#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 16, 2024; 2:28 GMT

TreeBASE (cc) 1994-2008

Study reference:
Tretter E.D., Johnson E.M., Benny G., Lichtwardt R.W., Wang Y., Kandel P., Novak
S.J., Smith J.F., & White M.M. 2013. An eight-gene molecular phylogeny of the Kickxellomycotina,
including the first phylogenetic placement of Asellariales. Mycologia,
.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S15021]

BEGIN TAXA;
        TITLE  Mr._Bayes_Tree;
        DIMENSIONS NTAX=55;
        TAXLABELS
            Allomyces_macrogynus_ATCC_38327
            'Asellaria ligiae FL-3-W3'
            'Aspergillus nidulans FGSC-A4'
            'Aspergillus niger ATCC-1015'
            'Barbatospora ambicaudata TN-49-W4a'
            Batrachochytrium_dendrobatidis_JEL423
            'Capniomyces stellatus MIS-21-127'
            'Caudomyces sp. OR-8-W10'
            'Caudomyces sp. UT-1-W16a'
            Coelomomyces_stegomyiae_DUH0008925
            'Coemansia braziliensis NRRL-1566'
            'Coemansia reversa NRRL-1564'
            'Conidiobolus coronatus NRRL-28638'
            Coprinopsis_cinerea
            'Cryptococcus neoformans B-3501A'
            'Dimargaris bacillispora NRRL-2808'
            'Dipsacomyces acuminosporus NRRL-2925'
            Dispira_cornuta
            'Dispira parvispora NRRL-2924'
            Entomophthora_muscae_ARSEF3074
            'Genistelloides hibernus KS-19-M23'
            'Harpella melusinae NF-15-5A'
            'Harpellomyces montanus TN-22-W5B '
            'Kickxella alabastrina NRRL-2693'
            'Laccaria bicolor S238N-H82'
            'Lancisporomyces falcatus NS-X-2'
            'Legeriomyces minae PEI-X-6'
            'Linderina pennispora NRRL-3781'
            'Malassezia globosa CBS-7966'
            'Martensiomyces pterosporus NRRL-2642'
            Mucor_circinelloides_CBS277.49
            'Orphella dalhousiensis NS-34-W16'
            'Phycomyces blakesleeanus NRRL-1555'
            'Piptocephalis corymbifera NRRL-2385'
            'Pteromaktron sp. OR-11-W8'
            'Puccinia graminis CRL 75-36-700-3'
            'Ramicandelaber longisporus ARSEF-6175'
            'Ramicandelaber longisporus ARSEF-6176'
            Rhizophlyctis_rosea_JEL318
            'Rhizopus oryzae 99-880'
            'Rhopalomyces elegans NRRL A-10835'
            Saccharomyces_cerevisiae_S288c
            'Schizosaccharomyces pombe 972h-'
            'Smittium culicis 43-1-2'
            'Smittium culisetae COL-18-3'
            'Smittium morbosum AUS-X-1'
            'Smittium mucronatum FRA-12-3'
            'Smittium simulii 41-1-6'
            'Spirodactylon aureum NRRL-2810'
            'Spiromyces aspiralis NRRL-22631'
            'Spiromyces minutus NRRL-3067'
            Spizellomyces_punctatus
            'Tieghemiomyces parasiticus NRRL-2924'
            'Trichopteran trichomycete ALG-13-W1'
            Ustilago_maydis
            ;
END;

