#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 30, 2024; 22:57 GMT

TreeBASE (cc) 1994-2008

Study reference:
Huvet M., & Stumpf M.P. 2014. Overlapping genes: a window on gene evolvability. BMC
genomics, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S16248]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=684;
        TAXLABELS
            'Acaryochloris marina MBIC11017 NC_009925'
            'Acholeplasma laidlawii PG-8A NC_010163'
            'Acidiphilium cryptum JF-5 NC_009484'
            'Acidothermus cellulolyticus 11B NC_008578'
            'Acidovorax citrulli AAC00-1 NC_008752'
            'Acidovorax sp. JS42 NC_008782'
            'Acinetobacter baumannii ACICU NC_010611'
            'Acinetobacter baumannii ATCC 17978 NC_009085'
            'Acinetobacter baumannii SDF NC_010400'
            'Acinetobacter sp. ADP1 NC_005966'
            'Actinobacillus pleuropneumoniae serovar 3 str. JL03 NC_010278'
            'Actinobacillus pleuropneumoniae serovar 5b str. L20 NC_009053'
            'Actinobacillus pleuropneumoniae serovar 7 str. AP76 NC_010939'
            'Actinobacillus succinogenes 130Z NC_009655'
            'Aeromonas hydrophila subsp. hydrophila ATCC 7966 NC_008570'
            'Aeromonas salmonicida subsp. salmonicida A449 NC_009348'
            'Aeropyrum pernix K1 NC_000854'
            'Agrobacterium fabrum str. C58 NC_003062'
            'Alcanivorax borkumensis SK2 NC_008260'
            'Alkalilimnicola ehrlichii MLHE-1 NC_008340'
            'Alkaliphilus metalliredigens QYMF NC_009633'
            'Alkaliphilus oremlandii OhILAs NC_009922'
            'Anabaena variabilis ATCC 29413 NC_007413'
            'Anaeromyxobacter dehalogenans 2CP-C NC_007760'
            'Anaeromyxobacter sp. Fw109-5 NC_009675'
            'Anaplasma marginale str. St. Maries NC_004842'
            'Anaplasma phagocytophilum str. HZ NC_007797'
            'Aquifex aeolicus VF5 NC_000918'
            'Archaeoglobus fulgidus DSM 4304 NC_000917'
            'Arcobacter butzleri RM4018 NC_009850'
            'Aromatoleum aromaticum EbN1 NC_006513'
            'Arthrobacter aurescens TC1 NC_008711'
            'Arthrobacter sp. FB24 NC_008541'
            'Aster yellows witches-broom phytoplasma AYWB NC_007716'
            'Azoarcus sp. BH72 NC_008702'
            'Azorhizobium caulinodans ORS 571 NC_009937'
            'Bacillus amyloliquefaciens subsp. plantarum str. FZB42 NC_009725'
            'Bacillus anthracis str. Ames Ancestor NC_007530'
            'Bacillus anthracis str. Ames NC_003997'
            'Bacillus anthracis str. Sterne NC_005945'
            'Bacillus cereus ATCC 10987 NC_003909'
            'Bacillus cereus ATCC 14579 NC_004722'
            'Bacillus cereus E33L NC_006274'
            'Bacillus clausii KSM-K16 NC_006582'
            'Bacillus cytotoxicus NVH 391-98 NC_009674'
            'Bacillus halodurans C-125 NC_002570'
            'Bacillus licheniformis DSM 13 = ATCC 14580 NC_006270'
            'Bacillus licheniformis DSM 13 = ATCC 14580 NC_006322'
            'Bacillus pumilus SAFR-032 NC_009848'
            'Bacillus subtilis subsp. subtilis str. 168 NC_000964'
            'Bacillus thuringiensis serovar konkukian str. 97-27 NC_005957'
            'Bacillus thuringiensis str. Al Hakam NC_008600'
            'Bacillus weihenstephanensis KBAB4 NC_010184'
            'Bacteroides fragilis NCTC 9343 NC_003228'
            'Bacteroides fragilis YCH46 NC_006347'
            'Bacteroides thetaiotaomicron VPI-5482 NC_004663'
            'Bacteroides vulgatus ATCC 8482 NC_009614'
            'Bartonella bacilliformis KC583 NC_008783'
            'Bartonella henselae str. Houston-1 NC_005956'
            'Bartonella quintana str. Toulouse NC_005955'
            'Bartonella tribocorum CIP 105476 NC_010161'
            'Baumannia cicadellinicola str. Hc (Homalodisca coagulata) NC_007984'
            'Bdellovibrio bacteriovorus HD100 NC_005363'
            'Beijerinckia indica subsp. indica ATCC 9039 NC_010581'
            'Bifidobacterium adolescentis ATCC 15703 NC_008618'
            'Bifidobacterium longum DJO10A NC_010816'
            'Bifidobacterium longum NCC2705 NC_004307'
            'Bordetella avium 197N NC_010645'
