#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 25, 2024; 4:25 GMT TreeBASE (cc) 1994-2008 Study reference: Becker A.A., Hesta M., Hollants J., Janssens G.P., & Huys G. 2014. Phylogenetic analysis of faecal microbiota from captive cheetahs reveals underrepresentation of Bacteroidetes and Bifidobacteriaceae. BMC Microbiology, 14(43). TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S15139] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=89; TAXLABELS Bacteria_sp._OTU_46 Bacteria_sp._OTU_48 Blautia_coccoides_JCM_1395 Blautia_glucerasei_HFTH_1 Blautia_hansenii_JCM_14655 Carnobacterium_divergens_DSM_20623 Cellulosilyticum_ruminicola_H1 Clostridiaceae_sp._OTU_01 Clostridiaceae_sp._OTU_02 Clostridiaceae_sp._OTU_03 Clostridiaceae_sp._OTU_05 Clostridiaceae_sp._OTU_09 Clostridiaceae_sp._OTU_21 Clostridiaceae_sp._OTU_30 Clostridiaceae_sp._OTU_31 Clostridiaceae_sp._OTU_32 Clostridiaceae_sp._OTU_33 Clostridiaceae_sp._OTU_34 Clostridiales_Incertae_sedis_XIV_OTU_10 Clostridiales_Incertae_sedis_XIV_OTU_12 Clostridiales_Incertae_sedis_XIV_OTU_13 Clostridiales_sp._OTU_38 Clostridiales_sp._OTU_39 Clostridiales_sp._OTU_47 Clostridium_bolteae_DSM_15670 Clostridium_colicanis_DSM_13634 Clostridium_fallax_ATCC_19400 Clostridium_glycolicum_DSM_1288 Clostridium_glycyrrhizinilyticum_ZM35 Clostridium_hiranonis_TO_931 Clostridium_lituseburense_ATCC_25759 Clostridium_perfringens_ATCC_13124 Clostridium_sardiniense_DSM_2632 Clostridium_subterminale_DSM_6970 Collinsella_stercoris_RCA55_54 Collinsella_tanakaei_YIT_12063 Coprococcus_comes_ATCC_27758 Coriobacteriaceae_sp._OTU_17 Curtobacterium_luteum_DSM_20542 Desulfonispora_thiosulfatigenes_DSM_11270 Eggerthella_hongkongensis_HKU10 Eggerthella_sinensis_HKU14 Enterobacteriaceae_sp._OTU_14 Enterococcaceae_sp._OTU_23 Enterococcaceae_sp._OTU_24 Enterococcaceae_sp._OTU_25 Enterococcus_cecorum_ATCC_43198 Enterococcus_faecalis_JCM_5803 Enterococcus_hirae_DSM_20160 Erysipelotrichales_sp._OTU_28 Erysipelotrichales_sp._OTU_41 Eubacteriaceae_sp._OTU_04 Eubacterium_cylindroides_ATCC_27803 Eubacterium_multiforme_JCM_6484 Eubacterium_tenue_ATCC_25553 Fusobacteria_sp._OTU_45 Fusobacterium_mortiferum_ATCC_25557 Hydrogenoanaerobacterium_saccharovorans_SW512 Lachnospiraceae_sp._OTU_08 Lachnospiraceae_sp._OTU_11 Lachnospiraceae_sp._OTU_40 Lactobacillaceae_sp._OTU_15 Lactobacillaceae_sp._OTU_16 Lactobacillaceae_sp._OTU_26 Lactobacillaceae_sp._OTU_42 Lactobacillus_animalis_NBRC_15882 Lactobacillus_mucosae_CCUG_43179 Lactobacillus_sakei_DSM_20017 Lactococcus_piscium_CCUG_32732 Microbacteriaceae_sp._OTU_18 Microbacteriaceae_sp._OTU_22 Microbacteriaceae_sp._OTU_29 Microbacteriaceae_sp._OTU_43 Microbacteriaceae_sp._OTU_44 Peptococcaceae_sp._OTU_06 Peptostreptococcaceae_sp._OTU_36 Peptostreptococcaceae_sp._OTU_37 Peptostreptococcus_anaerobius_NCTC_11460 Peptostreptococcus_stomatis_W2278 Ruminococcaceae_sp._OTU_07 