BEGIN TREES;
      TITLE Kickxellomycotina_MrBayes;
      LINK TAXA = Mr._Bayes_Tree;
      TREE BIT = [&R] (Batrachochytrium_dendrobatidis_JEL423:0.141219,(Spizellomyces_punctatus:0.057846,Rhizophlyctis_rosea_JEL318:0.084351)1.00:0.031291,((Allomyces_macrogynus_ATCC_38327:0.074451,Coelomomyces_stegomyiae_DUH0008925:0.325762)1.00:0.130012,(((((Mucor_circinelloides_CBS277.49:0.036797,'Rhizopus oryzae 99-880':0.044132)1.00:0.03177,'Phycomyces blakesleeanus NRRL-1555':0.067608)1.00:0.141318,((('Puccinia graminis CRL 75-36-700-3':0.167415,(Ustilago_maydis:0.105305,'Malassezia globosa CBS-7966':0.087693)1.00:0.063598)1.00:0.017956,((Coprinopsis_cinerea:0.026589,'Laccaria bicolor S238N-H82':0.033973)1.00:0.070823,'Cryptococcus neoformans B-3501A':0.124232)1.00:0.014729)1.00:0.039048,((('Aspergillus nidulans FGSC-A4':0.023816,'Aspergillus niger ATCC-1015':0.018931)1.00:0.114017,Saccharomyces_cerevisiae_S288c:0.144054)1.00:0.036872,'Schizosaccharomyces pombe 972h-':0.119834)1.00:0.041235)1.00:0.035154)1.00:0.016592,(('Rhopalomyces elegans NRRL A-10835':0.161726,'Piptocephalis corymbifera NRRL-2385':0.136594)1.00:0.059426,(((((((((('Coemansia reversa NRRL-1564':0.012502,'Coemansia braziliensis NRRL-1566':0.026411)1.00:0.054867,'Spirodactylon aureum NRRL-2810':0.091507)1.00:0.055163,'Kickxella alabastrina NRRL-2693':0.070799)1.00:0.051001,'Linderina pennispora NRRL-3781':0.057803)0.98:0.014099,('Dipsacomyces acuminosporus NRRL-2925':0.042824,'Martensiomyces pterosporus NRRL-2642':0.027042)1.00:0.02401)1.00:0.098744,'Orphella dalhousiensis NS-34-W16':0.13758)1.00:0.060837,('Spiromyces minutus NRRL-3067':0.05398,'Spiromyces aspiralis NRRL-22631':0.058554)1.00:0.075605)1.00:0.024546,((('Harpellomyces montanus TN-22-W5B ':0.059105,(((((('Capniomyces stellatus MIS-21-127':0.015489,'Trichopteran trichomycete ALG-13-W1':0.031156)1.00:0.011102,'Legeriomyces minae PEI-X-6':0.036791)1.00:0.011058,('Smittium culisetae COL-18-3':0.031247,'Pteromaktron sp. OR-11-W8':0.044588)1.00:0.056774)1.00:0.017282,('Lancisporomyces falcatus NS-X-2':0.019586,'Genistelloides hibernus KS-19-M23':0.046933)1.00:0.023258)1.00:0.00807,'Harpella melusinae NF-15-5A':0.076285)1.00:0.017986,(('Smittium culicis 43-1-2':0.017341,'Smittium mucronatum FRA-12-3':0.023347)1.00:0.034092,('Smittium simulii 41-1-6':0.063994,'Smittium morbosum AUS-X-1':0.072514)0.98:0.011777)1.00:0.016408)1.00:0.007566)1.00:0.01167,('Caudomyces sp. UT-1-W16a':4.31E-4,'Caudomyces sp. OR-8-W10':3.2E-4)1.00:0.051582)1.00:0.043911,'Asellaria ligiae FL-3-W3':0.44797)1.00:0.049544)1.00:0.025859,'Barbatospora ambicaudata TN-49-W4a':0.121825)1.00:0.038694,(('Ramicandelaber longisporus ARSEF-6175':8.84E-4,'Ramicandelaber longisporus ARSEF-6176':5.05E-4)1.00:0.242108,('Dimargaris bacillispora NRRL-2808':0.269154,(Dispira_cornuta:0.407847,'Dispira parvispora NRRL-2924':0.113423,'Tieghemiomyces parasiticus NRRL-2924':0.222699)0.96:0.055245)1.00:0.156838)1.00:0.034846)1.00:0.026205)1.00:0.019033)1.00:0.021234,(Entomophthora_muscae_ARSEF3074:0.236989,'Conidiobolus coronatus NRRL-28638':0.211469)1.00:0.081515)1.00:0.024043)1.00:0.042814);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr68827]


END;