            'Bordetella bronchiseptica RB50 NC_002927'
            'Bordetella parapertussis 12822 NC_002928'
            'Bordetella pertussis Tohama I NC_002929'
            'Bordetella petrii DSM 12804 NC_010170'
            'Borrelia afzelii PKo NC_008277'
            'Borrelia burgdorferi B31 NC_001318'
            'Borrelia garinii PBi NC_006156'
            'Bradyrhizobium diazoefficiens USDA 110 NC_004463'
            'Bradyrhizobium sp. BTAi1 NC_009485'
            'Bradyrhizobium sp. ORS 278 NC_009445'
            'Brucella abortus 2308 NC_007618'
            'Brucella abortus S19 NC_010740'
            'Brucella abortus bv. 1 str. 9-941 NC_006932'
            'Brucella canis ATCC 23365 NC_010103'
            'Brucella melitensis bv. 1 str. 16M NC_003317'
            'Brucella ovis ATCC 25840 NC_009504'
            'Brucella suis 1330 NC_004310'
            'Brucella suis ATCC 23445 NC_010167'
            'Buchnera aphidicola BCc NC_008513'
            'Buchnera aphidicola str. APS (Acyrthosiphon pisum) NC_002528'
            'Buchnera aphidicola str. Bp (Baizongia pistaciae) NC_004545'
            'Buchnera aphidicola str. Sg (Schizaphis graminum) NC_004061'
            'Burkholderia ambifaria AMMD NC_008390'
            'Burkholderia ambifaria MC40-6 NC_010551'
            'Burkholderia cenocepacia AU 1054 NC_008060'
            'Burkholderia cenocepacia HI2424 NC_008542'
            'Burkholderia cenocepacia MC0-3 NC_010508'
            'Burkholderia lata NC_007509'
            'Burkholderia mallei ATCC 23344 NC_006348'
            'Burkholderia mallei NCTC 10229 NC_008835'
            'Burkholderia mallei NCTC 10247 NC_009079'
            'Burkholderia mallei SAVP1 NC_008784'
            'Burkholderia multivorans ATCC 17616 NC_010084'
            'Burkholderia phymatum STM815 NC_010622'
            'Burkholderia pseudomallei 1106a NC_009076'
            'Burkholderia pseudomallei 1710b NC_007434'
            'Burkholderia pseudomallei 668 NC_009074'
            'Burkholderia pseudomallei K96243 NC_006350'
            'Burkholderia thailandensis E264 NC_007650'
            'Burkholderia vietnamiensis G4 NC_009254'
            'Burkholderia xenovorans LB400 NC_007951'
            'Caldanaerobacter subterraneus subsp. tengcongensis MB4 NC_003869'
            'Caldicellulosiruptor saccharolyticus DSM 8903 NC_009437'
            'Caldivirga maquilingensis IC-167 NC_009954'
            'Campylobacter concisus 13826 NC_009802'
            'Campylobacter curvus 525.92 NC_009715'
            'Campylobacter fetus subsp. fetus 82-40 NC_008599'
            'Campylobacter hominis ATCC BAA-381 NC_009714'
            'Campylobacter jejuni RM1221 NC_003912'
            'Campylobacter jejuni subsp. doylei 269.97 NC_009707'
            'Campylobacter jejuni subsp. jejuni 81-176 NC_008787'
            'Campylobacter jejuni subsp. jejuni 81116 NC_009839'
            'Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 NC_002163'
            'Candidatus Blochmannia floridanus NC_005061'
            'Candidatus Blochmannia pennsylvanicus str. BPEN NC_007292'
            'Candidatus Carsonella ruddii PV NC_008512'
            'Candidatus Desulforudis audaxviator MP104C NC_010424'
            'Candidatus Korarchaeum cryptofilum OPF8 NC_010482'
            'Candidatus Koribacter versatilis Ellin345 NC_008009'
            'Candidatus Pelagibacter ubique HTCC1062 NC_007205'
            'Candidatus Protochlamydia amoebophila UWE25 NC_005861'
            'Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica) NC_008610'
            'Candidatus Solibacter usitatus Ellin6076 NC_008536'
            'Candidatus Sulcia muelleri GWSS NC_010118'
            'Candidatus Vesicomyosocius okutanii HA NC_009465'
            'Carboxydothermus hydrogenoformans Z-2901 NC_007503'
            'Caulobacter crescentus CB15 NC_002696'
            'Caulobacter sp. K31 NC_010338'
            'Chelativorans sp. BNC1 NC_008254'
            'Chlamydia muridarum str. Nigg NC_002620'
            'Chlamydia trachomatis 434/Bu NC_010287'
            'Chlamydia trachomatis A/HAR-13 NC_007429'
            'Chlamydia trachomatis D/UW-3/CX NC_000117'
            'Chlamydia trachomatis L2b/UCH-1/proctitis NC_010280'
            'Chlamydophila abortus S26/3 NC_004552'
