#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 18, 2024; 13:10 GMT TreeBASE (cc) 1994-2008 Study reference: Arneaud S.L., Trinh H.T., Schlatter E.A., Dang C.M., & Porter J.R. 2014. Taxonomic classification of two podophyllotoxin-producing endophytic fungi. Fungal Biology, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S16236] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=121; TAXLABELS Acephala_applanata_DQ013127 Acephala_applanata_DQ013128 Acephala_applanata_DQ013129 Acephala_applanata_DQ274760 Acephala_applanata_DQ274761 Acephala_applanata_DQ274762 Acephala_applanata_DQ274763 Acephala_applanata_DQ274764 Acephala_applanata_DQ274765 Acephala_applanata_DQ274766 Acephala_applanata_DQ274767 Acephala_applanata_DQ274768 Acephala_applanata_DQ274769 Phialocephala_cf._fortinii_DQ274729 Phialocephala_cf._fortinii_DQ274730 Phialocephala_cf._fortinii_DQ274731 Phialocephala_cf._fortinii_DQ274732 Phialocephala_cf._fortinii_DQ274733 Phialocephala_cf._fortinii_DQ274734 Phialocephala_cf._fortinii_DQ274735 Phialocephala_cf._fortinii_EF485191 Phialocephala_cf._fortinii_EF485201 Phialocephala_cf._fortinii_EF485208 Phialocephala_cf._fortinii_EF485229 Phialocephala_europaea_DQ013121 Phialocephala_europaea_DQ013122 Phialocephala_europaea_DQ013123 Phialocephala_europaea_DQ274713 Phialocephala_europaea_DQ274714 Phialocephala_europaea_DQ274715 Phialocephala_europaea_DQ274716 Phialocephala_europaea_DQ274717 Phialocephala_europaea_DQ274718 Phialocephala_europaea_DQ274719 Phialocephala_europaea_DQ274720 Phialocephala_europaea_DQ274721 Phialocephala_fortinii_DQ274749 Phialocephala_fortinii_DQ274750 Phialocephala_fortinii_DQ274751 Phialocephala_fortinii_DQ274752 Phialocephala_fortinii_DQ274753 Phialocephala_fortinii_DQ274754 Phialocephala_fortinii_DQ274755 Phialocephala_fortinii_DQ274756 Phialocephala_fortinii_DQ274757 Phialocephala_fortinii_DQ274758 Phialocephala_fortinii_DQ274759 Phialocephala_fortinii_DQ335463 Phialocephala_fortinii_DQ417831 Phialocephala_fortinii_DQ417832 Phialocephala_fortinii_DQ417833 Phialocephala_fortinii_DQ417834 Phialocephala_fortinii_DQ417835 Phialocephala_fortinii_EF485190 Phialocephala_fortinii_EF485192 Phialocephala_fortinii_EF485223 Phialocephala_fortinii_EF485224 Phialocephala_fortinii_EF485225 Phialocephala_fortinii_EF485226 Phialocephala_fortinii_EF485227 Phialocephala_fortinii_EF485228 Phialocephala_fortinii_PPE5pPF076 Phialocephala_helvetica_DQ013124 Phialocephala_helvetica_DQ013125 Phialocephala_helvetica_DQ013126 Phialocephala_helvetica_DQ274722 Phialocephala_helvetica_DQ274723 Phialocephala_helvetica_DQ274724 Phialocephala_helvetica_DQ274725 Phialocephala_helvetica_DQ274726 Phialocephala_helvetica_DQ274727 Phialocephala_helvetica_DQ274728 Phialocephala_helvetica_EF485216 Phialocephala_helvetica_EF485217 Phialocephala_letzii_DQ274702 Phialocephala_letzii_DQ274703 Phialocephala_letzii_DQ274704 Phialocephala_letzii_DQ274705 Phialocephala_letzii_DQ274706 Phialocephala_letzii_DQ274707 Phialocephala_letzii_DQ274708 Phialocephala_letzii_DQ274709 Phialocephala_letzii_DQ274710 Phialocephala_letzii_DQ274711 Phialocephala_letzii_DQ274712 Phialocephala_letzii_EF485215 Phialocephala_podophyllae_PPE7pPF076 Phialocephala_subalpina_DQ274736 