#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 18, 2024; 10:57 GMT TreeBASE (cc) 1994-2008 Study reference: Arneaud S.L., Trinh H.T., Schlatter E.A., Dang C.M., & Porter J.R. 2014. Taxonomic classification of two podophyllotoxin-producing endophytic fungi. Fungal Biology, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S16236] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=100; TAXLABELS Acephala_applanata_DQ013037 Acephala_applanata_DQ013038 Acephala_applanata_DQ013039 Acephala_applanata_DQ274569 Acephala_applanata_DQ274570 Acephala_applanata_DQ274571 Acephala_applanata_DQ274572 Acephala_applanata_DQ274573 Acephala_applanata_DQ274574 Acephala_applanata_DQ274575 Acephala_applanata_DQ274576 Acephala_applanata_DQ274577 Acephala_applanata_DQ274578 Phialocephala__podophyllae_PPE7EF1a Phialocephala_cf._fortinii_CSP08_DQ274538 Phialocephala_cf._fortinii_CSP08_DQ274539 Phialocephala_cf._fortinii_CSP08_DQ274540 Phialocephala_cf._fortinii_CSP08_DQ274541 Phialocephala_cf._fortinii_CSP08_DQ274542 Phialocephala_cf._fortinii_CSP08_DQ274543 Phialocephala_cf._fortinii_CSP08_DQ274544 Phialocephala_europaea_DQ013031 Phialocephala_europaea_DQ013032 Phialocephala_europaea_DQ013033 Phialocephala_europaea_DQ274522 Phialocephala_europaea_DQ274523 Phialocephala_europaea_DQ274524 Phialocephala_europaea_DQ274525 Phialocephala_europaea_DQ274526 Phialocephala_europaea_DQ274527 Phialocephala_europaea_DQ274528 Phialocephala_europaea_DQ274529 Phialocephala_europaea_DQ274530 Phialocephala_fortinii_DQ274558 Phialocephala_fortinii_DQ274559 Phialocephala_fortinii_DQ274560 Phialocephala_fortinii_DQ274561 Phialocephala_fortinii_DQ274562 Phialocephala_fortinii_DQ274563 Phialocephala_fortinii_DQ274564 Phialocephala_fortinii_DQ274565 Phialocephala_fortinii_DQ274566 Phialocephala_fortinii_DQ274567 Phialocephala_fortinii_DQ274568 Phialocephala_fortinii_DQ335464 Phialocephala_fortinii_DQ991089 Phialocephala_fortinii_DQ991090 Phialocephala_fortinii_DQ991091 Phialocephala_fortinii_DQ991092 Phialocephala_fortinii_DQ991093 Phialocephala_fortinii_PPE5EF1a Phialocephala_helvetica_DQ013034 Phialocephala_helvetica_DQ013035 Phialocephala_helvetica_DQ013036 Phialocephala_helvetica_DQ274531 Phialocephala_helvetica_DQ274532 Phialocephala_helvetica_DQ274533 Phialocephala_helvetica_DQ274534 Phialocephala_helvetica_DQ274535 Phialocephala_helvetica_DQ274536 Phialocephala_helvetica_DQ274537 Phialocephala_letzii_DQ274511 Phialocephala_letzii_DQ274512 Phialocephala_letzii_DQ274513 Phialocephala_letzii_DQ274514 Phialocephala_letzii_DQ274515 Phialocephala_letzii_DQ274516 Phialocephala_letzii_DQ274517 Phialocephala_letzii_DQ274518 Phialocephala_letzii_DQ274519 Phialocephala_letzii_DQ274520 Phialocephala_letzii_DQ274521 