            'Chlamydophila caviae GPIC NC_003361'
            'Chlamydophila felis Fe/C-56 NC_007899'
            'Chlamydophila pneumoniae AR39 NC_002179'
            'Chlamydophila pneumoniae CWL029 NC_000922'
            'Chlamydophila pneumoniae J138 NC_002491'
            'Chlamydophila pneumoniae TW-183 NC_005043'
            'Chlorobium chlorochromatii CaD3 NC_007514'
            'Chlorobium luteolum DSM 273 NC_007512'
            'Chlorobium phaeobacteroides BS1 NC_010831'
            'Chlorobium phaeobacteroides DSM 266 NC_008639'
            'Chlorobium phaeovibrioides DSM 265 NC_009337'
            'Chlorobium tepidum TLS NC_002932'
            'Chloroflexus aurantiacus J-10-fl NC_010175'
            'Chromobacterium violaceum ATCC 12472 NC_005085'
            'Chromohalobacter salexigens DSM 3043 NC_007963'
            'Citrobacter koseri ATCC BAA-895 NC_009792'
            'Clavibacter michiganensis subsp. michiganensis NCPPB 382 NC_009480'
            'Clavibacter michiganensis subsp. sepedonicus NC_010407'
            'Clostridium acetobutylicum ATCC 824 NC_003030'
            'Clostridium beijerinckii NCIMB 8052 NC_009617'
            'Clostridium botulinum A str. ATCC 19397 NC_009697'
            'Clostridium botulinum A str. ATCC 3502 NC_009495'
            'Clostridium botulinum A str. Hall NC_009698'
            'Clostridium botulinum A3 str. Loch Maree NC_010520'
            'Clostridium botulinum B str. Eklund 17B (NRP) NC_010674'
            'Clostridium botulinum B1 str. Okra NC_010516'
            'Clostridium botulinum F str. Langeland NC_009699'
            'Clostridium kluyveri DSM 555 NC_009706'
            'Clostridium novyi NT NC_008593'
            'Clostridium perfringens ATCC 13124 NC_008261'
            'Clostridium perfringens SM101 NC_008262'
            'Clostridium perfringens str. 13 NC_003366'
            'Clostridium tetani E88 NC_004557'
            'Colwellia psychrerythraea 34H NC_003910'
            'Corynebacterium diphtheriae NCTC 13129 NC_002935'
            'Corynebacterium efficiens YS-314 NC_004369'
            'Corynebacterium glutamicum ATCC 13032 NC_003450'
            'Corynebacterium glutamicum ATCC 13032 NC_006958'
            'Corynebacterium glutamicum R NC_009342'
            'Corynebacterium jeikeium K411 NC_007164'
            'Corynebacterium urealyticum DSM 7109 NC_010545'
            'Coxiella burnetii Dugway 5J108-111 NC_009727'
            'Coxiella burnetii RSA 331 NC_010117'
            'Coxiella burnetii RSA 493 NC_002971'
            'Cronobacter sakazakii ATCC BAA-894 NC_009778'
            'Cupriavidus metallidurans CH34 NC_007973'
            'Cupriavidus taiwanensis LMG 19424 NC_010530'
            'Cyanothece sp. ATCC 51142 NC_010546'
            'Cytophaga hutchinsonii ATCC 33406 NC_008255'
            'Dechloromonas aromatica RCB NC_007298'
            'Dehalococcoides mccartyi 195 NC_002936'
            'Dehalococcoides mccartyi BAV1 NC_009455'
            'Dehalococcoides mccartyi CBDB1 NC_007356'
            'Deinococcus geothermalis DSM 11300 NC_008010'
            'Deinococcus radiodurans R1 NC_001263'
            'Delftia acidovorans SPH-1 NC_010002'
            'Desulfitobacterium hafniense Y51 NC_007907'
            'Desulfococcus oleovorans Hxd3 NC_009943'
            'Desulfotalea psychrophila LSv54 NC_006138'
            'Desulfotomaculum reducens MI-1 NC_009253'
            'Desulfovibrio alaskensis G20 NC_007519'
            'Desulfovibrio vulgaris DP4 NC_008751'
            'Desulfovibrio vulgaris str. Hildenborough NC_002937'
            'Dichelobacter nodosus VCS1703A NC_009446'
            'Dinoroseobacter shibae DFL 12 = DSM 16493 NC_009952'
            'Ehrlichia canis str. Jake NC_007354'
            'Ehrlichia chaffeensis str. Arkansas NC_007799'
            'Ehrlichia ruminantium str. Gardel NC_006831'
            'Enterobacter sp. 638 NC_009436'
            'Enterococcus faecalis V583 NC_004668'
            'Erwinia tasmaniensis Et1/99 NC_010694'
            'Escherichia coli 536 NC_008253'
            'Escherichia coli APEC O1 NC_008563'
            'Escherichia coli ATCC 8739 NC_010468'
            'Escherichia coli CFT073 NC_004431'
            'Escherichia coli E24377A NC_009801'