Phialocephala_subalpina_DQ274737 Phialocephala_subalpina_DQ274738 Phialocephala_subalpina_DQ274739 Phialocephala_subalpina_DQ274740 Phialocephala_subalpina_DQ274741 Phialocephala_subalpina_DQ274742 Phialocephala_subalpina_DQ274743 Phialocephala_subalpina_DQ274744 Phialocephala_subalpina_DQ274745 Phialocephala_subalpina_DQ274746 Phialocephala_subalpina_DQ274747 Phialocephala_subalpina_DQ274748 Phialocephala_subalpina_DQ417829 Phialocephala_subalpina_DQ417830 Phialocephala_subalpina_DQ991083 Phialocephala_subalpina_DQ991084 Phialocephala_subalpina_EF485218 Phialocephala_subalpina_EF485219 Phialocephala_subalpina_EF485220 Phialocephala_subalpina_EF485221 Phialocephala_subalpina_EF485222 Phialocephala_turiciensis_DQ013118 Phialocephala_turiciensis_DQ013119 Phialocephala_turiciensis_DQ013120 Phialocephala_turiciensis_DQ274695 Phialocephala_turiciensis_DQ274696 Phialocephala_turiciensis_DQ274697 Phialocephala_turiciensis_DQ274698 Phialocephala_turiciensis_DQ274699 Phialocephala_turiciensis_DQ274700 Phialocephala_turiciensis_DQ274701 Phialocephala_turiciensis_EF485193 Phialocephala_turiciensis_EF485194 ; END; BEGIN TREES; TITLE Endophytic_fungi_PPEpPF076MLBS1000MEGA_consensus; LINK TAXA = Taxa; TREE 'PPE5&7 pPF-076 tree' = [&R] (((((((Phialocephala_podophyllae_PPE7pPF076:1.0,Phialocephala_fortinii_EF485228:1.0):1.0,(Phialocephala_fortinii_DQ417831:1.0,Phialocephala_fortinii_EF485224:1.0):1.0):1.0,((Phialocephala_cf._fortinii_EF485191:1.0,Phialocephala_cf._fortinii_EF485208:1.0):1.0,((((Phialocephala_helvetica_DQ013124:1.0,Phialocephala_helvetica_DQ274726:1.0):1.0,Phialocephala_helvetica_DQ274724:1.0):1.0,Phialocephala_helvetica_DQ274723:1.0):1.0,(((Phialocephala_helvetica_DQ013126:1.0,Phialocephala_helvetica_DQ274728:1.0):1.0,(Phialocephala_helvetica_DQ274722:1.0,Phialocephala_helvetica_EF485217:1.0):1.0):1.0,((Phialocephala_helvetica_DQ013125:1.0,Phialocephala_helvetica_DQ274725:1.0):1.0,(Phialocephala_helvetica_DQ274727:1.0,Phialocephala_helvetica_EF485216:1.0):1.0):1.0):1.0):1.0):1.0):1.0,(((Phialocephala_fortinii_DQ274749:1.0,Phialocephala_fortinii_DQ417834:1.0):1.0,(Phialocephala_fortinii_DQ335463:1.0,Phialocephala_fortinii_DQ417835:1.0):1.0):1.0,(((Phialocephala_fortinii_DQ274751:1.0,Phialocephala_fortinii_DQ274754:1.0):1.0,(Phialocephala_fortinii_DQ274753:1.0,Phialocephala_fortinii_DQ417832:1.0):1.0):1.0,(((Phialocephala_fortinii_DQ274752:1.0,Phialocephala_fortinii_DQ274756:1.0):1.0,(Phialocephala_fortinii_DQ274758:1.0,Phialocephala_fortinii_EF485225:1.0):1.0):1.0,(((Phialocephala_subalpina_DQ274745:1.0,Phialocephala_fortinii_DQ274750:1.0):1.0,(Phialocephala_fortinii_DQ274755:1.0,Phialocephala_fortinii_EF485227:1.0):1.0):1.0,((Phialocephala_fortinii_DQ274757:1.0,Phialocephala_fortinii_EF485223:1.0):1.0,(Phialocephala_fortinii_DQ417833:1.0,Phialocephala_fortinii_EF485226:1.0):1.0):1.0):1.0):1.0):1.0):1.0):1.0,((Phialocephala_subalpina_EF485219:1.0,Phialocephala_subalpina_EF485221:1.0):1.0,((Phialocephala_subalpina_DQ274738:1.0,Phialocephala_subalpina_DQ417829:1.0):1.0,(((Phialocephala_subalpina_DQ274737:1.0,Phialocephala_subalpina_DQ991084:1.0):1.0,(Phialocephala_subalpina_DQ274747:1.0,Phialocephala_subalpina_EF485218:1.0):1.0):1.0,(((Phialocephala_subalpina_DQ274741:1.0,Phialocephala_subalpina_DQ274746:1.0):1.0,(Phialocephala_subalpina_DQ274744:1.0,Phialocephala_fortinii_DQ274759:1.0):1.0):1.0,((Phialocephala_subalpina_DQ274736:1.0,Phialocephala_subalpina_DQ274739:1.0):1.0,((Phialocephala_subalpina_DQ274743:1.0,Phialocephala_subalpina_DQ417830:1.0):1.0,(Phialocephala_fortinii_EF485190:1.0,(Phialocephala_subalpina_DQ991083:1.0,Phialocephala_cf._fortinii_EF485229:1.0):1.0):1.0):1.0):1.0):1.0):1.0):1.0):1.0):1.0,((((Phialocephala_subalpina_DQ274742:1.0,Phialocephala_subalpina_EF485222:1.0):1.0,Phialocephala_fortinii_EF485192:1.0):1.0,(Phialocephala_subalpina_DQ274748:1.0,(Phialocephala_subalpina_DQ274740:1.0,Phialocephala_subalpina_EF485220:1.0):1.0):1.0):1.0,(((Acephala_applanata_DQ274763:1.0,Acephala_applanata_DQ274765:1.0):1.0,Acephala_applanata_DQ274764:1.0):1.0,(((Acephala_applanata_DQ274760:1.0,Acephala_applanata_DQ274761:1.0):1.0,(Acephala_applanata_DQ274769:1.0,Acephala_applanata_DQ013127:1.0):1.0):1.0,((Acephala_applanata_DQ274762:1.0,Acephala_applanata_DQ274767:1.0):1.0,((Acephala_applanata_DQ274766:1.0,Acephala_applanata_DQ013129:1.0):1.0,(Acephala_applanata_DQ274768:1.0,Acephala_applanata_DQ013128:1.0):1.0):1.0):1.0):1.0):1.0):1.0):1.0,(((((((((((Phialocephala_europaea_DQ013121:1.0,Phialocephala_europaea_DQ013123:1.0):1.0,(Phialocephala_europaea_DQ274720:1.0,Phialocephala_letzii_DQ274706:1.0):1.0):1.0,(Phialocephala_europaea_DQ274714:1.0,Phialocephala_letzii_DQ274709:1.0):1.0):1.0,(Phialocephala_europaea_DQ274713:1.0,Phialocephala_letzii_DQ274702:1.0):1.0):1.0,((Phialocephala_europaea_DQ274717:1.0,Phialocephala_letzii_DQ274705:1.0):1.0,(Phialocephala_letzii_DQ274711:1.0,Phialocephala_turiciensis_DQ274698:1.0):1.0):1.0):1.0,(Phialocephala_letzii_DQ274708:1.0,Phialocephala_turiciensis_DQ274697:1.0):1.0):1.0,((Phialocephala_letzii_DQ274710:1.0,Phialocephala_letzii_DQ274712:1.0):1.0,(Phialocephala_letzii_DQ274707:1.0,Phialocephala_turiciensis_DQ274695:1.0):1.0):1.0):1.0,(Phialocephala_letzii_DQ274703:1.0,(Phialocephala_letzii_EF485215:1.0,Phialocephala_turiciensis_EF485193:1.0):1.0):1.0):1.0,((Phialocephala_europaea_DQ274719:1.0,Phialocephala_europaea_DQ274718:1.0):1.0,((Phialocephala_europaea_DQ274716:1.0,Phialocephala_europaea_DQ274715:1.0):1.0,(Phialocephala_europaea_DQ013122:1.0,Phialocephala_letzii_DQ274704:1.0):1.0):1.0):1.0):1.0,((Phialocephala_cf._fortinii_EF485201:1.0,Phialocephala_europaea_DQ274721:1.0):1.0,((Phialocephala_turiciensis_DQ274696:1.0,Phialocephala_turiciensis_DQ013120:1.0):1.0,((Phialocephala_turiciensis_DQ274701:1.0,Phialocephala_turiciensis_DQ274700:1.0):1.0,((Phialocephala_turiciensis_EF485194:1.0,Phialocephala_turiciensis_DQ274699:1.0):1.0,(Phialocephala_turiciensis_DQ013118:1.0,Phialocephala_turiciensis_DQ013119:1.0):1.0):1.0):1.0):1.0):1.0):1.0,(((((Phialocephala_cf._fortinii_DQ274731:1.0,Phialocephala_cf._fortinii_DQ274732:1.0):1.0,Phialocephala_cf._fortinii_DQ274730:1.0):1.0,(Phialocephala_cf._fortinii_DQ274734:1.0,Phialocephala_cf._fortinii_DQ274729:1.0):1.0):1.0,(Phialocephala_cf._fortinii_DQ274735:1.0,Phialocephala_cf._fortinii_DQ274733:1.0):1.0):1.0,Phialocephala_fortinii_PPE5pPF076:1.0):1.0):1.0); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr77143] END;