#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 18, 2024; 1:38 GMT

TreeBASE (cc) 1994-2008

Study reference:
Ekanayake P.N., Rabinovich M., Guthridge K.M., Spangenberg G.C., Forster J.W., &
Sawbridge T.I. 2013. Phylogenomics of fescue grass-derived fungal endophytes based
on selected nuclear genes and the mitochondrial gene complement. BMC Evolutionary
Biology, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S14923]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=43;
        TAXLABELS
            Epichloe_amarillans_E57_contig00045
            Epichloe_baconii_9707
            Epichloe_brachyelytri_JN613323_E4804
            Epichloe_bromicola_JX441995_E502
            Epichloe_elymi_JX402755_E56
            Epichloe_festucae_AB205145_Fl1
            Epichloe_festucae_JN640287_E2368
            Epichloe_typhina_9340
            Epichloe_typhina_9636
            Epichloe_typhina_JN640289_E5819
            Epichloe_typhina_JX402754_E8
            Festuca_arundinacea_Taxonomic_Group_2_NEA17_GC1
            Festuca_arundinacea_Taxonomic_Group_2_NEA17_GC2
            Festuca_arundinacea_Taxonomic_Group_2_NEA32_GC1
            Festuca_arundinacea_Taxonomic_Group_2_NEA32_GC2
            Festuca_arundinacea_Taxonomic_Group_3_NEA21_GC1
            Festuca_arundinacea_Taxonomic_Group_3_NEA21_GC2
            Festuca_arundinacea_Taxonomic_Group_3_NEA23_GC1
            Festuca_arundinacea_Taxonomic_Group_3_NEA23_GC2
            Festuca_arundinacea_Taxonomic_Group_3_like_NEA33_GC1
            Festuca_arundinacea_Taxonomic_Group_3_like_NEA33_GC2
            Neotyphodium_coenophialum_E34_GC1
            Neotyphodium_coenophialum_E34_GC2
            Neotyphodium_coenophialum_E34_GC3
            Neotyphodium_coenophialum_NEA14_GC1
            Neotyphodium_coenophialum_NEA14_GC2
            Neotyphodium_coenophialum_NEA14_GC3
            Neotyphodium_coenophialum_NEA16_GC1
            Neotyphodium_coenophialum_NEA16_GC2
            Neotyphodium_coenophialum_NEA16_GC3
            Neotyphodium_coenophialum_NEA20_GC1
            Neotyphodium_coenophialum_NEA20_GC2
            Neotyphodium_coenophialum_NEA20_GC3
            Neotyphodium_coenophialum_NEA22_GC1
            Neotyphodium_coenophialum_NEA22_GC2
            Neotyphodium_coenophialum_NEA22_GC3
            Neotyphodium_lolii_ST
            Neotyphodium_uncinatum_E81_GC1
            Neotyphodium_uncinatum_E81_GC2
            Uncharacterised_Neotyphodium_Species_NEA18_GC1
            Uncharacterised_Neotyphodium_Species_NEA18_GC2
            Uncharacterised_Neotyphodium_Species_NEA19_GC1
            Uncharacterised_Neotyphodium_Species_NEA19_GC2
            ;
END;

