#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 15, 2024; 20:55 GMT

TreeBASE (cc) 1994-2008

Study reference:
Davalos L.M., Velazco P.M., Warsi O., Smits P.D., & Simmons N. 2014. Integrating
Incomplete Fossils by Isolating Conflicting Signal in Saturated and Non-Independent
Morphological Characters. Systematic Biology, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S13970]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=113;
        TAXLABELS
            Anoura_caudifer
            Anoura_cultrata
            Anoura_geoffroyi
            Anoura_geoffroyi_peruana
            Anoura_latidens
            Artibeus_gnomus
            Artibeus_jamaicensis
            Artibeus_lituratus
            Artibeus_obscurus
            Brachyphylla_cavernarum
            Brachyphylla_nana
            Carollia_brevicauda
            Carollia_perspicillata
            Choeroniscus_godmani
            Choeroniscus_minor
            Choeroniscus_periosus
            Choeronycteris_mexicana
            Chrotopterus_auritus
            Desmodus_rotundus
            Diaemus_youngi
            Diphylla_ecaudata
            Enchisthenes_hartii
            Erophylla_bombifrons
            Erophylla_sezekorni
            Glossophaga_commissarisi
            Glossophaga_leachii
            Glossophaga_longirostris
            Glossophaga_morenoi
            Glossophaga_soricina
            Glyphonycteris_daviesi
            Glyphonycteris_sylvestris
            Hylonycteris_underwoodi
            Lampronycteris_brachyotis
            Leptonycteris_curasoae
            Leptonycteris_nivalis
            Leptonycteris_yerbabuenae
            Lichonycteris_obscura
            Lionycteris_spurrelli
            Lonchophylla_handleyi
            Lonchophylla_mordax
            Lonchophylla_robusta
            Lonchophylla_thomasi
            Lonchorhina_aurita
            Lonchorhina_inusitata
            Lonchorhina_orinocensis
            Lophostoma_brasiliense
            Lophostoma_brasiliense_minuta
            Lophostoma_carrikeri
            Lophostoma_evotis
            Lophostoma_kalkoae
            Lophostoma_occidentalis
            Lophostoma_schulzi
            Lophostoma_silvicolum
            Lophostoma_silvicolum_centralis
            Lophostoma_silvicolum_silvicolum
            Macrophyllum_macrophyllum
            Macrotus_californicus
            Macrotus_waterhousii
            Micronycteris_brosseti
            Micronycteris_hirsuta
            Micronycteris_homezi
            Micronycteris_matses
            Micronycteris_megalotis
            Micronycteris_microtis
            Micronycteris_microtis_mexicana
            Micronycteris_minuta
            Micronycteris_schmidtorum
            Mimon_bennettii
            Mimon_cozumelae
            Mimon_crenulatum
            Mimon_crenulatum_keenani
            Mimon_crenulatum_longifolium
            Monophyllus_plethodon
            Monophyllus_redmani
            Mormoops_blainvillei
            Musonycteris_harrisoni
            Neonycteris_pusilla
            Noctilio_albiventris
            Noctilio_leporinus
            Notonycteris_magdalenensis
            Notonycteris_sucharadeus
            Palynephyllum_antimaster_2
            Phylloderma_stenops
            Phylloderma_stenops_septentrionalis
            Phyllonycteris_aphylla
            Phyllonycteris_major
            Phyllonycteris_poeyi
            Phyllostomus_discolor
            Phyllostomus_discolor_verrucosus
            Phyllostomus_elongatus
            Phyllostomus_hastatus
            Phyllostomus_hastatus_panamensis
            Platalina_genovensium
            Platyrrhinus_helleri
            Pteronotus_davyi
            Pteronotus_parnellii
            Pygoderma_bilabiatum
            Rhinophylla_alethina
            Rhinophylla_fischerae
            Rhinophylla_pumilio
            Sturnira_lilium
            Thyroptera_tricolor