            'Escherichia coli HS NC_009800'
            'Escherichia coli O157:H7 str. EDL933 NC_002655'
            'Escherichia coli O157:H7 str. Sakai NC_002695'
            'Escherichia coli SMS-3-5 NC_010498'
            'Escherichia coli UTI89 NC_007946'
            'Escherichia coli str. K-12 substr. DH10B NC_010473'
            'Escherichia coli str. K-12 substr. MG1655 NC_000913'
            'Escherichia coli str. K-12 substr. W3110 AC_000091'
            'Exiguobacterium sibiricum 255-15 NC_010556'
            'Fervidobacterium nodosum Rt17-B1 NC_009718'
            'Finegoldia magna ATCC 29328 NC_010376'
            'Flavobacterium johnsoniae UW101 NC_009441'
            'Flavobacterium psychrophilum JIP02/86 NC_009613'
            'Francisella philomiragia subsp. philomiragia ATCC 25017 NC_010336'
            'Francisella tularensis subsp. holarctica FTNF002-00 NC_009749'
            'Francisella tularensis subsp. holarctica LVS NC_007880'
            'Francisella tularensis subsp. holarctica OSU18 NC_008369'
            'Francisella tularensis subsp. mediasiatica FSC147 NC_010677'
            'Francisella tularensis subsp. novicida U112 NC_008601'
            'Francisella tularensis subsp. tularensis FSC198 NC_008245'
            'Francisella tularensis subsp. tularensis SCHU S4 NC_006570'
            'Francisella tularensis subsp. tularensis WY96-3418 NC_009257'
            'Frankia alni ACN14a NC_008278'
            'Frankia sp. CcI3 NC_007777'
            'Frankia sp. EAN1pec NC_009921'
            'Fusobacterium nucleatum subsp. nucleatum ATCC 25586 NC_003454'
            'Geobacillus kaustophilus HTA426 NC_006510'
            'Geobacillus thermodenitrificans NG80-2 NC_009328'
            'Geobacter lovleyi SZ NC_010814'
            'Geobacter metallireducens GS-15 NC_007517'
            'Geobacter sulfurreducens PCA NC_002939'
            'Geobacter uraniireducens Rf4 NC_009483'
            'Gloeobacter violaceus PCC 7421 NC_005125'
            'Gluconacetobacter diazotrophicus PA1 5 NC_010125'
            'Gluconobacter oxydans 621H NC_006677'
            'Gramella forsetii KT0803 NC_008571'
            'Haemophilus ducreyi 35000HP NC_002940'
            'Haemophilus influenzae 86-028NP NC_007146'
            'Haemophilus influenzae PittEE NC_009566'
            'Haemophilus influenzae PittGG NC_009567'
            'Haemophilus influenzae Rd KW20 NC_000907'
            'Haemophilus somnus 129PT NC_008309'
            'Haemophilus somnus 2336 NC_010519'
            'Hahella chejuensis KCTC 2396 NC_007645'
            'Haloarcula marismortui ATCC 43049 NC_006396'
            'Halobacterium salinarum R1 NC_010364'
            'Halobacterium sp. NRC-1 NC_002607'
            'Haloquadratum walsbyi DSM 16790 NC_008212'
            'Halorhodospira halophila SL1 NC_008789'
            'Helicobacter acinonychis str. Sheeba NC_008229'
            'Helicobacter hepaticus ATCC 51449 NC_004917'
            'Helicobacter pylori 26695 NC_000915'
            'Helicobacter pylori HPAG1 NC_008086'
            'Helicobacter pylori J99 NC_000921'
            'Heliobacterium modesticaldum Ice1 NC_010337'
            'Herpetosiphon aurantiacus DSM 785 NC_009972'
            'Hyperthermus butylicus DSM 5456 NC_008818'
            'Hyphomonas neptunium ATCC 15444 NC_008358'
            'Idiomarina loihiensis L2TR NC_006512'
            'Ignicoccus hospitalis KIN4/I NC_009776'
            'Jannaschia sp. CCS1 NC_007802'
            'Janthinobacterium sp. Marseille NC_009659'
            'Kineococcus radiotolerans SRS30216 = ATCC BAA-149 NC_009664'
            'Klebsiella pneumoniae subsp. pneumoniae MGH 78578 NC_009648'
            'Lachnoclostridium phytofermentans ISDg NC_010001'
            'Lactobacillus acidophilus NCFM NC_006814'
            'Lactobacillus brevis ATCC 367 NC_008497'
            'Lactobacillus casei ATCC 334 NC_008526'
            'Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 NC_008054'
            'Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 NC_008529'
            'Lactobacillus fermentum IFO 3956 NC_010610'
            'Lactobacillus gasseri ATCC 33323 NC_008530'
            'Lactobacillus helveticus DPC 4571 NC_010080'
            'Lactobacillus johnsonii NCC 533 NC_005362'
