#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on April 25, 2024; 17:31 GMT

TreeBASE (cc) 1994-2008

Study reference:
Lei B., & Olival K.J. 2014. Contrasting Patterns in Mammal–Bacteria Coevolution:
Bartonella and Leptospira in Bats and Rodents. PLOS Neglected Tropical Diseases,
.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S15643]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=52;
        TAXLABELS
            Bartonella_sp._B29042_ex._Desmodus_rotundus_HM597187
            Bartonella_sp._B29043_ex._Desmodus_rotundus_HM597188
            Bartonella_sp._B29044_ex._Desmodus_rotundus_HM597189
            Bartonella_sp._B29102_ex._Pteronotus_davyi_HM597193
            Bartonella_sp._B29105_ex._Pteronotus_davyi_HM597203
            Bartonella_sp._B29107_ex._Desmodus_rotundus_HM597190
            Bartonella_sp._B29108_ex._Desmodus_rotundus_HM597191
            Bartonella_sp._B29109_ex._Pteronotus_davyi_HM597194
            Bartonella_sp._B29110_ex._Glossophaga_soricina_HM597202
            Bartonella_sp._B29111_ex._Artibeus_toltecus_HM597197
            Bartonella_sp._B29112_ex._Phyllostomus_hastatus_HM597204
            Bartonella_sp._B29114_ex._Desmodus_rotundus_HM597192
            Bartonella_sp._B29115_ex._Phyllostomus_hastatus_HM597201
            Bartonella_sp._B29116_ex._Phyllostomus_hastatus_HM597198
            Bartonella_sp._B29119_ex._Desmodus_rotundus_HM597195
            Bartonella_sp._B29122_ex._Desmodus_rotundus_HM597196
            Bartonella_sp._B29126_ex._Carollia_perspicillata_HM597199
            Bartonella_sp._B29134_ex._Pteronotus_davyi_HM597205
            Bartonella_sp._B29137_ex._Sturnira_lilium_HM597206
            Bartonella_sp._B29172_ex._Micronycteris_microtis_HM597207
            Bartonella_sp._B29230_ex._Phyllostomus_hastatus_HM597200
            Bartonella_sp._B32851_ex._Artibeus_obscurus_JQ071380
            Bartonella_sp._B32854_ex._Phyllostomus_hastatus_JQ071388
            Bartonella_sp._B32855_ex._Desmodus_rotundus_JQ071378
            Bartonella_sp._B32856_ex._Vampyressa_bidens_JQ071389
            Bartonella_sp._B32943_ex._Carollia_perspicillata_JQ071384
            Bartonella_sp._B32946_ex._Glossophaga_soricina_JQ071383
            Bartonella_sp._B32947_ex._Phyllostomus_hastatus_JQ071387
            Bartonella_sp._B32953_ex._Artibeus_planirostris_JQ071381
            Bartonella_sp._B32954_ex._Artibeus_planirostris_JQ071382
            Bartonella_sp._B32955_ex._Carollia_perspicillata_JQ071385
            Bartonella_sp._B32960_ex._Carollia_perspicillata_JQ071386
            Bartonella_sp._Bc37076_ex._Brachyphylla_cavernarum
            'Bartonella sp. C-583 ex. Coleura afra HM545136'
            'Bartonella sp. E1-105 ex. Eidolon helvum HM363765'
            'Bartonella sp. E2-114 ex. Eidolon helvum HM363766'
            'Bartonella sp. E3-106 ex. Eidolon helvum HM363767'
            'Bartonella sp. Ew-111 ex. Eidolon helvum HM363768'
            'Bartonella sp. H-556 ex. Hipposideros armiger HM545137'