            Tonatia_saurophila
            Tonatia_saurophila_bakeri
            Tonatia_saurophila_saurophila
            Trachops_cirrhosus
            Trachops_cirrhosus_coffini
            Trinycteris_nicefori
            Uroderma_bilobatum
            Vampyrodes_caraccioli
            Vampyrodes_major
            Vampyrum_spectrum
            Xeronycteris_vieirai
            ;
END;

BEGIN TREES;
      TITLE Chiroptera_Both_molecular_and_morphological_data;
      LINK TAXA = Taxa;
      TREE Fig._5A_ML_combined = [&R] (Thyroptera_tricolor:0.21358462001332285,((Noctilio_albiventris:0.015411642047615628,Noctilio_leporinus:0.021161459842761753):0.2771812815320654,((Mormoops_blainvillei:0.1775470273691978,(Pteronotus_davyi:0.06882665599632617,Pteronotus_parnellii:0.08326449228362445):0.1119185284966279):0.021823600422091666,((Macrotus_californicus:0.055473170307057486,Macrotus_waterhousii:0.07176641146152936):0.1436229592465805,((Diphylla_ecaudata:0.2236486609086142,(Desmodus_rotundus:0.1153906108954332,Diaemus_youngi:0.0990847163129103):0.06354879900022002):0.07484721953752921,((Lampronycteris_brachyotis:0.14827717592842382,((Micronycteris_homezi:0.019432631741032012,(Micronycteris_minuta:0.0413947449601589,Micronycteris_schmidtorum:0.031060699443887698):0.003101739377563004):0.049474408516692034,((Micronycteris_brosseti:0.05318121772696344,Micronycteris_hirsuta:0.05046822237353778):0.010522192938014431,(Micronycteris_matses:0.013080669332786898,(Micronycteris_microtis:0.011858661560983072,(Micronycteris_megalotis:0.023838349043171104,Micronycteris_microtis_mexicana:0.02476776078635185):0.007800299671793668):0.0049568697408476645):0.01696673491988946):0.038659391886206165):0.05844912573356403):0.04041491344946469,(((Lonchorhina_orinocensis:0.05911830327827176,(Lonchorhina_aurita:0.08814731841648857,Lonchorhina_inusitata:0.06662275078187252):0.030540907598333694):0.05429171866723227,(((Mimon_bennettii:0.049619703538525704,Mimon_cozumelae:0.03831969163403246):0.08659719277431403,(Chrotopterus_auritus:0.09886106867669538,(Vampyrum_spectrum:0.061658609718536796,(Notonycteris_magdalenensis:0.021497659301183213,Notonycteris_sucharadeus:0.022085030263950593):0.03898038145738745):0.042751724794344935):0.03518842374015839):0.016876243018896998,((Macrophyllum_macrophyllum:0.1640153478973503,(Trachops_cirrhosus:0.031753396590988414,Trachops_cirrhosus_coffini:0.05218783918889226):0.1036669913285982):0.011471942730744715,((Tonatia_saurophila_bakeri:0.0271178316485551,(Tonatia_saurophila:0.04064538180439533,Tonatia_saurophila_saurophila:0.01810175088896473):0.02901926448738851):0.06173579594579008,(((Lophostoma_evotis:0.05845972587036875,Lophostoma_silvicolum:0.03831501297872363):0.008833666457164642,((Lophostoma_carrikeri:0.04627608253690689,(Lophostoma_kalkoae:0.10735585235284263,(Lophostoma_brasiliense:0.03659344172673505,Lophostoma_brasiliense_minuta:0.05282260948356602):0.007551610444500728):0.01541153909974539):0.00974447489236478,(Lophostoma_schulzi:0.04007533340602628,(Lophostoma_silvicolum_silvicolum:0.015967371492535548,(Lophostoma_occidentalis:0.019903268540288902,Lophostoma_silvicolum_centralis:0.01874746752308435):0.02082378069542364):0.030907658696191276):0.018008775695824906):0.0070901218277727215):0.06507541637356526,((Mimon_crenulatum:0.05946438876018649,(Mimon_crenulatum_keenani:0.041959345254027475,Mimon_crenulatum_longifolium:0.05084300872304082):0.0313452387310394):0.07830646862663972,((Phylloderma_stenops:0.060577812870270406,Phylloderma_stenops_septentrionalis:0.06653888421291439):0.07190051800189488,((Phyllostomus_discolor:0.06353688759312145,Phyllostomus_discolor_verrucosus:0.04949225102184803):0.047415729786603786,(Phyllostomus_elongatus:0.04158667567157099,(Phyllostomus_hastatus:0.02143519694103587,Phyllostomus_hastatus_panamensis:0.03537771208048519):0.016441986714985826):0.023251905530821376):0.024032771531751516):0.009979839332473548):0.030