            'Lactobacillus plantarum WCFS1 NC_004567'
            'Lactobacillus reuteri DSM 20016 NC_009513'
            'Lactobacillus sakei subsp. sakei 23K NC_007576'
            'Lactobacillus salivarius UCC118 NC_007929'
            'Lactococcus lactis subsp. cremoris MG1363 NC_009004'
            'Lactococcus lactis subsp. cremoris SK11 NC_008527'
            'Lactococcus lactis subsp. lactis Il1403 NC_002662'
            'Lawsonia intracellularis PHE/MN1-00 NC_008011'
            'Legionella pneumophila str. Corby NC_009494'
            'Legionella pneumophila str. Lens NC_006369'
            'Legionella pneumophila str. Paris NC_006368'
            'Legionella pneumophila subsp. pneumophila str. Philadelphia 1 NC_002942'
            'Leifsonia xyli subsp. xyli str. CTCB07 NC_006087'
            'Leptospira biflexa serovar Patoc strain Patoc 1 (Ames) NC_010842'
            'Leptospira biflexa serovar Patoc strain Patoc 1 (Paris) NC_010602'
            'Leptospira borgpetersenii serovar Hardjo-bovis str. JB197 NC_008510'
            'Leptospira borgpetersenii serovar Hardjo-bovis str. L550 NC_008508'
            'Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 NC_005823'
            'Leptospira interrogans serovar Lai str. 56601 NC_004342'
            'Leptothrix cholodnii SP-6 NC_010524'
            'Leuconostoc citreum KM20 NC_010471'
            'Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 NC_008531'
            'Listeria innocua Clip11262 NC_003212'
            'Listeria monocytogenes EGD-e NC_003210'
            'Listeria monocytogenes serotype 4b str. F2365 NC_002973'
            'Listeria welshimeri serovar 6b str. SLCC5334 NC_008555'
            'Lysinibacillus sphaericus C3-41 NC_010382'
            'Magnetococcus marinus MC-1 NC_008576'
            'Magnetospirillum magneticum AMB-1 NC_007626'
            'Mannheimia succiniciproducens MBEL55E NC_006300'
            'Maricaulis maris MCS10 NC_008347'
            'Marinobacter aquaeolei VT8 NC_008740'
            'Marinomonas sp. MWYL1 NC_009654'
            'Mesoplasma florum L1 NC_006055'
            'Mesorhizobium loti MAFF303099 NC_002678'
            'Metallosphaera sedula DSM 5348 NC_009440'
            'Methanobrevibacter smithii ATCC 35061 NC_009515'
            'Methanocaldococcus jannaschii DSM 2661 NC_000909'
            'Methanococcoides burtonii DSM 6242 NC_007955'
            'Methanococcus aeolicus Nankai-3 NC_009635'
            'Methanococcus maripaludis C5 NC_009135'
            'Methanococcus maripaludis C6 NC_009975'
            'Methanococcus maripaludis C7 NC_009637'
            'Methanococcus maripaludis S2 NC_005791'
            'Methanococcus vannielii SB NC_009634'
            'Methanocorpusculum labreanum Z NC_008942'
            'Methanoculleus marisnigri JR1 NC_009051'
            'Methanopyrus kandleri AV19 NC_003551'
            'Methanoregula boonei 6A8 NC_009712'
            'Methanosaeta thermophila PT NC_008553'
            'Methanosarcina acetivorans C2A NC_003552'
            'Methanosarcina barkeri str. Fusaro NC_007355'
            'Methanosarcina mazei Go1 NC_003901'
            'Methanosphaera stadtmanae DSM 3091 NC_007681'
            'Methanospirillum hungatei JF-1 NC_007796'
            'Methanothermobacter thermautotrophicus str. Delta H NC_000916'
            'Methylibium petroleiphilum PM1 NC_008825'
            'Methylobacillus flagellatus KT NC_007947'
            'Methylobacterium extorquens PA1 NC_010172'
            'Methylobacterium radiotolerans JCM 2831 NC_010505'
            'Methylobacterium sp. 4-46 NC_010511'
            'Methylococcus capsulatus str. Bath NC_002977'
            'Microcystis aeruginosa NIES-843 NC_010296'
            'Moorella thermoacetica ATCC 39073 NC_007644'
            'Mycobacterium abscessus NC_010397'
            'Mycobacterium avium 104 NC_008595'
            'Mycobacterium avium subsp. paratuberculosis K-10 NC_002944'
            'Mycobacterium bovis AF2122/97 NC_002945'
            'Mycobacterium bovis BCG str. Pasteur 1173P2 NC_008769'
            'Mycobacterium gilvum PYR-GCK NC_009338'
            'Mycobacterium leprae TN NC_002677'
            'Mycobacterium marinum M NC_010612'