            Bartonella_sp._Mr37075_ex._Monophyllus_redmani
            Bartonella_sp._Mr37077_ex._Monophyllus_redmani
            Bartonella_sp._Mr37078_ex._Monophyllus_redmani
            Bartonella_sp._Mr37079_ex._Monophyllus_redmani
            Bartonella_sp._No.05_ex._Miniopterus_schreibersii_JF500511
            Bartonella_sp._No.16_ex._Miniopterus_schreibersii_JF500522
            'Bartonella sp. R-191 ex. Rousettus aegyptiacus HM363764'
            'Bartonella sp. T-837 ex. Triaenops persicus HM545138'
            Bartonella_sp._ex._Artibeus_jamaicensis_AJ37081
            Bartonella_sp._ex._Myotis_daubentoni_AJ871613
            Bartonella_sp._ex._Myotis_mystacinus_AJ871612
            Bartonella_sp._ex._Nyctalus_noctula_AJ871615
            Brucella_melitensis
            ;
END;

BEGIN TREES;
      TITLE Bartonella_sp._citrate_synthase;
      LINK TAXA = Taxa;
      TREE 'Imported tree 0+' = [&R] (Brucella_melitensis:0.3308821857297412,((Bartonella_sp._B29134_ex._Pteronotus_davyi_HM597205:0.05548791096522709,(Bartonella_sp._Bc37076_ex._Brachyphylla_cavernarum:0.02845340816399157,Bartonella_sp._Mr37079_ex._Monophyllus_redmani:0.05579582885440218)84:0.01456172844250038)92:0.03328282000694964,((Bartonella_sp._B29137_ex._Sturnira_lilium_HM597206:0.0335992724614113,((Bartonella_sp._B32953_ex._Artibeus_planirostris_JQ071381:0.009105166183995568,Bartonella_sp._ex._Artibeus_jamaicensis_AJ37081:0.00566934763084224)82:0.007893235482450653,(Bartonella_sp._B29126_ex._Carollia_perspicillata_HM597199:0.025989971427933137,Bartonella_sp._B29230_ex._Phyllostomus_hastatus_HM597200:0.015629135440526916)78:0.010077913295376493)70:0.013450336454363917)84:0.050996647407881845,((Bartonella_sp._B32960_ex._Carollia_perspicillata_JQ071386:0.008992841074678643,(Bartonella_sp._B32943_ex._Carollia_perspicillata_JQ071384:2.73284178798397E-6,(Bartonella_sp._B32954_ex._Artibeus_planirostris_JQ071382:0.0062018140157772805,(Bartonella_sp._B32946_ex._Glossophaga_soricina_JQ071383:0.006004203755107892,Bartonella_sp._B29110_ex._Glossophaga_soricina_HM597202:0.002794071288767581)92:0.009210283198957768)61:0.0028114918070704068)60:2.73284178798397E-6)94:0.06339145884906368,((Bartonella_sp._ex._Nyctalus_noctula_AJ871615:0.03620646596386237,(Bartonella_sp._ex._Myotis_daubentoni_AJ871613:0.02114201997739435,Bartonella_sp._ex._Myotis_mystacinus_AJ871612:0.0023959496905545732)63:0.0041086161277068475)82:0.027071730567008734,(('Bartonella sp. T-837 ex. Triaenops persicus HM545138':0.11867608064740147,('Bartonella sp. H-556 ex. Hipposideros armiger HM545137':0.1334674779447255,(('Bartonella sp. E2-114 ex. Eidolon helvum HM363766':0.0995665537198961,'Bartonella sp. E1-105 ex. Eidolon helvum HM363765':0.059379466692418184)73:0.03761540699935513,('Bartonella sp. C-583 ex. Coleura afra HM545136':0.10942762776962502,('Bartonella sp. E3-106 ex. Eidolon helvum HM363767':0.05261060492413964,'Bartonella sp. R-191 ex. Rousettus aegyptiacus HM363764':0.06123449615457308)99:0.0628509259969013)74:0.05056814155053007)38:0.017377709129861044)30:0.011353105646475185)49:0.022504364928917536,(((Bartonella_sp._B29107_ex._Desmodus_rotundus_HM597190:0.004222244625714111,(Bartonella_sp._B29043_ex._Desmodus_rotundus_HM597188:0.002794508187434965,(Bartonella_sp._B29042_ex._Desmodus_rotundus_HM597187:2.73284178798397E-6,(Bartonella_sp._B29114_ex._Desmodus_rotundus_HM597192:0.0056115015355604255,(Bartonella_sp._B29044_ex._Desmodus_rotundus_HM597189:0.0028125518599273567,Bartonella_sp._B29108_ex._Desmodus_rotundus_HM597191:2.73284178798397E-6)56:0.0027944860442697815)25:2.73284178798397E-6)16:2.73284178798397E-6)55:0.0014134819735245308)100:0.10454973338965479,(Bartonella_sp._B29105_ex._Pteronotus_davyi_HM597203:0.19908440884127368,((Bartonella_sp._B29109_ex._Pteronotus_davyi_HM597194:0.006050751452686012,Bartonella_sp._B29102_ex._Pteronotus_davyi_HM597193:2.73284178798397E-6)100:0.13874998591378965,(Bartonella_sp._B32851_ex._Artibeus_obscurus_JQ071380:0.01413986259743799,(Bartonella_sp._B29112_ex._Phyllostomus_hastatus_HM597204:0.034072690330942665,(Bartonella_sp._B29172_ex._Micronycteris_microtis_HM597207:0.002903166761356092,Bartonella_sp._B32955_ex._Carollia_perspicillata_JQ071385:2.73284178798397E-6)99:0.03629948165392607)63:0.008967584073391413)97:0.0455365046761213)24:0.019816357209536607)59:0.01271602092010129)61:0.015794978136468994,('Bartonella sp. Ew-111 ex. Eidolon helvum HM363768':0.12411958613840518,((Bartonella_sp._No.16_ex._Miniopterus_schreibersii_JF500522:2.73284178798397E-6,Bartonella_sp._No.05_ex._Miniopterus_schreibersii_JF500511:0.0102888439204212)99:0.08732587271937708,((Bartonella_sp._B29122_ex._Desmodus_rotundus_HM597196:0.02336435795005398,Bartonella_sp._B29119_ex._Desmodus_rotundus_HM597195:0.001626421506768922)100:0.05084683258867047,(((Bartonella_sp._Mr37078_ex._Monophyllus_redmani:0.022685449277660353,Bartonella_sp._Mr37075_ex._Monophyllus_redmani:0.028050555350570577)85:0.037665413568038125,(Bartonella_sp._B29115_ex._Phyllostomus_hastatus_HM597201:0.059668222698316925,Bartonella_sp._Mr37077_ex._Monophyllus_redmani:0.07076478112284576)44:0.012948882183879169)65:0.01786942932709129,(Bartonella_sp._B32856_ex._Vampyressa_bidens_JQ071389:0.06243295410582963,((Bartonella_sp._B32947_ex._Phyllostomus_hastatus_JQ071387:0.0029129070857615426,Bartonella_sp._B29116_ex._Phyllostomus_hastatus_HM597198:2.73284178798397E-6)99:0.028983707497065234,(Bartonella_sp._B32855_ex._Desmodus_rotundus_JQ071378:0.014443825956921693,(Bartonella_sp._B32854_ex._Phyllostomus_hastatus_JQ071388:2.73284178798397E-6,Bartonella_sp._B29111_ex._Artibeus_toltecus_HM597197:0.02218440750218271)89:0.028286612351538752)43:0.00817853356893845)78:0.027575326668543464)83:0.039727597935429626)45:0.01270359278287875)59:0.03348918761345326)10:2.73284178798397E-6)6:0.006371771901857492)19:0.02153926534910934)65:0.028483982111496085)67:0.02412194297619831)29:2.73284178798397E-6)15:0.01667137612632404):0.3308821857297412);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr74476]


END;