Ruminococcaceae_sp._OTU_19 Ruminococcaceae_sp._OTU_20 Ruminococcaceae_sp._OTU_35 Ruminococcus_gnavus_ATCC_29149 Ruminococcus_torques_ATCC_27756 Shigella_flexneri_ATCC_29903 Slackia_faecicanis_CCUG_48399 Streptococcaceae_sp._OTU_27 Turicibacter_sanguinis_DSM_14220 ; END; BEGIN TREES; TITLE Bacteria_in_Captive_Cheetahs; LINK TAXA = Taxa; TREE Fig._2 = [&R] ((Bacteria_sp._OTU_48:0.2924687,Bacteria_sp._OTU_46:0.17515526)0.8470:0.046622775,(((Lachnospiraceae_sp._OTU_11:0.0482012,((Blautia_coccoides_JCM_1395:0.02356287,(Clostridiales_Incertae_sedis_XIV_OTU_10:0.01403064,Blautia_hansenii_JCM_14655:0.00206007)1.0000:0.0319161)0.3850:0.0112442,((Clostridium_bolteae_DSM_15670:0.02246301,Clostridiaceae_sp._OTU_21:0.052128)0.7620:0.01369383,(Blautia_glucerasei_HFTH_1:0.00922496,(Clostridiales_Incertae_sedis_XIV_OTU_12:0.01708889,Clostridiales_Incertae_sedis_XIV_OTU_13:0.02603599)0.7640:0.00893549)0.9980:0.04182912)0.5890:0.00514848)0.3030:9.3079E-4)0.2580:0.00728314,((Ruminococcaceae_sp._OTU_19:0.02744346,(Ruminococcaceae_sp._OTU_07:0.01514812,Ruminococcus_gnavus_ATCC_29149:0.00575039)0.9610:0.01173629)0.5080:0.00894174,((Coprococcus_comes_ATCC_27758:0.01837573,Lachnospiraceae_sp._OTU_08:0.02984239)0.7600:0.01483682,(Ruminococcus_torques_ATCC_27756:0.01914937,(Ruminococcaceae_sp._OTU_20:0.01917024,(Clostridium_glycyrrhizinilyticum_ZM35:-0.00457623,Clostridiaceae_sp._OTU_09:0.00702524)0.9280:0.0105231)0.8410:0.0129965)0.9380:0.00829083)0.6680:4.4267E-4)0.3060:0.00918446)0.8830:0.0454453,((((Clostridium_fallax_ATCC_19400:0.0019199,(Clostridiaceae_sp._OTU_34:0.00336388)0.5680:0.0021119)1.0000:0.03811539,((Clostridium_perfringens_ATCC_13124:6.3318E-4,Clostridiaceae_sp._OTU_02:0.00180181)0.9700:0.03544893,((Clostridium_subterminale_DSM_6970:0.00706591,Clostridiaceae_sp._OTU_33:0.02634437)0.9970:0.02947303,((Clostridium_colicanis_DSM_13634:-0.00706812,Clostridiaceae_sp._OTU_32:0.00935997)1.0000:0.02174902,(Clostridium_sardiniense_DSM_2632:0.00544167,((Eubacterium_multiforme_JCM_6484:-0.00313008,Clostridiaceae_sp._OTU_31:0.01023395)0.6380:0.00740036,(Clostridiaceae_sp._OTU_01:-0.01730636,Clostridiaceae_sp._OTU_30:0.04576134)0.9000:0.01639848)0.6520:0.00550816)0.9770:0.01579111)0.8920:0.01112826)0.6070:0.00453899)0.4800:0.00737572)0.8450:0.05740477,((Peptostreptococcaceae_sp._OTU_36:0.05895927,(Peptostreptococcaceae_sp._OTU_37:0.04600653,(Peptostreptococcus_anaerobius_NCTC_11460:0.00459371,Peptostreptococcus_stomatis_W2278:0.0179779)0.7210:0.00396347)0.8030:0.01488775)0.9980:0.037566,((Clostridium_glycolicum_DSM_1288:0.00660691,Clostridiaceae_sp._OTU_05:0.01073696)0.9590:0.01508543,(Clostridium_lituseburense_ATCC_25759:0.01677243,((Clostridiales_sp._OTU_39:0.00372043,(Clostridiales_sp._OTU_38:-0.03042671,Clostridiales_sp._OTU_47:0.17613833)0.9990:0.02954791)0.8080:0.02069298,((Clostridium_hiranonis_TO_931:-9.8184E-4,Clostridiaceae