            'Mycobacterium smegmatis str. MC2 155 NC_008596'
            'Mycobacterium sp. JLS NC_009077'
            'Mycobacterium sp. KMS NC_008705'
            'Mycobacterium sp. MCS NC_008146'
            'Mycobacterium tuberculosis CDC1551 NC_002755'
            'Mycobacterium tuberculosis F11 NC_009565'
            'Mycobacterium tuberculosis H37Ra NC_009525'
            'Mycobacterium tuberculosis H37Rv NC_000962'
            'Mycobacterium ulcerans Agy99 NC_008611'
            'Mycobacterium vanbaalenii PYR-1 NC_008726'
            'Mycoplasma agalactiae PG2 NC_009497'
            'Mycoplasma capricolum subsp. capricolum ATCC 27343 NC_007633'
            'Mycoplasma gallisepticum str. R(low) NC_004829'
            'Mycoplasma genitalium G37 NC_000908'
            'Mycoplasma hyopneumoniae 232 NC_006360'
            'Mycoplasma hyopneumoniae 7448 NC_007332'
            'Mycoplasma hyopneumoniae J NC_007295'
            'Mycoplasma mobile 163K NC_006908'
            'Mycoplasma mycoides subsp. mycoides SC str. PG1 NC_005364'
            'Mycoplasma penetrans HF-2 NC_004432'
            'Mycoplasma pneumoniae M129 NC_000912'
            'Mycoplasma pulmonis UAB CTIP NC_002771'
            'Mycoplasma synoviae 53 NC_007294'
            'Myxococcus xanthus DK 1622 NC_008095'
            'Nanoarchaeum equitans Kin4-M NC_005213'
            'Natronomonas pharaonis DSM 2160 NC_007426'
            'Neisseria gonorrhoeae FA 1090 NC_002946'
            'Neisseria meningitidis 053442 NC_010120'
            'Neisseria meningitidis FAM18 NC_008767'
            'Neisseria meningitidis MC58 NC_003112'
            'Neisseria meningitidis Z2491 NC_003116'
            'Neorickettsia sennetsu str. Miyayama NC_007798'
            'Nitratiruptor sp. SB155-2 NC_009662'
            'Nitrobacter hamburgensis X14 NC_007964'
            'Nitrobacter winogradskyi Nb-255 NC_007406'
            'Nitrosococcus oceani ATCC 19707 NC_007484'
            'Nitrosomonas europaea ATCC 19718 NC_004757'
            'Nitrosomonas eutropha C91 NC_008344'
            'Nitrosopumilus maritimus SCM1 NC_010085'
            'Nitrosospira multiformis ATCC 25196 NC_007614'
            'Nocardia farcinica IFM 10152 NC_006361'
            'Nocardioides sp. JS614 NC_008699'
            'Nostoc punctiforme PCC 73102 NC_010628'
            'Nostoc sp. PCC 7120 NC_003272'
            'Novosphingobium aromaticivorans DSM 12444 NC_007794'
            'Oceanobacillus iheyensis HTE831 NC_004193'
            'Ochrobactrum anthropi ATCC 49188 NC_009667'
            'Oenococcus oeni PSU-1 NC_008528'
            'Onion yellows phytoplasma OY-M NC_005303'
            'Opitutus terrae PB90-1 NC_010571'
            'Orientia tsutsugamushi str. Boryong NC_009488'
            'Orientia tsutsugamushi str. Ikeda NC_010793'
            'Parabacteroides distasonis ATCC 8503 NC_009615'
            'Paracoccus denitrificans PD1222 NC_008686'
            'Parvibaculum lavamentivorans DS-1 NC_009719'
            'Pasteurella multocida subsp. multocida str. Pm70 NC_002663'
            'Pectobacterium atrosepticum SCRI1043 NC_004547'
            'Pediococcus pentosaceus ATCC 25745 NC_008525'
            'Pelobacter carbinolicus DSM 2380 NC_007498'
            'Pelobacter propionicus DSM 2379 NC_008609'
            'Pelotomaculum thermopropionicum SI NC_009454'
            'Peptoclostridium difficile 630 NC_009089'
            'Petrotoga mobilis SJ95 NC_010003'
            'Photobacterium profundum SS9 NC_006370'
            'Photorhabdus luminescens subsp. laumondii TTO1 NC_005126'
            'Picrophilus torridus DSM 9790 NC_005877'
            'Polaromonas naphthalenivorans CJ2 NC_008781'
            'Polaromonas sp. JS666 NC_007948'
            'Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 NC_009379'
            'Polynucleobacter necessarius subsp. necessarius STIR1 NC_010531'
            'Porphyromonas gingivalis ATCC 33277 NC_010729'
            'Porphyromonas gingivalis W83 NC_002950'
            'Prochlorococcus marinus str. AS9601 NC_008816'
            'Prochlorococcus marinus str. MIT 9211 NC_009976'
            'Prochlorococcus marinus str. MIT 9215 NC_009840'
            'Prochlorococcus marinus str. MIT 9301 NC_009091'
            'Prochlorococcus marinus str. MIT 9303 NC_008820'