Phialocephala_subalpina_DQ274545 Phialocephala_subalpina_DQ274546 Phialocephala_subalpina_DQ274547 Phialocephala_subalpina_DQ274548 Phialocephala_subalpina_DQ274549 Phialocephala_subalpina_DQ274550 Phialocephala_subalpina_DQ274551 Phialocephala_subalpina_DQ274552 Phialocephala_subalpina_DQ274553 Phialocephala_subalpina_DQ274554 Phialocephala_subalpina_DQ274555 Phialocephala_subalpina_DQ274556 Phialocephala_subalpina_DQ274557 Phialocephala_subalpina_DQ991085 Phialocephala_subalpina_DQ991086 Phialocephala_subalpina_DQ991087 Phialocephala_subalpina_DQ991088 Phialocephala_turiciensis_DQ013028 Phialocephala_turiciensis_DQ013029 Phialocephala_turiciensis_DQ013030 Phialocephala_turiciensis_DQ274504 Phialocephala_turiciensis_DQ274505 Phialocephala_turiciensis_DQ274506 Phialocephala_turiciensis_DQ274507 Phialocephala_turiciensis_DQ274508 Phialocephala_turiciensis_DQ274509 Phialocephala_turiciensis_DQ274510 Sclerotinia_sclerotiorum_AAGT01000228 ; END; BEGIN TREES; TITLE Endophytic_fungi_PPEEF1aMEGAMLBS_consensus_noexonadjustment; LINK TAXA = Taxa; TREE 'PPE5&7 EF1-alpha tree' = [&R] (Sclerotinia_sclerotiorum_AAGT01000228:1.0,(Phialocephala__podophyllae_PPE7EF1a:1.0,((Acephala_applanata_DQ274571:1.0,Acephala_applanata_DQ274572:1.0):1.0,((((Acephala_applanata_DQ013037:1.0,Acephala_applanata_DQ274573:1.0):1.0,(Acephala_applanata_DQ274575:1.0,Acephala_applanata_DQ274577:1.0):1.0):1.0,((Acephala_applanata_DQ274576:1.0,(Acephala_applanata_DQ013039:1.0,Acephala_applanata_DQ274569:1.0):1.0):1.0,((Acephala_applanata_DQ013038:1.0,Acephala_applanata_DQ274578:1.0):1.0,(Acephala_applanata_DQ274570:1.0,Acephala_applanata_DQ274574:1.0):1.0):1.0):1.0):1.0,(Phialocephala_fortinii_DQ274562:1.0,((((Phialocephala_letzii_DQ274511:1.0,Phialocephala_letzii_DQ274514:1.0):1.0,(Phialocephala_letzii_DQ274515:1.0,Phialocephala_letzii_DQ274516:1.0):1.0):1.0,((Phialocephala_letzii_DQ274518:1.0,(Phialocephala_letzii_DQ274513:1.0,Phialocephala_letzii_DQ274517:1.0):1.0):1.0,((Phialocephala_letzii_DQ274512:1.0,Phialocephala_letzii_DQ274519:1.0):1.0,(Phialocephala_letzii_DQ274520:1.0,Phialocephala_letzii_DQ274521:1.0):1.0):1.0):1.0):1.0,((Phialocephala_fortinii_PPE5EF1a:1.0,(Phialocephala_cf._fortinii_CSP08_DQ274542:1.0,Phialocephala_cf._fortinii_CSP08_DQ274543:1.0):1.0):1.0,((((Phialocephala_europaea_DQ274524:1.0,Phialocephala_europaea_DQ274529:1.0):1.0,(Phialocephala_europaea_DQ274525:1.0,Phialocephala_europaea_DQ274527:1.0):1.0):1.0,(((Phialocephala_europaea_DQ013031:1.0,Phialocephala_europaea_DQ274526:1.0):1.0,(Phialocephala_europaea_DQ274522:1.0,Phialocephala_europaea_DQ274528:1.0):1.0):1.0,((Phialocephala_europaea_DQ013032:1.0,Phialocephala_europaea_DQ274523:1.0):1.0,(Phialocephala_europaea_DQ013033:1.0,Phialocephala_europaea_DQ274530:1.0):1.0):1.0):1.0):1.0,(((Phialocephala_fortinii_DQ274566:1.0,Phialocephala_subalpina_DQ991086:1.0):1.0,((Phialocephala_helvetica_DQ274532:1.0,Phialocephala_helvetica_DQ274537:1.0):1.0,(((Phialocephala_helvetica_DQ013034:1.0,Phialocephala_helvetica_DQ274535:1.0):1.0,(Phialocephala_helvetica_DQ274531:1.0,Phialocephala_helvetica_DQ274533:1.0):1.0):1.0,((Phialocephala_helvetica_DQ013035:1.0,Phialocephala_helvetica_DQ274534:1.0):1.0,(Phialocephala_helvetica_DQ013036:1.0,Phialocephala_helvetica_DQ274536:1.0):1.0):1.0):1.0):1.0):1.0,((((Phialocephala_turiciensis_DQ013028:1.0,Phialocephala_turiciensis_DQ013030:1.0):1.0,(Phialocephala_turiciensis_DQ274506:1.0,Phialocephala_turiciensis_DQ274508:1.0):1.0):1.0,((Phialocephala_turiciensis_DQ274504:1.0,Phialocephala_cf._fortinii_CSP08_DQ274541:1.0):1.0,(((Phialocephala_turiciensis_DQ013029:1.0,Phialocephala_turiciensis_DQ274509:1.0):1.0,(Phialocephala_turiciensis_DQ274510:1.0,Phialocephala_cf._fortinii_CSP08_DQ274539:1.0):1.0):1.0,((Phialocephala_turiciensis_DQ274505:1.0,Phialocephala_cf._fortinii_CSP08_DQ274544:1.0):1.0,(Phialocephala_turiciensis_DQ274507:1.0,Phialocephala_cf._fortinii_CSP08_DQ274538:1.0):1.0):1.0):1.0):1.0):1.0,((((Phialocephala_subalpina_DQ274547:1.0,Phialocephala_subalpina_DQ274550:1.0):1.0,(Phialocephala_subalpina_DQ274553:1.0,Phialocephala_subalpina_DQ991087:1.0):1.0):1.0,(((Phialocephala_subalpina_DQ274545:1.0,Phialocephala_subalpina_DQ274556:1.0):1.0,(Phialocephala_subalpina_DQ274549:1.0,Phialocephala_subalpina_DQ991088:1.0):1.0):1.0,((Phialocephala_subalpina_DQ274546:1.0,Phialocephala_subalpina_DQ274548:1.0):1.0,(Phialocephala_subalpina_DQ274552:1.0,Phialocephala_subalpina_DQ991085:1.0):1.0):1.0):1.0):1.0,(((Phialocephala_subalpina_DQ274551:1.0,(Phialocephala_subalpina_DQ274554:1.0,Phialocephala_subalpina_DQ274555:1.0):1.0):1.0,((Phialocephala_cf._fortinii_CSP08_DQ274540:1.0,Phialocephala_fortinii_DQ991092:1.0):1.0,(Phialocephala_subalpina_DQ274557:1.0,Phialocephala_fortinii_DQ991090:1.0):1.0):1.0):1.0,((Phialocephala_fortinii_DQ274567:1.0,Phialocephala_fortinii_DQ991089:1.0):1.0,(((Phialocephala_fortinii_DQ274564:1.0,Phialocephala_fortinii_DQ991091:1.0):1.0,(Phialocephala_fortinii_DQ335464:1.0,Phialocephala_fortinii_DQ991093:1.0):1.0):1.0,((Phialocephala_fortinii_DQ274568:1.0,(Phialocephala_fortinii_DQ274558:1.0,Phialocephala_fortinii_DQ274563:1.0):1.0):1.0,((Phialocephala_fortinii_DQ274559:1.0,Phialocephala_fortinii_DQ274560:1.0):1.0,(Phialocephala_fortinii_DQ274561:1.0,Phialocephala_fortinii_DQ274565:1.0):1.0):1.0):1.0):1.0):1.0):1.0):1.0):1.0):1.0):1.0):1.0):1.0):1.0):1.0):1.0):1.0); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr77141] END;