#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 17, 2024; 21:34 GMT

TreeBASE (cc) 1994-2008

Study reference:
Reynolds R.G., Niemiller M.L., & Revell L. 2014. Toward a Tree-of-Life for the boas
and pythons: Multilocus species-level phylogeny with unprecedented taxon sampling.
Molecular Phylogenetics and Evolution, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S14919]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=118;
        TAXLABELS
            Acrantophis_cf_dumerili
            Acrantophis_dumerili
            Acrantophis_madagascariensis
            Acrochordus_granulatus
            Anilius_scytale
            Anomochilus_leonardi
            Antaresia_childreni
            Antaresia_maculosa
            Antaresia_perthensis
            Antaresia_stimsoni_orientalis
            Aspidites_melanocephalus
            Aspidites_ramsayi
            Boa_constrictor_constrictor
            Boa_constrictor_occidentalis
            Boa_imperator
            Boa_imperator_sabogae
            Bothrochilus_albertisii
            Bothrochilus_boa
            Bothrochilus_hoserae
            Bothrochilus_papuanus
            Brachyophidium_rhodogaster
            Calabaria_reinhardtii
            Candoia_aspera_aspera
            Candoia_bibroni_bibroni
            Candoia_carinata
            Casarea_dussumieri
            Charina_bottae
            Chilabothrus_angulifer
            Chilabothrus_chrysogaster
            Chilabothrus_exsul
            Chilabothrus_fordii
            Chilabothrus_granti
            Chilabothrus_inornatus
            Chilabothrus_striatus
            Chilabothrus_strigilatus_fosteri
            Chilabothrus_strigilatus_fowleri
            Chilabothrus_strigilatus_mccraniei
            Chilabothrus_strigilatus_strigilatus
            Chilabothrus_subflavus
            Corallus_annulatus
            Corallus_caninus
            Corallus_hortulanus
            Cylindrophis_maculatus
            Cylindrophis_ruffus
            Epicrates_alvarezi
            Epicrates_assisi
            Epicrates_cenchria
            Epicrates_crassus
            Epicrates_maurus
            Eryx_colubrinus_colubrinus
            Eryx_conicus
            Eryx_elegans
            Eryx_jaculus
            Eryx_jayakari
            Eryx_johnii
            Eryx_miliaris
            Eryx_miliaris_nogaiorum
            Eryx_tataricus
            Eryx_tataricus_vittatus
            Eunectes_murinus
            Eunectes_notaeus
            Exiliboa_placata
            Liasis_fuscus
            Liasis_mackloti_mackloti
            Liasis_mackloti_savuensis
            Liasis_olivaceus_olivaceus
            Lichanura_trivirgata
            Liotyphlops_albirostris
            Loxocemus_bicolor
            Malayopython_reticulatus
            Malayopython_reticulatus_jampeanus
            Malayopython_reticulatus_saputrai
            Malayopython_timoriensis
            Melanophidium_punctatum
            Morelia_bredli
            Morelia_carinata
            Morelia_spilota_spilota
            Morelia_spilota_variegata
            Morelia_viridis
            Python_bivittatus_bivittatus
            Python_brongersmai
            Python_curtus
            Python_molurus_molurus
            Python_regius
            Python_sebae
            Rhinophis_blythii
            Rhinophis_dorsimaculatus
            Rhinophis_drummondhayi
            Rhinophis_homolepis
            Rhinophis_oxyrhynchus
            Rhinophis_philippinus
            Rhinophis_travancoricus
            Sanzinia_madagascariensis_madagascariensis
            Sanzinia_volontany
            Simalia_amethistina
            Simalia_boeleni
            Simalia_clastolepis
            Simalia_kinghorni
            Simalia_nauta
            Simalia_oenpelliensis
            Simalia_tracyae
            Trachyboa_boulengeri
            Trachyboa_gularis
            Tropidophis_feicki
            Tropidophis_greenwayi