344643610166786):0.009061706365424428):0.020057280417861013):0.00895736182984561):0.015260223774955207):0.006615790791978056,((((Glyphonycteris_daviesi:0.09513039491191992,Glyphonycteris_sylvestris:0.09272844409410513):0.02434761767002891,(Neonycteris_pusilla:0.13286329540949976,Trinycteris_nicefori:0.09047948820681269):0.016271795995367853):0.04219317543605436,((Carollia_brevicauda:0.02149647592902648,Carollia_perspicillata:0.011301872154907142):0.10873116575572785,((Rhinophylla_pumilio:0.0640848900138741,(Rhinophylla_alethina:0.08939418130166166,Rhinophylla_fischerae:0.06216756894696317):0.02374866694508567):0.13054924060294332,(Sturnira_lilium:0.13425936353302725,((Uroderma_bilobatum:0.08073326214828863,(Platyrrhinus_helleri:0.04812687353103235,(Vampyrodes_caraccioli:0.018984379257241276,Vampyrodes_major:0.0192613458488069):0.039333427980136074):0.01410057929796157):0.022417832484233614,(Enchisthenes_hartii:0.07789279248702616,(Pygoderma_bilabiatum:0.09100223931653671,(Artibeus_gnomus:0.06650001174781563,(Artibeus_lituratus:0.015699320328479205,(Artibeus_jamaicensis:0.020920294714696995,Artibeus_obscurus:0.022585098975479497):0.0033452025357096535):0.018728342860297058):0.024445380747572538):0.014826730066236983):0.01751918123233074):0.034440522294235804):0.029319407536152475):0.017802576072197242):0.00658437277158807):0.01964951446376336,(((Xeronycteris_vieirai:0.128157552926302,(Palynephyllum_antimaster_2:0.11228034222661208,Platalina_genovensium:0.04977296550278078):0.020527019651675527):0.0771804313533736,(Lonchophylla_thomasi:0.08996419120122434,(Lonchophylla_mordax:0.06881905656904778,(Lionycteris_spurrelli:0.0808456315343315,(Lonchophylla_handleyi:0.03999682854329267,Lonchophylla_robusta:0.04686322417093953):0.032474731190927066):0.019464475502904803):0.009910869437457462):0.02715806169607596):0.05179563814048475,(((Anoura_caudifer:0.05407811495091621,(Anoura_cultrata:0.04567230882811792,(Anoura_geoffroyi:0.013518073305116418,(Anoura_geoffroyi_peruana:0.043652679026674884,Anoura_latidens:0.027437576447964983):0.03289102092200318):0.030256687207118594):0.011350032627343742):0.06609412205697705,(Hylonycteris_underwoodi:0.07817945597085915,(Lichonycteris_obscura:0.08440888600215664,(Musonycteris_harrisoni:0.01822378971169483,(Choeronycteris_mexicana:0.0144267976265548,(Choeroniscus_godmani:0.02111987786138729,(Choeroniscus_minor:0.015536656812617256,Choeroniscus_periosus:0.051015858261135895):0.009914443370507231):0.01574916721044448):0.003200292270821555):0.026167570205095025):0.020739719955359406):0.0963985103826202):0.024316277160610522,(((Brachyphylla_cavernarum:0.012233672724240384,Brachyphylla_nana:0.03181989396012927):0.088864536318206,((Erophylla_bombifrons:0.0071381531821155565,Erophylla_sezekorni:0.004127753414415301):0.04352570739587338,(Phyllonycteris_major:0.013961215215687474,(Phyllonycteris_aphylla:0.023930110129443585,Phyllonycteris_poeyi:0.02406853014192916):0.004104306340816413):0.03798398178326393):0.05304461123106221):0.02470483031095363,((Monophyllus_plethodon:0.038319662590721476,Monophyllus_redmani:0.032629772984076384):0.04499892361275639,((Leptonycteris_nivalis:0.0619091987878161,(Leptonycteris_curasoae:0.050621440191692214,Leptonycteris_yerbabuenae:0.12538076281036908):0.007966556746419969):0.04311850160619716,(Glossophaga_soricina:0.044929467734101024,(Glossophaga_morenoi:0.0481227964563726,(Glossophaga_longirostris:0.027768868892713513,(Glossophaga_commissarisi:0.0451168966940605,Glossophaga_leachii:0.020278116956457024):0.01488169400555641):0.01966351995726576):0.028281743102777337):0.05085984528668738):0.023296017841257417):0.01898304011706041):0.006091761842785605):0.025836166413841677):0.019708699185996062):0.02012538715918898):0.027662819564552747):0.007186556423416275):0.019598469772862812):0.07234508868774003):0.05136994383382144):0.21358462001332285);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr75071]


END;