#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 19, 2024; 4:48 GMT

TreeBASE (cc) 1994-2008

Study reference:
Scully E.D., Hoover K., Carlson J.E., Tien M., & Geib S.M. 2013. Midgut Transcriptome
Profiling of Anoplophora glabripennis, a Lignocellulose Degrading Cerambycid
Beetle. BMC Genomics, 14(850).

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S14849]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=46;
        TAXLABELS
            Anoplophora_chinensis
            Anoplophora_glabripennis_m2564
            Anoplophora_glabripennis_m2613
            Anoplophora_glabripennis_m3625
            Anoplophora_glabripennis_m5711
            Anoplophora_glabripennis_m8050
            Anoplophora_glabripennis_m9795
            'Aphelenchoides fragariae GH5_1'
            'Aphelenchoides fragariae GH5_2'
            'Aphelenchoides fragariae GH5_3'
            Apriona_germari
            'Callosobruchus maculatus GH5_1'
            'Callosobruchus maculatus GH5_2'
            'Callosobruchus maculatus GH5_3'
            'Callosobruchus maculatus GH5_4'
            Cellovibrio_japonicus_Ueda107
            Cellvibrio_japonicus
            Dickeya_dadantii_Ech1591
            Dickeya_zeae_Ech586
            'Ditylenchus destructor GH5_1'
            'Ditylenchus destructor GH5_2'
            'Ditylenchus_destructor_GH5_3'
            'Ditylenchus_destructor_GH5_4'
            Erwinia_chrysanthemi
            Flavobacterium_sp_CF136
            Gastrophysa_viridula
            Globodera_rostochiensis
            'Heterodera glycines GH5_1'
            'Heterodera glycines GH5_2'
            'Heterodera glycines GH5_3'
            'Heterodera glycines GH5_4'
            'Heterodera glycines GH5_5'
            'Meloidogyne incognita GH5_1'
            'Meloidogyne incognita GH5_2'
            'Meloidogyne incognita GH5_3'
            Oncideres_albomarginata_chamela
            Pantoea_stewartii_DC283
            Pratylenchus_penetrans
            Psacothea_hilaris
            Pseudomonas_ND137
            'Radopholus similis GH5_1'
            'Radopholus similis GH5_2'
            Rhodopirellula_sp_SWK7
            Saccharophagus_degradans_2_40
            Saccharophagus_degradans_JamR001
            Saccharophagus_degradans_Myt1
            ;
END;

BEGIN TREES;
      TITLE GH5a.WAGIF.consensus;
      LINK TAXA = Taxa;
      TREE Fig._9 = [&R] ((Gastrophysa_viridula:0.30034847654,('Callosobruchus maculatus GH5_4':0.39150050636,('Callosobruchus maculatus GH5_3':0.02835993594,('Callosobruchus maculatus GH5_1':0.07114622262,'Callosobruchus maculatus GH5_2':0.17590453052)83.60:0.155068239474)74.60:0.335545863298)45.60:0.459736795395)100.00:8.47146393375,(((Cellvibrio_japonicus:0.00144266602,Cellovibrio_japonicus_Ueda107:1.0E-8)64.60:0.643714330774,((Pseudomonas_ND137:0.64093574428,(Saccharophagus_degradans_2_40:0.30633748768,(Saccharophagus_degradans_Myt1:1.0E-8,Saccharophagus_degradans_JamR001:0.00591064292):0.150749993895)98.60:0.254333321435)89.20:0.204158058172,(Pantoea_stewartii_DC283:0.70357368992,(Dickeya_zeae_Ech586:0.15919281852,(Erwinia_chrysanthemi:0.03239093914,Dickeya_dadantii_Ech1591:0.07829856292)55.00:0.0401332117091)98.80:0.49669165919)46.80:0.199231005128)53.60:0.224817004695)32.80:0.502528156097,((Rhodopirellula_sp_SWK7:0.57424641204,Flavobacterium_sp_CF136:0.89531789134)97.60:0.667146413668,(((Oncideres_albomarginata_chamela:0.199236348,Anoplophora_glabripennis_m9795:0.07429868596)63.80:0.371247123072,((Anoplophora_glabripennis_m3625:0.38938957964,(Anoplophora_chinensis:0.01561809648,Anoplophora_glabripennis_m2564:0.0012976862)97.80:0.32889013589)79.40:0.131651682393,((Anoplophora_glabripennis_m2613:0.25017995858,Anoplophora_glabripennis_m8050:0.30103617048)99.00:0.280677031293,(Apriona_germari:0.08579536006,(Psacothea_hilaris:0.03374564778,Anoplophora_glabripennis_m5711:0.07088504684)38.00:0.0482977028947)98.80:0.426466923704)53.40:0.101736722472)72.20:0.121047190997)57.80:0.429054893668,('Heterodera glycines GH5_5':1.18694254602,(('Aphelenchoides fragariae GH5_2':0.00847538006,'Aphelenchoides fragariae GH5_3':0.01004933754)99.00:0.958551528465,((('Radopholus similis GH5_1':0.19331650518,'Radopholus similis GH5_2':0.1426363569)94.60:0.212772260867,('Aphelenchoides fragariae GH5_1':0.4161743005,(Pratylenchus_penetrans:0.44292594984,('Meloidogyne incognita GH5_3':0.17934574682,('Meloidogyne incognita GH5_1':0.00338908136,'Meloidogyne incognita GH5_2':0.0108810025)99.40:0.121081280382)100.00:0.54226932834)41.60:0.122776175048)58.20:0.116985679107)31.60:0.10841537019,(('Ditylenchus_destructor_GH5_4':0.62030538688,('Ditylenchus_destructor_GH5_3':0.06667492486,('Ditylenchus destructor GH5_1':0.07013331308,'Ditylenchus destructor GH5_2':0.06605657122)99.80:0.0761189541683)99.80:0.224912092525)94.20:0.162096358726,(Globodera_rostochiensis:0.3823963106,('Heterodera glycines GH5_4':0.03259375036,('Heterodera glycines GH5_3':1.0E-8,('Heterodera glycines GH5_1':0.00444973684,'Heterodera glycines GH5_2':1.0E-8)84.20:0.0105997085511)98.00:0.0386663516327)100.00:0.26290365666)100.00:0.46558308008)40.80:0.103309826127)21.60:0.087682589537)45.40:0.17222995326)29.20:0.174975183082)40.80:0.355877615735)46.20:0.540891214589)53.80:8.47146393375);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr67546]


END;