            Tropidophis_haetianus
            Tropidophis_melanurus_melanurus
            Tropidophis_pardalis
            Tropidophis_wrighti
            Typhlops_jamaicensis
            Ungaliophis_continentalis
            Uropeltis_ceylanica
            Uropeltis_liura
            Uropeltis_melanogaster
            Uropeltis_phillipsi
            Uropeltis_sp
            Xenopeltis_unicolor
            Xenophidion_schaeferi
            ;
END;

BEGIN TREES;
      TITLE Python_Bayesian_Result;
      LINK TAXA = Taxa;
      TREE con_50_majrule = [&R] ((Acrochordus_granulatus:0.3439771457662572,Typhlops_jamaicensis:0.9801980487838149):0.040220580686851914,((Anomochilus_leonardi:0.07363046324770647,(Melanophidium_punctatum:0.08815866241895702,(Brachyophidium_rhodogaster:0.08315352902616785,(Rhinophis_oxyrhynchus:0.04324374856222817,((Rhinophis_dorsimaculatus:0.02820096157137657,Rhinophis_travancoricus:0.1425541661209015):0.01483897273246448,(Rhinophis_philippinus:0.05620998938959428,(Rhinophis_homolepis:0.04222015329004827,(Rhinophis_blythii:0.03930142897932676,Rhinophis_drummondhayi:0.02419346861017648):0.01638131165551443):0.01660597394392063):0.007858627248644853):0.02940345872163955):0.1178559357322768):0.05306213150211751):0.06487372558469824):0.5879199372484477,(((Cylindrophis_maculatus:0.06656190474436197,Cylindrophis_ruffus:0.08649218045653805):0.02269562631435156,(Uropeltis_ceylanica:0.08713072758624033,(Uropeltis_liura:0.02398509492671787,Uropeltis_sp:0.02408619277934544):0.0181569969209482,(Uropeltis_melanogaster:0.01721832498016757,Uropeltis_phillipsi:0.007932407828481852):0.1210040083470843):0.06505521259705276):0.06181774992037584,((Casarea_dussumieri:0.2195292490291036,Xenophidion_schaeferi:0.1946089800265048):0.05154469869834062,(Liotyphlops_albirostris:0.8846434813584624,(Anilius_scytale:0.2268262426842261,((Trachyboa_boulengeri:0.01455646692249027,Trachyboa_gularis:0.01922115107674226):0.04930023422383717,((Tropidophis_greenwayi:0.05681572507658928,Tropidophis_haetianus:0.07788115643581595):0.01774436744860525,(Tropidophis_feicki:0.05262022899256127,(Tropidophis_melanurus_melanurus:0.03998123522423749,(Tropidophis_pardalis:0.003296277169306925,Tropidophis_wrighti:0.00619440974066668):0.02821820754162726):0.01381109094639942):0.01407957501436613):0.03094442735581366):0.1625547824011525):0.03820921515925485):0.03053800852166584):0.01153623842643148,(Xenopeltis_unicolor:0.1823315830542176,(Loxocemus_bicolor:0.1633053921391426,((Python_regius:0.06500136021138954,((Python_brongersmai:0.04043541156400779,Python_curtus:0.03913624609208031):0.01265908046779002,(Python_sebae:0.06082370782619305,(Python_bivittatus_bivittatus:0.02567147756911794,Python_molurus_molurus:0.01131287933163136):0.0381414862810812):0.008981723180021533):0.01601696042108548):0.01726464290538551,((Malayopython_timoriensis:0.03618919216814681,(Malayopython_reticulatus:0.003594062334292667,(Malayopython_reticulatus_jampeanus:0.001694622000176176,Malayopython_reticulatus_saputrai:0.01197894261703479):0.01847799771729758):0.03217349159907887):0.02458340988136291,(((Antaresia_childreni:0.0112082173886603,Antaresia_stimsoni_orientalis:0.01010859768444911):0.01876883089551345,(Morelia_carinata:0.03559557600691671,Morelia_viridis:0.04035415342911148):0.005758573828806446,((Antaresia_maculosa:0.04341976972663773,Antaresia_perthensis:0.03711165241697528):0.007014772791836689,(Morelia_bredli:0.01224899866287052,(Morelia_spilota_spilota:0.008630125316172703,Morelia_spilota_variegata:0.007162503957085112):0.004987301463150783):0.01794414703652029):0.004731033627322851):0.007248938932941669,(Simalia_oenpelliensis:0.04155037725973127,(Simalia_boeleni:0.03169951291077104,(Simalia_tracyae:0.01511635248879518,(Simalia_amethistina:0.0135329222772148,(Simalia_clastolepis:0.002585771613920702,(Simalia_kinghorni:0.003084946931725183,Simalia_nauta:0.002671178780438217):0.001836699434197769):0.006860603979804451):0.008210