#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 10, 2024; 3:58 GMT TreeBASE (cc) 1994-2008 Study reference: Alvarado P. 2014. Atractosporocybe, Leucocybe and Rhizocybe, three new clitocyboid genera in the Tricholomatoid clade (Agaricales) and notes on Clitocybe and Lepista. Mycologia, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S15672] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=49; TAXLABELS Asterophora_parasitica_AF223191_EF420988_EF421054_AJ496 Callistosporium_graminicolor_AY745702_X_GU187761_AY752974 Callistosporium_luteoolivaceum_AF261405_DQ825406 Catathelasma_ventricosum_DQ089012_DQ470830_X_DQ435811 Clitocybe_adirondackensis_HQ728530_HQ728532_X_HQ728531 Clitocybe_candicans_AY645055_DQ385881_DQ408149 Clitocybe_candicans_KJ681051_KJ681068_X_KJ681080 Clitocybe_candicans_KJ681052_X_X_KJ681081_ Clitocybe_connata_KJ681049_KJ681079 Clitocybe_connata_KJ681050_X_X_KJ681078_ Clitocybe_dealbata_AF223175_DQ825407_EF421080_DQ825 Clitocybe_inornata_KJ681045_KJ681066_KJ681089 Clitocybe_inornata_KJ681046_KJ681067_KJ681090_KJ681 Clitocybe_inornata_KJ681047_X_KJ681091_KJ681076 Clitocybe_inornata_KJ681048_X_KJ681092_KJ681077 Clitocybe_nebularis_AF223217_EF421011_EF421081 Clitocybe_nebularis_DQ457658_DQ470833_X_DQ437681 Clitocybe_phyllophila_AY207157 Clitocybe_pruinosa_KJ681062_KJ681062_KJ681084_KJ681 Clitocybe_subditopoda_AY691889_AY780942_DQ408150_AY771 Clitocybe_subditopoda_EU852807 Clitocybe_vermicularis_KJ681039_KJ681063_KJ681085_KJ681 Clitocybe_vermicularis_KJ681040_X_KJ681086_KJ681073 Clitopilus_cystidiatus_HM623133_GQ289220 Clitopilus_fallax_AF223166_EF421018_EF421089 Clitopilus_prunulus_GU384615_GU384650_X_AY771607 'Clitopilus sp. VHAs07/02 EF421092 DQ825408 EF421086' Collybia_tuberosa_AY639884_AY787219_AY881025_NG013 Entoloma_abortivum_JQ320117_GU384642 Entoloma_prunuloides_AY700180_DQ385883_DQ457633_NG013 Entoloma_sinuatum_AY691891_GQ289264_X_AY657007 Infundibulicybe_gibba_DQ457682_DQ472727_GU187759_DQ115 Lepista_irina_DQ234538_DQ385885_DQ028591_AY059 Lyophyllum_caerulescens_AF223209_EF421000_EF421066 Lyophyllum_connatum_AF042590_EF420995_EF421061 Lyophyllum_semitale_AF042581_EF421002_EF421068 Lyophyllum_sykosporum_AF223208_EF421003_EF421069 Musumecia_bettlachensis_JF926521_KJ681060_KJ681082_KJ681 Musumecia_sp._KJ681037_KJ681061_KJ681083_KJ681 Pseudoclitocybe_cyathiformis_EF551313_GU187815_GU187742_GU187 Rhodocybe_mundula_AY700182_DQ474128_X_DQ089017 Singerocybe_hydrogramma_KJ681041_KJ681064_KJ681087_KJ681 Singerocybe_hydrogramma_KJ681042_KJ681065_KJ681088 Tephrocybe_gibberosa_AF223198_EF421005_EF421073 Tricholoma_myomyces_U76459_DQ367436_DQ367429 Tricholoma_palustre_AY700197_DQ484055_X_AY757267 Tricholoma_subaureum_U76466_EF421015_EF421085 Tricholoma_viridiolivaceum_JF706317_JF706319 Tricholomella_constricta_AF223188_DQ825412_EF421079 ; END; BEGIN TREES; TITLE 'Clitocybe 28S nLSU-rpb2-tef1-18S nSSU'; LINK TAXA = Taxa; TREE con_50_majrule = [&R] (Infundibulicybe_gibba_DQ457682_DQ472727_GU187759_DQ115:0.037782,((Pseudoclitocybe_cyathiformis_EF551313_GU187815_GU187742_GU187:0.034769,(Musumecia_bettlachensis_JF926521_KJ681060_KJ681082_KJ681:0.018314,Musumecia_sp._KJ681037_KJ681061_KJ681083_KJ681:0.002368)1.00:0.035921)1.00:0.0276,((((((((Clitocybe_pruinosa_KJ681062_KJ681062_KJ681084_KJ681:0.009625,Clitocybe_vermicularis_KJ681039_KJ681063_KJ681085_KJ681:0.01603)1.00:0.014852,(Clitocybe_vermicularis_KJ681040_X_KJ681086_KJ681073:0.003349,Catathelasma_ventricosum_DQ089012_DQ470830_X_DQ435811:0.001689,Callistosporium_graminicolor_AY745702_X_GU187761_AY752974:0.002104)1.00:0.025802)1.00:0.02853,(Callistosporium_luteoolivaceum_AF261405_DQ825406:0.027087,(Clitocybe_adirondackensis_HQ728530_HQ728532_X_HQ728531:0.010204,Singerocybe_hydrogramma_KJ681041_KJ681064_KJ681087_KJ681:0.006127)1.00:0.016023)1.00:0.010908)0.98:0.007832,(Singerocybe_hydrogramma_KJ681042_KJ681065_KJ681088:0.020555,(Clitopilus_fallax_AF223166_EF421018_EF421089:8.78E-4,Rhodocybe_mundula_AY700182_DQ474128_X_DQ089017:9.21E-4)1.00:0.01934)1.00:0.020042)0.93:0.006064,(('Clitopilus sp. VHAs07/02 EF421092 DQ825408 EF421086':0.011984,Clitopilus_prunulus_GU384615_GU384650_X_AY771607:0.022368)1.00:0.007481,Clitopilus_cystidiatus_HM623133_GQ289220:0.020316,((Entoloma_abortivum_JQ320117_GU384642:0.015837,Entoloma_prunuloides_AY700180_DQ385883_DQ457633_NG013:0.002757)0.99:0.006313,Entoloma_sinuatum_AY691891_GQ289264_X_AY657007:0.017605)1.00:0.015366)1.00:0.009657)0.91:0.00451,(Tricholomella_constricta_AF223188_DQ825412_EF421079:8.79E-4,Asterophora_parasitica_AF223191_EF420988_EF421054_AJ496:6.8E-4,Tephrocybe_gibberosa_AF223198_EF421005_EF421073:9.01E-4,Lyophyllum_sykosporum_AF223208_EF421003_EF421069:9.23E-4)1.00:0.010781,((Lyophyllum_caerulescens_AF223209_EF421000_EF421066:0.001902,Lyophyllum_semitale_AF042581_EF421002_EF421068:0.001673)1.00:0.010504,((Clitocybe_inornata_KJ681045_KJ681066_KJ681089:0.001125,Clitocybe_inornata_KJ681046_KJ681067_KJ681090_KJ681:0.00111,Clitocybe_inornata_KJ681047_X_KJ681091_KJ681076:0.002201)1.00:0.01842,((Clitocybe_inornata_KJ681048_X_KJ681092_KJ681077:6.91E-4,Clitocybe_subditopoda_AY691889_AY780942_DQ408150_AY771:7.54E-4)0.51:0.001461,Clitocybe_subditopoda_EU852807:0.001063)0.87:0.00315)1.00:0.008267)1.00:0.00782)1.00:0.01071,((Clitocybe_connata_KJ681050_X_X_KJ681078_:8.14E-4,Clitocybe_connata_KJ681049_KJ681079:0.002238)1.00:0.013918,((Lyophyllum_connatum_AF042590_EF420995_EF421061:0.010911,Clitocybe_candicans_AY645055_DQ385881_DQ408149:0.024983)0.97:0.007366,Clitocybe_candicans_KJ681051_KJ681068_X_KJ681080:0.00724)0.91:0.005323,(Clitocybe_candicans_KJ681052_X_X_KJ681081_:0.015796,((Tricholoma_palustre_AY700197_DQ484055_X_AY757267:8.63E-4,Tricholoma_viridiolivaceum_JF706317_JF706319:0.001529)1.00:0.006119,Tricholoma_myomyces_U76459_DQ367436_DQ367429:0.002905)1.00:0.035072)0.52:0.004239)0.99:0.005304)0.92:0.004751,((Tricholoma_subaureum_U76466_EF421015_EF421085:0.019405,Clitocybe_nebularis_DQ457658_DQ470833_X_DQ437681:0.009231)0.55:0.005552,Clitocybe_nebularis_AF223217_EF421011_EF421081:0.014761,Collybia_tuberosa_AY639884_AY787219_AY881025_NG013:0.02884)1.00:0.016375)0.75:0.005927)1.00:0.012762,(Clitocybe_dealbata_AF223175_DQ825407_EF421080_DQ825:0.007737,(Lepista_irina_DQ234538_DQ385885_DQ028591_AY059:0.011437,Clitocybe_phyllophila_AY207157:0.010776)1.00:0.026218)1.00:0.011758); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr74480] END;