#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 26, 2024; 15:58 GMT

TreeBASE (cc) 1994-2008

Study reference:
Leite T.D., Castro C.A., Pereira O.L., Araujo E.F., & Queiroz M.V. 2014. Enrichment
and characterization of basidiomycetous endophytes associated with soybeans and
coffee tissues. , .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S16171]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=52;
        TAXLABELS
            Bullera_sinensis_var._lactis
            Bulleromyces_albus
            Bulleromyces_albus_CBS500
            Bulleromyces_albus_CBS502
            Cryptococcus_cf._cellulolyticus
            Cryptococcus_cf._cellulolyticus_ATT064
            Cryptococcus_cf._cellulolyticus_CBS8294
            Cryptococcus_cf._taibaiensis_A_28
            'Cryptococcus cf. taibaiensis C1/25'
            Cryptococcus_cf._taibaiensis_IA_05
            Cryptococcus_cf._taibaiensis_ST7.9
            Cryptococcus_dimennae_1
            Cryptococcus_dimennae_2
            Cryptococcus_dimennae_CBS5770
            'Cryptococcus dimennae F0910-6F4'
            'Cryptococcus flavescens C2/08'
            Cryptococcus_flavescens_JCM9909
            'Cryptococcus flavescens NRRL Y-30216'
            Cryptococcus_sp._1
            Cryptococcus_sp._2
            Cryptococcus_sp._CBS8366
            Cryptococcus_sp._CBS8979
            'Cryptococcus sp. KTAPG1-11.63'
            Cryptococcus_sp._SA7L02
            Erythrobasidium_hasegawianum
            Erythrobasidium_hasegawianum_CBS11710
            Erythrobasidium_hasegawianum_CBS8253
            Fellomyces_mexicanus
            Fellomyces_mexicanus_CBS8313
            Hannaella_oryzae
            Hannaella_oryzae_CBS7194
            Kurtzmanomyces_nectairei_CBS6405
            Kurtzmanomyces_sp.
            Kurtzmanomyces_sp._CBS12709
            Occultifur_externus
            Occultifur_externus_CBS8732
            Occultifur_externus_PYCC4557
            Rhodotorula_ingeniosa
            Rhodotorula_ingeniosa_CBS4240
            Rhodotorula_marina
            Rhodotorula_marina_CBS2365
            Rhodotorula_mucilaginosa_AM_25
            Rhodotorula_mucilaginosa_CBS9077
            Rhodotorula_mucilaginosa_E228
            Rhodotorula_mucilaginosa_IA_32
            Rhodotorula_mucilaginosa_SAAR1
            Rhodotorula_slooffiae
            Rhodotorula_slooffiae_CBS5706
            Rhodotorula_slooffiae_R28Pi
            Sporidiobolus_pararoseus
            Sporidiobolus_pararoseus_CBS4216
            Sporidiobolus_pararoseus_CBS484
            ;
END;

BEGIN TREES;
      TITLE Yeast;
      LINK TAXA = Taxa;
      TREE Fig._7 = [&R] ((Kurtzmanomyces_nectairei_CBS6405:0.071101,(Kurtzmanomyces_sp.:0.03769,Kurtzmanomyces_sp._CBS12709:0.03894)1.00:0.052571)1.00:0.2373515,((((Rhodotorula_marina_CBS2365:0.006729,Rhodotorula_marina:0.004737)1.00:0.072331,(Erythrobasidium_hasegawianum:0.002195,(Erythrobasidium_hasegawianum_CBS8253:0.004178,Erythrobasidium_hasegawianum_CBS11710:0.002127)0.78:0.002218)1.00:0.069178)1.00:0.022252,((Occultifur_externus_PYCC4557:0.001564,(Occultifur_externus_CBS8732:0.003113,Occultifur_externus:0.001051)0.65:0.00378)1.00:0.028489,(Rhodotorula_slooffiae_CBS5706:0.008076,(Rhodotorula_slooffiae_R28Pi:0.003199,Rhodotorula_slooffiae:0.004862)0.95:0.006001)1.00:0.040748)0.99:0.018886)1.00:0.103711,(((Rhodotorula_ingeniosa_CBS4240:0.001013,Rhodotorula_ingeniosa:0.001143)1.00:0.139954,((Sporidiobolus_pararoseus_CBS4216:0.003533,(Sporidiobolus_pararoseus_CBS484:0.001044,Sporidiobolus_pararoseus:0.002006)0.64:0.002184)1.00:0.138662,(Rhodotorula_mucilaginosa_CBS9077:0.001091,Rhodotorula_mucilaginosa_SAAR1:0.00158,Rhodotorula_mucilaginosa_E228:0.001571,(Rhodotorula_mucilaginosa_IA_32:0.009155,Rhodotorula_mucilaginosa_AM_25:0.001096)0.88:0.002736)1.00:0.073243)1.00:0.076907)1.00:0.154609,(('Cryptococcus sp. KTAPG1-11.63':0.007486,Cryptococcus_sp._2:0.01607)1.00:0.26074,((Bullera_sinensis_var._lactis:0.075438,(Hannaella_oryzae_CBS7194:0.003722,Hannaella_oryzae:0.002976)1.00:0.05672)1.00:0.1004,((((Cryptococcus_dimennae_CBS5770:0.015224,'Cryptococcus dimennae F0910-6F4':0.007466)1.00:0.042159,(Cryptococcus_dimennae_2:0.022173,Cryptococcus_dimennae_1:0.014913)1.00:0.037175)1.00:0.047308,(Cryptococcus_cf._taibaiensis_ST7.9:0.032955,(Cryptococcus_sp._CBS8979:0.020551,('Cryptococcus cf. taibaiensis C1/25':0.009505,(Cryptococcus_sp._SA7L02:0.005746,(Cryptococcus_cf._taibaiensis_IA_05:0.001126,Cryptococcus_cf._taibaiensis_A_28:0.001149)0.98:0.003542)1.00:0.00722)1.00:0.025697)1.00:0.022075)1.00:0.1063)1.00:0.068014,((Bulleromyces_albus_CBS500:0.001051,Bulleromyces_albus_CBS502:0.00203,Bulleromyces_albus:0.001052)1.00:0.095854,((Fellomyces_mexicanus_CBS8313:0.029336,Fellomyces_mexicanus:0.015077)1.00:0.128689,((Cryptococcus_cf._cellulolyticus_CBS8294:0.013719,(Cryptococcus_cf._cellulolyticus_ATT064:0.001135,Cryptococcus_cf._cellulolyticus:0.00403)1.00:0.008921)1.00:0.048171,((Cryptococcus_sp._CBS8366:0.002165,Cryptococcus_sp._1:0.00883)1.00:0.014828,(Cryptococcus_flavescens_JCM9909:0.001882,'Cryptococcus flavescens NRRL Y-30216':0.001338,'Cryptococcus flavescens C2/08':0.001088):0.030618)1.00:0.032828)1.00:0.028111)1.00:0.041008)1.00:0.058773)1.00:0.028826)0.83:0.058944)1.00:0.275265)1.00:0.080627)1.00:0.2373515);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr76679]


END;