#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 10, 2024; 7:02 GMT TreeBASE (cc) 1994-2008 Study reference: Alvarado P. 2014. Atractosporocybe, Leucocybe and Rhizocybe, three new clitocyboid genera in the Tricholomatoid clade (Agaricales) and notes on Clitocybe and Lepista. Mycologia, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S15672] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=91; TAXLABELS Clitocybe_amarescens_JF907818 Clitocybe_cerussata_KJ680971 Clitocybe_cerussata_KJ680972 Clitocybe_cerussata_KJ681000 Clitocybe_dealbata_KJ680973 Clitocybe_dealbata_KJ680974 Clitocybe_dryadicola_GU234064 Clitocybe_dryadicola_GU234101 Clitocybe_favrei_GU234009 Clitocybe_festiva_GU234015 Clitocybe_festiva_GU234021 Clitocybe_fragrans_JF907811 Clitocybe_hygrophana_KJ680975 Clitocybe_leucodiatreta_JF907819 Clitocybe_metachroa_JF907806 Clitocybe_metachroides_JF907820 Clitocybe_nebularis_AY521248 Clitocybe_nebularis_DQ149727 Clitocybe_nebularis_DQ486691 Clitocybe_nebularis_HQ436121 Clitocybe_odora_KJ680976 Clitocybe_paxillus_GU234065 Clitocybe_paxillus_GU234110 Clitocybe_phyllophyla_KJ680980 Clitocybe_phyllophyla_KJ680981 Clitocybe_rivulosa_KJ680977 Clitocybe_rivulosa_KJ680978 Clitocybe_rivulosa_KJ680979 Clitocybe_rivulosa_KJ680990 Clitocybe_sp_EU486440 Clitocybe_sp_FJ627022 Clitocybe_sp_JN020998 Clitocybe_sp_KC176349 Clitocybe_sp_KJ680982 Clitocybe_sp_KJ680983 Clitocybe_sp_KJ680984 Clitocybe_sp_KJ680985 Clitocybe_sp_KJ680986 Clitocybe_sp_KJ680987 Clitocybe_sp_KJ680988 Clitocybe_sp_KJ680989 Clitocybe_subditopoda_EU669216 Clitocybe_subditopoda_EU697244 Clitocybe_subditopoda_FJ755224 Clitocybe_tarda_var_alc_HQ179666 Clitocybe_vibecina_GU234041 Clitocybe_vibecina_GU234049 Clitocybe_vibecina_JF907821 Collybia_cirrhata_AF274380 Collybia_cirrhata_AF361314 Collybia_cookei_AF274383 Collybia_cookei_DQ830806 Collybia_tuberosa_AF274379 Collybia_tuberosa_AF361308 Lepista_caespitosa_KJ680997 Lepista_caespitosa_KJ680998 Lepista_caespitosa_KJ680999 Lepista_densifolia_KJ681001 Lepista_irina_DQ221109 Lepista_irina_FJ810142 Lepista_irina_HM237136 Lepista_irina_KJ681002 Lepista_irina_KJ681003 Lepista_irina_KJ681004 Lepista_irina_KJ681005 Lepista_irinoides_KJ681006 Lepista_nuda_AB285100 Lepista_nuda_FJ755225 Lepista_nuda_FJ810154 Lepista_nuda_FJ810156 Lepista_panaeolus_KJ681007 Lepista_panaeolus_KJ681008 Lepista_panaeolus_KJ681009 Lepista_panaeolus_KJ681010 Lepista_panaeolus_KJ681011 Lepista_paxilloides_KJ681012 Lepista_paxilloides_KJ681013 Lepista_personata_KJ681014 Lepista_personata_KJ681015 Lepista_piperata_KJ681016 Lepista_sordida_AY534114 Lepista_sordida_KJ681018 Lepista_sordida_KJ681019 Lepista_sordida_KJ681020 Lepista_sordida_UDB000595 Lepista_sp_KJ681017 Lepista_subconnexa_KJ681021 Lepista_subconnexa_KJ681022 Lepista_subconnexa_KJ681023 Uncultured_Basidiomycota_FJ820559 Uncultured_Basidiomycota_GU328606 ; END; BEGIN TREES; TITLE Clitocybe_ITS; LINK TAXA = Taxa; TREE con_50_majrule = [&R] (Clitocybe_subditopoda_EU697244:0.070475,((Clitocybe_nebularis_HQ436121:0.002147,Clitocybe_nebularis_DQ486691:0.002251,Clitocybe_nebularis_DQ149727:0.002249)0.57:0.004169,Clitocybe_nebularis_AY521248:0.009862)1.00:0.034149,(((Clitocybe_cerussata_KJ681000:0.002172,Lepista_densifolia_KJ681001:0.002338)0.97:0.008478,(Lepista_panaeolus_KJ681007:0.00219,Lepista_panaeolus_KJ681009:0.002254,Lepista_panaeolus_KJ681010:0.006653,Lepista_panaeolus_KJ681008:0.002222,Lepista_paxilloides_KJ681012:0.002181,Lepista_irina_HM237136:0.002191,Lepista_paxilloides_KJ681013:0.002266,Lepista_panaeolus_KJ681011:0.00218,Lepista_subconnexa_KJ681021:0.004426,Lepista_subconnexa_KJ681022:0.002216,Lepista_subconnexa_KJ681023:0.002252,Lepista_caespitosa_KJ680997:0.00216,Lepista_caespitosa_KJ680999:0.002208,Lepista_irina_DQ221109:0.002148,Lepista_caespitosa_KJ680998:0.002203,Lepista_irina_FJ810142:0.008946)1.00:0.023849)1.00:0.035736,((((Clitocybe_dealbata_KJ680973:0.002023,Clitocybe_dealbata_KJ680974:0.004098,Clitocybe_leucodiatreta_JF907819:0.014764,Clitocybe_rivulosa_KJ680978:0.002025)1.00:0.055058,(Clitocybe_paxillus_GU234065:0.006621,Clitocybe_paxillus_GU234110:0.006574)1.00:0.011816,((Clitocybe_sp_JN020998:0.02176,((((Clitocybe_amarescens_JF907818:0.002083,Clitocybe_metachroa_JF907806:0.002172,Clitocybe_metachroides_JF907820:0.004206)1.00:0.026794,((Clitocybe_sp_KJ680989:0.002297,Uncultured_Basidiomycota_FJ820559:0.004246)0.99:0.004322,Clitocybe_vibecina_JF907821:0.00226)0.62:0.004484)1.00:0.025449,Lepista_irina_KJ681003:0.002097,Lepista_irina_KJ681002:0.002102,Lepista_irina_KJ681004:0.002133,Lepista_irinoides_KJ681006:0.00214)0.74:0.008843,Lepista_irina_KJ681005:0.002331)0.78:0.009313)0.60:0.008693,((Collybia_cirrhata_AF361314:0.00422,Collybia_cirrhata_AF274380:0.002055)1.00:0.010674,((Collybia_tuberosa_AF361308:0.002878,Collybia_tuberosa_AF274379:0.005756)0.97:0.006186,(Collybia_cookei_DQ830806:0.012517,Collybia_cookei_AF274383:0.004223)1.00:0.019019)0.99:0.00805)1.00:0.010769)0.53:0.009135,(Clitocybe_sp_KJ680985:0.002122,Clitocybe_sp_KJ680986:0.00218,Clitocybe_sp_KJ680987:0.002292,Clitocybe_sp_KJ680988:0.002175,Clitocybe_hygrophana_KJ680975:0.004293,Clitocybe_odora_KJ680976:0.004172)0.95:0.007942,(Uncultured_Basidiomycota_GU328606:0.004431,Clitocybe_subditopoda_EU669216:0.002369)0.74:0.004833,(Clitocybe_dryadicola_GU234101:0.016564,Clitocybe_dryadicola_GU234064:0.002256)1.00:0.022359,((Clitocybe_phyllophyla_KJ680980:0.002194,Clitocybe_cerussata_KJ680971:0.006555,Clitocybe_phyllophyla_KJ680981:0.002116)0.74:0.004308,Clitocybe_cerussata_KJ680972:0.007051)1.00:0.016804,(Lepista_piperata_KJ681016:0.002178,Clitocybe_subditopoda_FJ755224:0.004185,Clitocybe_rivulosa_KJ680990:0.005981)1.00:0.019906,Clitocybe_fragrans_JF907811:0.007474,((Clitocybe_festiva_GU234015:0.011075,Clitocybe_festiva_GU234021:0.002067)0.99:0.005012,(Clitocybe_sp_KJ680982:0.007845,(Clitocybe_sp_KJ680983:0.002132,Clitocybe_rivulosa_KJ680977:0.002111,Clitocybe_rivulosa_KJ680979:0.002141)0.86:0.004868)0.82:0.007222)0.51:0.004353,Clitocybe_sp_KJ680984:0.004243)0.60:0.011498,((((Clitocybe_tarda_var_alc_HQ179666:0.004456,Lepista_sordida_AY534114:0.00218)0.73:0.004214,Lepista_sordida_UDB000595:0.003079)1.00:0.022235,(Lepista_nuda_FJ810154:0.006325,Lepista_nuda_FJ755225:0.002256)1.00:0.030191,((Lepista_personata_KJ681014:0.002055,Lepista_personata_KJ681015:0.002268)1.00:0.013282,(Lepista_sp_KJ681017:0.002225,Lepista_sordida_KJ681018:0.002166,Lepista_sordida_KJ681020:0.002141,Lepista_sordida_KJ681019:0.002117)0.98:0.011237)1.00:0.021136)0.64:0.007615,(Lepista_nuda_FJ810156:0.001903,Lepista_nuda_AB285100:0.002175)1.00:0.028923)1.00:0.023524,((Clitocybe_favrei_GU234009:0.004534,Clitocybe_vibecina_GU234049:0.005184)0.99:0.005178,Clitocybe_vibecina_GU234041:0.002281)1.00:0.017805)0.95:0.009605,(Clitocybe_sp_EU486440:0.002107,Clitocybe_sp_KC176349:0.008607,Clitocybe_sp_FJ627022:0.002151)1.00:0.034124)0.96:0.010734)1.00:0.032987); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr74479] END;