_sp._OTU_03:9.8184E-4)0.9980:0.02900901,(Eubacterium_tenue_ATCC_25553:-0.01421577,Eubacteriaceae_sp._OTU_04:0.02631179)0.5050:0.0145532)0.3870:-0.00624003)0.4180:0.01270635)0.8800:0.00598557)0.6830:0.01363634)0.9990:0.05953169)0.2530:0.00645026,(((Cellulosilyticum_ruminicola_H1:0.03303771,Lachnospiraceae_sp._OTU_40:0.04171283)0.9920:0.04588495,(Hydrogenoanaerobacterium_saccharovorans_SW512:0.05088058,Ruminococcaceae_sp._OTU_35:0.04771736)1.0000:0.06273678)0.7610:0.01959611,((((Fusobacterium_mortiferum_ATCC_25557:0.01227412,Fusobacteria_sp._OTU_45:0.03290873)1.0000:0.13838261,(Enterobacteriaceae_sp._OTU_14:0.01535966,Shigella_flexneri_ATCC_29903:-0.0057895)1.0000:0.1922883)0.9540:0.02816631,((Curtobacterium_luteum_DSM_20542:0.01777727,Microbacteriaceae_sp._OTU_22:0.03045021)1.0000:0.07804466,((Collinsella_tanakaei_YIT_12063:0.0207699,(Collinsella_stercoris_RCA55_54:-0.00236457,(Coriobacteriaceae_sp._OTU_17:0.02985782,Microbacteriaceae_sp._OTU_18:0.01995492)0.7210:0.00948149)0.9900:0.02165619)1.0000:0.05721341,((Microbacteriaceae_sp._OTU_44:0.0530434,Slackia_faecicanis_CCUG_48399:0.02664034)0.8920:0.0137854,(Microbacteriaceae_sp._OTU_29:0.04979658,(Eggerthella_sinensis_HKU14:0.02329428,(Microbacteriaceae_sp._OTU_43:0.02657274,Eggerthella_hongkongensis_HKU10:0.01282972)0.9990:0.02655792)0.7970:0.00997165)0.8730:0.0158319)0.7850:0.01014053)1.0000:0.08934236)0.9640:0.03644556)0.5820:0.01325698,(Peptococcaceae_sp._OTU_06:0.12291209,(Desulfonispora_thiosulfatigenes_DSM_11270:0.10064382,(((Eubacterium_cylindroides_ATCC_27803:0.03837186,Erysipelotrichales_sp._OTU_28:0.03654459)1.0000:0.08184952,(Erysipelotrichales_sp._OTU_41:0.01312417,Turicibacter_sanguinis_DSM_14220:-0.00820223)1.0000:0.07518264)0.7980:0.01451751,((Lactococcus_piscium_CCUG_32732:-0.00401438,Streptococcaceae_sp._OTU_27:0.00919296)1.0000:0.11376093,(((Lactobacillus_mucosae_CCUG_43179:-0.00982746,Lactobacillaceae_sp._OTU_42:0.0147056)1.0000:0.09616331,(Lactobacillaceae_sp._OTU_26:0.00759235,Lactobacillus_animalis_NBRC_15882:-0.00515528)1.0000:0.06522219)0.6390:0.00888642,(((Carnobacterium_divergens_DSM_20623:-0.01463012,Lactobacillaceae_sp._OTU_16:0.02088069)1.0000:0.05095464,(Lactobacillaceae_sp._OTU_15:0.01307707,Lactobacillus_sakei_DSM_20017:-0.01307707)1.0000:0.05781815)0.8830:0.01980776,((Enterococcaceae_sp._OTU_25:0.00943978,Enterococcus_cecorum_ATCC_43198:-0.00700271)1.0000:0.04697978,((Enterococcus_hirae_DSM_20160:-0.01407858,Enterococcaceae_sp._OTU_24:0.02633369)1.0000:0.03497677,(Enterococcaceae_sp._OTU_23:0.01047222,Enterococcus_faecalis_JCM_5803:-0.01047222)1.0000:0.0349093)0.6740:0.01228219)0.9640:0.01942527)0.8250:0.01747723)0.7330:0.00309278)0.7960:0.02065823)0.9040:0.01585115)0.5370:0.01826945)0.6370:0.00509105)0.2510:0.00542046)0.3590:0.00331359)0.3740:0.02273492):0.046622775); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr70737] END;