb48':0.0):0.006999,(('Pseudo-nitzschia americana CV2':0.007073,('Pseudo-nitzschia brasiliana PnPm11':0.0,'Pseudo-nitzschia brasiliana PnSm20':0.0):0.00721):0.001764,((('Pseudo-nitzschia multistriata KoreaA':0.0,'Pseudo-nitzschia multistriata SZNB27':0.0):0.009007,('Pseudo-nitzschia seriata Nissum3':0.0,'Pseudo-nitzschia seriata PLYSt52B':0.0,('Pseudo-nitzschia australis CV18':0.0,'Pseudo-nitzschia australis OM1':0.0):0.001748):0.005371):0.001767,('Pseudo-nitzschia subfraudulenta rensubfrau':0.0,(('Pseudo-nitzschia turgiduloides 124C':0.030096,'Pseudo-nitzschia fraudulenta AL75':0.0,'Pseudo-nitzschia fraudulenta Limens1':0.0):0.001711,((('Pseudo-nitzschia delicatissima AL22':0.001724,'Pseudo-nitzschia delicatissima CV3':0.0):0.001725,('Pseudo-nitzschia dolorosa AL59':0.001721,'Pseudo-nitzschia dolorosa PnKk08':0.001724,('Pseudo-nitzschia micropora PnKk14':0.001738,'Pseudo-nitzschia micropora VPBB3':0.0):0.003504):0.00346,('Pseudo-nitzschia inflatula no7':0.012795,('Pseudo-nitzschia decipiens Mex13':0.010955,('Pseudo-nitzschia galaxiae Mex23':0.0,'Pseudo-nitzschia galaxiae SZNB56':0.0):0.009233):0.005439):0.001976):0.002552,((('Pseudo-nitzschia lundholmiae PnTb45':0.0,'Pseudo-nitzschia lundholmiae PnTb48':0.0,'Pseudo-nitzschia lundholmiae PnTb61':0.0,'Pseudo-nitzschia lundholmiae PnTb10':0.0,'Pseudo-nitzschia lundholmiae PnTb21':0.0,'Pseudo-nitzschia lundholmiae PnTb26':0.0,'Pseudo-nitzschia lundholmiae PnTb28':0.0,'Pseudo-nitzschia lundholmiae PnTb38':0.0):0.005485,('Pseudo-nitzschia pseudolicatissima AL15':0.001723,'Pseudo-nitzschia cuspidata AL17':0.0,'Pseudo-nitzschia pseudodelicatissima NWFSC040':0.0,'Pseudo-nitzschia cuspidata NWFSC194':0.0,'Pseudo-nitzschia pseudodelicatissima P11':0.001742,('Pseudo-nitzschia fukuyoi PnTb72':0.0,'Pseudo-nitzschia fukuyoi PnKk36':0.0,'Pseudo-nitzschia fukuyoi PnTb25':0.0,'Pseudo-nitzschia fukuyoi PnTb39':0.0):0.001731):0.007029):0.004345,(('Pseudo-nitzschia fryxelliana NWFSC047':0.0,'Pseudo-nitzschia fryxelliana NWFSC241':0.0,'Pseudo-nitzschia fryxelliana NWFSC242':0.0):0.010819,('Pseudo-nitzschia lineola NWFSC188':0.029084,((('Pseudo-nitzschia hasleana NWFSC186':0.0,'Pseudo-nitzschia hasleana NWFSC252':0.0):0.00714,(('Pseudo-nitzschia mannii AL101':0.001747,'Pseudo-nitzschia mannii P4':0.0):0.01418,('Pseudo-nitzschia calliantha AL112':0.0,'Pseudo-nitzschia calliantha NL2':0.0):0.002068):0.009967):0.018646,('Pseudo-nitzschia batesiana PnTb19':0.115196,(('Pseudo-nitzschia circumpora PnSb57':0.0,'Pseudo-nitzschia circumpora PnSb58':0.0,'Pseudo-nitzschia circumpora PnSb59':0.0):0.019323,('Pseudo-nitzschia caciantha AL56':0.007062,('Pseudo-nitzschia subpacifica P28':0.001713,'Pseudo-nitzschia subpacifica RdA8':0.0,'Pseudo-nitzschia subpacifica Zhenbo7B':0.0):0.008893):0.005983):0.007965):0.016797):0.005058):0.008689):0.002918):0.001798):0.006329):0.001766):0.007055):0.001786):0.009404):0.010897):0.127843):0.019431):0.028301):0.198489):0.148004);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr67529]


END;