#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 16, 2024; 5:27 GMT

TreeBASE (cc) 1994-2008

Study reference:
Tretter E.D., Johnson E.M., Benny G., Lichtwardt R.W., Wang Y., Kandel P., Novak
S.J., Smith J.F., & White M.M. 2013. An eight-gene molecular phylogeny of the Kickxellomycotina,
including the first phylogenetic placement of Asellariales. Mycologia,
.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S15021]

BEGIN TAXA;
        TITLE  'Maximum-Likelihood Tree';
        DIMENSIONS NTAX=55;
        TAXLABELS
            Allomyces_macrogynus_ATCC_38327
            'Asellaria ligiae FL-3-W3'
            'Aspergillus nidulans FGSC-A4'
            'Aspergillus niger ATCC-1015'
            'Barbatospora ambicaudata TN-49-W4a'
            Batrachochytrium_dendrobatidis_JEL423
            'Capniomyces stellatus MIS-21-127'
            'Caudomyces sp. OR-8-W10'
            'Caudomyces sp. UT-1-W16a'
            Coelomomyces_stegomyiae_DUH0008925
            'Coemansia braziliensis NRRL-1566'
            'Coemansia reversa NRRL-1564'
            'Conidiobolus coronatus NRRL-28638'
            Coprinopsis_cinerea
            'Cryptococcus neoformans B-3501A'
            'Dimargaris bacillispora NRRL-2808'
            'Dipsacomyces acuminosporus NRRL-2925'
            Dispira_cornuta
            'Dispira parvispora NRRL-2924'
            Entomophthora_muscae_ARSEF3074
            'Genistelloides hibernus KS-19-M23'
            'Harpella melusinae NF-15-5A'
            'Harpellomyces montanus TN-22-W5B '
            'Kickxella alabastrina NRRL-2693'
            'Laccaria bicolor S238N-H82'
            'Lancisporomyces falcatus NS-X-2'
            'Legeriomyces minae PEI-X-6'
            'Linderina pennispora NRRL-3781'
            'Malassezia globosa CBS-7966'
            'Martensiomyces pterosporus NRRL-2642'
            Mucor_circinelloides_CBS277.49
            'Orphella dalhousiensis NS-34-W16'
            'Phycomyces blakesleeanus NRRL-1555'
            'Piptocephalis corymbifera NRRL-2385'
            'Pteromaktron sp. OR-11-W8'
            'Puccinia graminis CRL 75-36-700-3'
            'Ramicandelaber longisporus ARSEF-6175'
            'Ramicandelaber longisporus ARSEF-6176'
            Rhizophlyctis_rosea_JEL318
            'Rhizopus oryzae 99-880'
            'Rhopalomyces elegans NRRL A-10835'
            Saccharomyces_cerevisiae_S288c
            'Schizosaccharomyces pombe 972h-'
            'Smittium culicis 43-1-2'
            'Smittium culisetae COL-18-3'
            'Smittium morbosum AUS-X-1'
            'Smittium mucronatum FRA-12-3'
            'Smittium simulii 41-1-6'
            'Spirodactylon aureum NRRL-2810'
            'Spiromyces aspiralis NRRL-22631'
            'Spiromyces minutus NRRL-3067'
            Spizellomyces_punctatus
            'Tieghemiomyces parasiticus NRRL-2924'
            'Trichopteran trichomycete ALG-13-W1'
            Ustilago_maydis
            ;
END;