BEGIN TREES;
      TITLE perA_all_endo_NJ;
      LINK TAXA = Taxa;
      TREE perA_gene_NJ_tree = [&R] ((((((((((((Festuca_arundinacea_Taxonomic_Group_2_NEA17_GC1:1.6357E-4,Festuca_arundinacea_Taxonomic_Group_2_NEA32_GC1:-2.0E-7)0.9660:4.9065E-4,(Uncharacterised_Neotyphodium_Species_NEA19_GC1:1.6367E-4,Uncharacterised_Neotyphodium_Species_NEA18_GC1:-3.0E-7)0.8700:3.2673E-4)0.8750:1.39E-6,Festuca_arundinacea_Taxonomic_Group_3_NEA21_GC1:-1.53E-6)0.4470:1.53E-6,Festuca_arundinacea_Taxonomic_Group_3_NEA23_GC1:-2.04E-6)1.0000:0.00249907,Festuca_arundinacea_Taxonomic_Group_3_like_NEA33_GC1:0.00225573)0.8030:5.4859E-4,(Neotyphodium_coenophialum_NEA16_GC1:-1.6E-7,(Neotyphodium_coenophialum_NEA20_GC1:-2.8E-7,(Neotyphodium_coenophialum_E34_GC1:-5.0E-7,(Neotyphodium_coenophialum_NEA14_GC1:1.6431E-4,Neotyphodium_coenophialum_NEA22_GC1:-9.1E-7)0.2140:5.0E-7)0.1400:2.8E-7)0.1840:1.6E-7)1.0000:0.00209447)1.0000:0.00693983,Epichloe_amarillans_E57_contig00045:0.00878355)1.0000:0.00346935,((((Festuca_arundinacea_Taxonomic_Group_2_NEA32_GC2:1.6635E-4,Neotyphodium_lolii_ST:3.2395E-4)0.9770:7.2529E-4,Festuca_arundinacea_Taxonomic_Group_2_NEA17_GC2:4.1992E-4)0.9470:9.783E-4,Epichloe_festucae_AB205145_Fl1:0.00189016)0.9440:7.2445E-4,(Neotyphodium_coenophialum_NEA20_GC2:3.2459E-4,(Neotyphodium_coenophialum_NEA22_GC2:1.9007E-4,(Neotyphodium_coenophialum_NEA14_GC2:3.6009E-4,(Neotyphodium_coenophialum_NEA16_GC2:0.0,Neotyphodium_coenophialum_E34_GC2:0.0)0.8820:2.937E-4)0.9510:9.5515E-4)0.8410:3.2967E-4)1.0000:0.00108064)1.0000:0.00731181)0.8900:0.00174615,(Epichloe_baconii_9707:0.01024497,(Epichloe_festucae_JN640287_E2368:0.00460965,(Uncharacterised_Neotyphodium_Species_NEA19_GC2:3.3223E-4,Uncharacterised_Neotyphodium_Species_NEA18_GC2:-5.44E-6)1.0000:0.00361003)0.9980:0.00497944)0.9660:0.00315284)1.0000:0.00499489,(Epichloe_elymi_JX402755_E56:0.00553173,(Epichloe_bromicola_JX441995_E502:0.00473783,Neotyphodium_uncinatum_E81_GC1:0.00216029)1.0000:0.01041546)1.0000:0.00533053)0.9820:0.0018426,Epichloe_brachyelytri_JN613323_E4804:0.00846902)1.0000:5.842E-5,(Epichloe_typhina_JN640289_E5819:0.01645673,((((Festuca_arundinacea_Taxonomic_Group_3_NEA21_GC2:0.0,Festuca_arundinacea_Taxonomic_Group_3_NEA23_GC2:0.0)0.9300:3.4779E-4,Festuca_arundinacea_Taxonomic_Group_3_like_NEA33_GC2:3.0607E-4)1.0000:0.0025523,(Epichloe_typhina_JX402754_E8:0.00491753,Epichloe_typhina_9636:0.00495918)0.4000:7.449E-5)0.9990:0.00148047,(Epichloe_typhina_9340:0.00208855,(Neotyphodium_coenophialum_NEA20_GC3:2.8591E-4,(Neotyphodium_coenophialum_NEA22_GC3:4.126E-5,(Neotyphodium_coenophialum_NEA16_GC3:-5.84E-6,(Neotyphodium_coenophialum_E34_GC3:1.591E-4,(Neotyphodium_coenophialum_NEA14_GC3:3.2649E-4,Neotyphodium_uncinatum_E81_GC2:9.8165E-4)0.5800:4.19E-6)0.6500:5.77E-6)0.7880:1.2216E-4)0.9060:3.681E-4)0.9600:0.0010149)1.0000:0.00195427)1.0000:0.0086572)1.0000:0.00629932)root;
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr67917]


END;