#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 17, 2024; 23:15 GMT

TreeBASE (cc) 1994-2008

Study reference:
Zúñiga-vega J.J., Ingley S.J., Unmack P.J., & Johnson J.B. 2014. Do freshwater ecoregions
and continental shelf width predict patterns of historical gene flow in
the freshwater fish Poecilia butleri?. Biological Journal of the Linnean Society,
.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S15469]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=51;
        TAXLABELS
            Poecilia_butleri_H1_PB0753.1
            Poecilia_butleri_H10_PB0744.3
            Poecilia_butleri_H11_PB0741.1
            Poecilia_butleri_H12_PB0738.1
            Poecilia_butleri_H13_PB0735.2
            Poecilia_butleri_H14_PB0737.1
            Poecilia_butleri_H15_PB0737.3
            Poecilia_butleri_H16_PB0736.1
            Poecilia_butleri_H17_PB0736.4
            Poecilia_butleri_H18_PB0735.1
            Poecilia_butleri_H19_PB0735.4
            Poecilia_butleri_H2_PB0752.3
            Poecilia_butleri_H20_PB0735.6
            Poecilia_butleri_H21_PB0735.7
            Poecilia_butleri_H22_PB0735.8
            Poecilia_butleri_H23_PB0734.1
            Poecilia_butleri_H24_PB0734.2
            Poecilia_butleri_H25_PB0602.4
            Poecilia_butleri_H26_PB0733.1
            Poecilia_butleri_H27_PB0601.1
            Poecilia_butleri_H28_PB0602.2
            Poecilia_butleri_H29_PB0602.8
            Poecilia_butleri_H3_PB0752.4
            Poecilia_butleri_H30_PB0605.1
            Poecilia_butleri_H31_PB0714.3
            Poecilia_butleri_H32_PB0714.4
            Poecilia_butleri_H33_PB0708.3
            Poecilia_butleri_H34_PB0716.1
            Poecilia_butleri_H35_PB0719.5
            Poecilia_butleri_H36_PB0613.7
            Poecilia_butleri_H37_PB0612.2
            Poecilia_butleri_H38_PB0808.1
            Poecilia_butleri_H39_PB0808.3
            Poecilia_butleri_H4_PB0751.1
            Poecilia_butleri_H40_PB0808.5
            Poecilia_butleri_H41_PB0809.1
            Poecilia_butleri_H42_PB0809.3
            Poecilia_butleri_H43_PB0810.1
            Poecilia_butleri_H44_PB0810.4
            Poecilia_butleri_H45_PB0810.6
            Poecilia_butleri_H46_PB0810.8
            Poecilia_butleri_H47_PB0801.2
            Poecilia_butleri_H48_PB0802.1
            Poecilia_butleri_H49_PB0802.2
            Poecilia_butleri_H5_PB0751.8
            Poecilia_butleri_H50_PB0804.1
            Poecilia_butleri_H6_PB0743.1
            Poecilia_butleri_H7_PB0749.1
            Poecilia_butleri_H8_PB0744.1
            Poecilia_butleri_H9_PB0741.4
            Poecilia_gillii_FJ446154
            ;
END;