BEGIN TREES;
      TITLE Kickxellomycotina_RAxML;
      LINK TAXA = 'Maximum-Likelihood Tree';
      TREE MLT = [&R] (Coelomomyces_stegomyiae_DUH0008925:0.4856388608835813,(((Entomophthora_muscae_ARSEF3074:0.32666111315205,'Conidiobolus coronatus NRRL-28638':0.29594840758649515)100:0.10356535601706877,((('Rhopalomyces elegans NRRL A-10835':0.21877682829117526,'Piptocephalis corymbifera NRRL-2385':0.19345829977903878)100:0.07445092997380456,(('Dimargaris bacillispora NRRL-2808':0.37087129455159945,(('Dispira parvispora NRRL-2924':0.1300443425043665,'Tieghemiomyces parasiticus NRRL-2924':0.2946891565557341)50:0.024150014645801448,Dispira_cornuta:0.604672982972303)64:0.07325245692407893)100:0.24744112694712292,(('Ramicandelaber longisporus ARSEF-6175':7.766146970647559E-4,'Ramicandelaber longisporus ARSEF-6176':4.070414750248188E-4)100:0.36445674276531737,('Barbatospora ambicaudata TN-49-W4a':0.16125043607302264,(('Asellaria ligiae FL-3-W3':0.6397085561165055,(('Harpellomyces montanus TN-22-W5B ':0.07489310719897466,(((('Smittium culisetae COL-18-3':0.034613157601447085,'Pteromaktron sp. OR-11-W8':0.059874999991205956)100:0.07663899482771372,('Legeriomyces minae PEI-X-6':0.04643927390807794,('Trichopteran trichomycete ALG-13-W1':0.03735144803813673,'Capniomyces stellatus MIS-21-127':0.01865891781464313)99:0.011387748131128778)97:0.01204905530236616)98:0.021141415378711687,('Harpella melusinae NF-15-5A':0.10061365928123775,('Lancisporomyces falcatus NS-X-2':0.022306243685230473,'Genistelloides hibernus KS-19-M23':0.05817115216691282)100:0.025725001019425476)39:0.009275542410408276)100:0.02470824220964489,(('Smittium culicis 43-1-2':0.019503751093563452,'Smittium mucronatum FRA-12-3':0.029429594518880522)100:0.04456918411123478,('Smittium simulii 41-1-6':0.07912297526266696,'Smittium morbosum AUS-X-1':0.09036793289420496)30:0.011647602215920242)95:0.018298870066750066)61:0.008958430521458156)43:0.010427877952605046,('Caudomyces sp. OR-8-W10':8.5387339351414E-7,'Caudomyces sp. UT-1-W16a':8.5387339351414E-7)100:0.07085134889814582)100:0.05506714673429817)100:0.06583136753857523,(('Orphella dalhousiensis NS-34-W16':0.1739168125954569,(('Martensiomyces pterosporus NRRL-2642':0.031149711647339175,'Dipsacomyces acuminosporus NRRL-2925':0.052566619662627705)99:0.02401514367902948,('Linderina pennispora NRRL-3781':0.07511918088155353,('Kickxella alabastrina NRRL-2693':0.0892525401632806,('Spirodactylon aureum NRRL-2810':0.11084526001425138,('Coemansia reversa NRRL-1564':0.014790764602680537,'Coemansia braziliensis NRRL-1566':0.029766828949703807)100:0.06433275995290316)100:0.07112416737902476)100:0.06685968849425529)56:0.015861345202924555)100:0.13282229295360354)100:0.08030145363635262,('Spiromyces aspiralis NRRL-22631':0.07381531957987579,'Spiromyces minutus NRRL-3067':0.06821900611809587)100:0.10143606357762018)97:0.024049679752204435)100:0.03337015841241747)100:0.039502685367820936)80:0.01719718639822945)99:0.02645652826335275)91:0.018865831947470837,(('Phycomyces blakesleeanus NRRL-1555':0.08552667914509984,(Mucor_circinelloides_CBS277.49:0.04426495395949849,'Rhizopus oryzae 99-880':0.053633690893649645)100:0.036361094957733577)100:0.1909347551198933,((((Coprinopsis_cinerea:0.027421499746073746,'Laccaria bicolor S238N-H82':0.0450516532384008)100:0.0946900202056693,'Cryptococcus neoformans B-3501A':0.16744979594384013)72:0.01878552053421103,('Puccinia graminis CRL 75-36-700-3':0.22645025937276092,(Ustilago_maydis:0.1329788456033044,'Malassezia globosa CBS-7966':0.111072649449505)100:0.08696719809035756)79:0.016571453046594777)100:0.05098552206660215,('Schizosaccharomyces pombe 972h-':0.15757917649889727,(Saccharomyces_cerevisiae_S288c:0.19371773832576283,('Aspergillus nidulans FGSC-A4':0.028548079475716137,'Aspergillus niger ATCC-1015':0.0211460904492869)100:0.1609251245240797)100:0.041258137791610194)100:0.05501054949040173)100:0.04149183909963996)97:0.022815099211554998)84:0.020672616695549186)67:0.023714512866885383,(Batrachochytrium_dendrobatidis_JEL423:0.18863249510447447,(Spizellomyces_punctatus:0.07419358960275721,Rhizophlyctis_rosea_JEL318:0.11392202558678878)100:0.03618474315918517)100:0.05752887048138431)100:0.18346133229608788,Allomyces_macrogynus_ATCC_38327:0.08987315588999414);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr68828]


END;