955907583856):0.01121948264472853):0.008938423347667816,((Bothrochilus_boa:0.03082260267090937,(Bothrochilus_albertisii:0.003114950886614648,Bothrochilus_hoserae:0.00304939920329542):0.02117265621144628):0.02019503583566429,((Aspidites_melanocephalus:0.02914998910303805,Aspidites_ramsayi:0.01621107992692684):0.0208008331947437,(Liasis_olivaceus_olivaceus:0.02427582449460656,(Bothrochilus_papuanus:0.03547908950249979,(Liasis_fuscus:0.01017155826423901,Liasis_mackloti_mackloti:0.004128691221429731,Liasis_mackloti_savuensis:0.003520549324455884):0.02311168913682498):0.004313381484773209):0.01005824774247154):0.005151698116020561):0.00252551494249552):0.002819781419456138):0.009459022089658825):0.005177763375521041):0.05611019427437113):0.05320356405822028):0.02026653028083006,((Calabaria_reinhardtii:0.1983756761854398,((Sanzinia_madagascariensis_madagascariensis:0.02386714260692296,Sanzinia_volontany:0.02535414066678333):0.01451353894207959,(Acrantophis_cf_dumerili:0.0144279488172457,(Acrantophis_dumerili:0.002314409703040182,Acrantophis_madagascariensis:0.002867008417262759):0.00922510124961249):0.03040211830835912):0.08597325061105703):0.01301168175850832,(((Charina_bottae:0.05294087063953261,Lichanura_trivirgata:0.05797444585450433):0.04355653634378881,(Exiliboa_placata:0.09382187176261639,Ungaliophis_continentalis:0.1138524392502253):0.03093614869793566):0.01517599086431136,((Eryx_jayakari:0.1970192834120001,(Eryx_colubrinus_colubrinus:0.06861273636580367,((Eryx_conicus:0.05456080139360798,Eryx_johnii:0.02521574030621508):0.02538062777328659,(Eryx_jaculus:0.02991268449708062,(Eryx_elegans:0.04493865278599088,(Eryx_tataricus:0.005193722939417009,(Eryx_miliaris:0.001783281669614199,Eryx_miliaris_nogaiorum:0.003861707714121297,Eryx_tataricus_vittatus:0.01513866654939069):0.002405258863355554):0.02975789117534556):0.009850021423645857):0.01156513528078403):0.00640535965216027):0.02121362707612106):0.05407489420316941,((Candoia_bibroni_bibroni:0.05916305476791812,(Candoia_aspera_aspera:0.05493388846077032,Candoia_carinata:0.04272212752277706):0.01662252160847578):0.06710144977113773,((Boa_constrictor_constrictor:0.004062654424595243,(Boa_constrictor_occidentalis:0.006961422160865301,(Boa_imperator:0.001150022760178964,Boa_imperator_sabogae:5.46749737763724E-4):0.01813555978408888):0.006742542897336549):0.1034382030962966,(Corallus_caninus:0.08554054481605688,((Corallus_annulatus:0.06466936954204676,Corallus_hortulanus:0.0517812341195618):0.02792249544516131,(((Eunectes_murinus:0.03421356149335684,Eunectes_notaeus:0.02219594861455942):0.04348714402676202,(Epicrates_alvarezi:0.0311184305989344,((Epicrates_assisi:0.008628919560744604,Epicrates_crassus:0.00992752735707216):0.01859619495036179,(Epicrates_cenchria:0.004679834067636309,Epicrates_maurus:0.005575078975708918):0.008985312830245888):0.01530730742651334):0.02359115617526628):0.01157953566858155,((Chilabothrus_angulifer:0.03533444448756845,(Chilabothrus_granti:0.02705948941422018,Chilabothrus_inornatus:0.02749715740514748):0.01412170637755341):0.008064665416388136,(Chilabothrus_subflavus:0.03186731952922951,(Chilabothrus_fordii:0.03465183646746859,(Chilabothrus_chrysogaster:0.01005696501096825,(Chilabothrus_exsul:0.00433865928900799,Chilabothrus_striatus:0.005013341310350894,((Chilabothrus_strigilatus_fosteri:1.5435755090601E-4,Chilabothrus_strigilatus_fowleri:3.675851340005463E-4):0.001254981865710335,(Chilabothrus_strigilatus_mccraniei:0.001833322926667186,Chilabothrus_strigilatus_strigilatus:0.001086772363763188):7.626837433287994E-4):0.005010664208486861):0.00539076280538968):0.0242054708167305):0.005861699934423324):0.01470793308487424):0.01451128426530983):0.01355350687203291):0.01826650309255323):0.01834418769294455):0.01739445299328074):0.01117799153185823):0.005433574394484291):0.01381486472203777):0.07234794831474986):1.215595542822812):0.040220580686851914);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr68981]


END;