BEGIN TREES;
      TITLE Poecilia_butleri_2_cytb_haplotype_phylogeny;
      LINK TAXA = Taxa;
      TREE PHYLIP = [&U] (Poecilia_gillii_FJ446154:0.016725,((Poecilia_butleri_H47_PB0801.2:0.004646,((Poecilia_butleri_H48_PB0802.1:8.79E-4,(Poecilia_butleri_H49_PB0802.2:3.0E-6,(Poecilia_butleri_H46_PB0810.8:8.86E-4,((Poecilia_butleri_H42_PB0809.3:8.8E-4,Poecilia_butleri_H45_PB0810.6:8.86E-4)12:3.0E-6,(Poecilia_butleri_H41_PB0809.1:3.0E-6,(Poecilia_butleri_H43_PB0810.1:8.85E-4,Poecilia_butleri_H44_PB0810.4:8.86E-4)8:3.0E-6)4:3.0E-6)13:3.0E-6)65:8.85E-4)36:3.0E-6)99:0.004512,((Poecilia_butleri_H50_PB0804.1:0.00634,Poecilia_butleri_H40_PB0808.5:0.006418)60:9.17E-4,((Poecilia_butleri_H38_PB0808.1:0.001814,Poecilia_butleri_H39_PB0808.3:3.0E-6)89:0.001801,(Poecilia_butleri_H34_PB0716.1:8.98E-4,(Poecilia_butleri_H33_PB0708.3:8.99E-4,(Poecilia_butleri_H30_PB0605.1:3.0E-6,(Poecilia_butleri_H35_PB0719.5:8.99E-4,(Poecilia_butleri_H37_PB0612.2:8.99E-4,(Poecilia_butleri_H36_PB0613.7:3.0E-6,(Poecilia_butleri_H31_PB0714.3:0.001792,Poecilia_butleri_H32_PB0714.4:0.002694)35:3.0E-6)17:3.0E-6)66:8.99E-4)12:3.0E-6)4:3.0E-6)18:3.0E-6)88:0.001801)19:3.0E-6)19:3.0E-6)50:8.24E-4)99:0.011879,(Poecilia_butleri_H1_PB0753.1:0.005473,(Poecilia_butleri_H24_PB0734.2:0.004303,((Poecilia_butleri_H6_PB0743.1:8.91E-4,(Poecilia_butleri_H11_PB0741.1:8.86E-4,Poecilia_butleri_H9_PB0741.4:3.0E-6)35:3.0E-6)69:8.87E-4,((Poecilia_butleri_H17_PB0736.4:0.00361,((Poecilia_butleri_H15_PB0737.3:3.0E-6,Poecilia_butleri_H12_PB0738.1:8.74E-4)47:3.0E-6,(Poecilia_butleri_H7_PB0749.1:3.0E-6,(Poecilia_butleri_H5_PB0751.8:8.64E-4,(Poecilia_butleri_H4_PB0751.1:3.0E-6,Poecilia_butleri_H2_PB0752.3:8.52E-4)90:0.00172)15:3.0E-6)67:8.69E-4)81:0.001766)17:3.0E-6,(Poecilia_butleri_H14_PB0737.1:8.87E-4,(Poecilia_butleri_H21_PB0735.7:8.88E-4,(Poecilia_butleri_H23_PB0734.1:3.0E-6,((Poecilia_butleri_H28_PB0602.2:8.7E-4,(Poecilia_butleri_H27_PB0601.1:3.0E-6,(Poecilia_butleri_H29_PB0602.8:8.75E-4,Poecilia_butleri_H26_PB0733.1:8.76E-4)15:3.0E-6)22:3.0E-6)53:8.82E-4,(Poecilia_butleri_H22_PB0735.8:8.87E-4,((Poecilia_butleri_H25_PB0602.4:8.87E-4,(Poecilia_butleri_H18_PB0735.1:3.0E-6,Poecilia_butleri_H19_PB0735.4:8.81E-4)69:8.87E-4)7:3.0E-6,(Poecilia_butleri_H13_PB0735.2:3.0E-6,((Poecilia_butleri_H20_PB0735.6:8.87E-4,Poecilia_butleri_H3_PB0752.4:8.81E-4)7:3.0E-6,(Poecilia_butleri_H16_PB0736.1:0.001779,(Poecilia_butleri_H8_PB0744.1:3.0E-6,Poecilia_butleri_H10_PB0744.3:8.75E-4)69:8.81E-4)13:3.0E-6)1:3.0E-6)0:3.0E-6)7:3.0E-6)66:8.87E-4)9:3.0E-6)7:3.0E-6)58:8.87E-4)7:3.0E-6)12:3.0E-6)97:0.003008)81:0.001713)100:0.013151):0.016725) [%setBetweenBits = impossible unrooted = on ];
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr71057]


END;