            'Prochlorococcus marinus str. MIT 9312 NC_007577'
            'Prochlorococcus marinus str. MIT 9515 NC_008817'
            'Prochlorococcus marinus str. NATL1A NC_008819'
            'Prochlorococcus marinus str. NATL2A NC_007335'
            'Prochlorococcus marinus subsp. marinus str. CCMP1375 NC_005042'
            'Prochlorococcus marinus subsp. pastoris str. CCMP1986 NC_005072'
            'Propionibacterium acnes KPA171202 NC_006085'
            'Pseudoalteromonas atlantica T6c NC_008228'
            'Pseudoalteromonas haloplanktis TAC125 NC_007481'
            'Pseudomonas aeruginosa PA7 NC_009656'
            'Pseudomonas aeruginosa PAO1 NC_002516'
            'Pseudomonas aeruginosa UCBPP-PA14 NC_008463'
            'Pseudomonas fluorescens Pf0-1 NC_007492'
            'Pseudomonas mendocina ymp NC_009439'
            'Pseudomonas protegens Pf-5 NC_004129'
            'Pseudomonas putida F1 NC_009512'
            'Pseudomonas putida GB-1 NC_010322'
            'Pseudomonas putida KT2440 NC_002947'
            'Pseudomonas putida W619 NC_010501'
            'Pseudomonas stutzeri A1501 NC_009434'
            'Pseudomonas syringae pv. phaseolicola 1448A NC_005773'
            'Pseudomonas syringae pv. syringae B728a NC_007005'
            'Pseudomonas syringae pv. tomato str. DC3000 NC_004578'
            'Psychrobacter arcticus 273-4 NC_007204'
            'Psychrobacter cryohalolentis K5 NC_007969'
            'Psychrobacter sp. PRwf-1 NC_009524'
            'Psychromonas ingrahamii 37 NC_008709'
            'Pyrobaculum aerophilum str. IM2 NC_003364'
            'Pyrobaculum arsenaticum DSM 13514 NC_009376'
            'Pyrobaculum calidifontis JCM 11548 NC_009073'
            'Pyrobaculum islandicum DSM 4184 NC_008701'
            'Pyrobaculum neutrophilum V24Sta NC_010525'
            'Pyrococcus abyssi GE5 NC_000868'
            'Pyrococcus furiosus DSM 3638 NC_003413'
            'Pyrococcus horikoshii OT3 NC_000961'
            'Ralstonia eutropha H16 NC_008313'
            'Ralstonia eutropha JMP134 NC_007347'
            'Ralstonia solanacearum GMI1000 NC_003295'
            'Rhizobium etli CFN 42 NC_007761'
            'Rhizobium etli CIAT 652 NC_010994'
            'Rhizobium leguminosarum bv. viciae 3841 NC_008380'
            'Rhodobacter sphaeroides 2.4.1 NC_007493'
            'Rhodobacter sphaeroides ATCC 17025 NC_009428'
            'Rhodobacter sphaeroides ATCC 17029 NC_009049'
            'Rhodococcus jostii RHA1 NC_008268'
            'Rhodoferax ferrireducens T118 NC_007908'
            'Rhodopirellula baltica SH 1 NC_005027'
            'Rhodopseudomonas palustris BisA53 NC_008435'
            'Rhodopseudomonas palustris BisB18 NC_007925'
            'Rhodopseudomonas palustris BisB5 NC_007958'
            'Rhodopseudomonas palustris CGA009 NC_005296'
            'Rhodopseudomonas palustris HaA2 NC_007778'
            'Rhodospirillum rubrum ATCC 11170 NC_007643'
            'Rickettsia akari str. Hartford NC_009881'
            'Rickettsia bellii OSU 85-389 NC_009883'
            'Rickettsia bellii RML369-C NC_007940'
            'Rickettsia canadensis str. McKiel NC_009879'
            'Rickettsia conorii str. Malish 7 NC_003103'
            'Rickettsia felis URRWXCal2 NC_007109'
            'Rickettsia massiliae MTU5 NC_009900'
            'Rickettsia rickettsii str. Iowa NC_010263'
            'Rickettsia rickettsii str. Sheila Smith NC_009882'
            'Rickettsia typhi str. Wilmington NC_006142'
            'Roseiflexus castenholzii DSM 13941 NC_009767'
            'Roseiflexus sp. RS-1 NC_009523'
            'Roseobacter denitrificans OCh 114 NC_008209'
            'Rubrobacter xylanophilus DSM 9941 NC_008148'
            'Ruegeria pomeroyi DSS-3 NC_003911'
            'Ruegeria sp. TM1040 NC_008042'
            'Ruminiclostridium thermocellum ATCC 27405 NC_009012'
            'Saccharophagus degradans 2-40 NC_007912'
            'Saccharopolyspora erythraea NRRL 2338 NC_009142'
            'Salinibacter ruber DSM 13855 NC_007677'
            'Salinispora arenicola CNS-205 NC_009953'
            'Salinispora tropica CNB-440 NC_009380'
            'Salmonella enterica subsp. arizonae serovar 62:z4,z23:- str. RSK2980 NC_010067'
            'Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 NC_006905'
            'Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 NC_006511'
            'Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7 NC_010102'
            'Salmonella enterica subsp. enterica serovar Typhi str. CT18 NC_003198'
            'Salmonella enterica subsp. enterica serovar Typhi str. Ty2 NC_004631'
            'Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 NC_003197'
            'Serratia proteamaculans 568 NC_009832'
            'Shewanella amazonensis SB2B NC_008700'
            'Shewanella baltica OS155 NC_009052'
            'Shewanella baltica OS185 NC_009665'
            'Shewanella baltica OS195 NC_009997'
            'Shewanella denitrificans OS217 NC_007954'
            'Shewanella frigidimarina NCIMB 400 NC_008345'
            'Shewanella halifaxensis HAW-EB4 NC_010334'
            'Shewanella loihica PV-4 NC_009092'
            'Shewanella oneidensis MR-1 NC_004347'
            'Shewanella pealeana ATCC 700345 NC_009901'
            'Shewanella putrefaciens CN-32 NC_009438'
            'Shewanella sediminis HAW-EB3 NC_009831'
            'Shewanella sp. ANA-3 NC_008577'
            'Shewanella sp. MR-4 NC_008321'
            'Shewanella sp. MR-7 NC_008322'
            'Shewanella sp. W3-18-1 NC_008750'
            'Shewanella woodyi ATCC 51908 NC_010506'
            'Shigella boydii CDC 3083-94 NC_010658'
            'Shigella boydii Sb227 NC_007613'
            'Shigella dysenteriae Sd197 NC_007606'
            'Shigella flexneri 2a str. 2457T NC_004741'
            'Shigella flexneri 2a str. 301 NC_004337'
            'Shigella flexneri 5 str. 8401 NC_008258'
            'Shigella sonnei Ss046 NC_007384'
            'Sinorhizobium medicae WSM419 NC_009636'
            'Sinorhizobium meliloti 1021 NC_003047'
            'Sodalis glossinidius str. morsitans NC_007712'
            'Sorangium cellulosum So ce56 NC_010162'
            'Sphingomonas wittichii RW1 NC_009511'
            'Sphingopyxis alaskensis RB2256 NC_008048'
            'Staphylococcus aureus RF122 NC_007622'
            'Staphylococcus aureus subsp. aureus COL NC_002951'
            'Staphylococcus aureus subsp. aureus JH1 NC_009632'
            'Staphylococcus aureus subsp. aureus JH9 NC_009487'
            'Staphylococcus aureus subsp. aureus MRSA252 NC_002952'
            'Staphylococcus aureus subsp. aureus MW2 NC_003923'
            'Staphylococcus aureus subsp. aureus Mu3 NC_009782'
            'Staphylococcus aureus subsp. aureus Mu50 NC_002758'
            'Staphylococcus aureus subsp. aureus N315 NC_002745'
            'Staphylococcus aureus subsp. aureus NCTC 8325 NC_007795'
            'Staphylococcus aureus subsp. aureus USA300_FPR3757 NC_007793'
            'Staphylococcus aureus subsp. aureus USA300_TCH1516 NC_010079'
            'Staphylococcus aureus subsp. aureus str. Newman NC_009641'
            'Staphylococcus epidermidis ATCC 12228 NC_004461'
            'Staphylococcus epidermidis RP62A NC_002976'
            'Staphylococcus haemolyticus JCSC1435 NC_007168'
            'Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 NC_007350'
            'Staphylothermus marinus F1 NC_009033'
            'Streptococcus agalactiae 2603V/R NC_004116'
            'Streptococcus agalactiae A909 NC_007432'
            'Streptococcus agalactiae NEM316 NC_004368'
            'Streptococcus gordonii str. Challis substr. CH1 NC_009785'
            'Streptococcus mutans UA159 NC_004350'
            'Streptococcus pneumoniae CGSP14 NC_010582'
            'Streptococcus pneumoniae D39 NC_008533'
            'Streptococcus pneumoniae Hungary19A-6 NC_010380'
            'Streptococcus pneumoniae R6 NC_003098'
            'Streptococcus pneumoniae TIGR4 NC_003028'
            'Streptococcus pyogenes M1 GAS NC_002737'
            'Streptococcus pyogenes MGAS10270 NC_008022'
            'Streptococcus pyogenes MGAS10394 NC_006086'
            'Streptococcus pyogenes MGAS10750 NC_008024'
            'Streptococcus pyogenes MGAS2096 NC_008023'
            'Streptococcus pyogenes MGAS315 NC_004070'
            'Streptococcus pyogenes MGAS5005 NC_007297'
            'Streptococcus pyogenes MGAS6180 NC_007296'
            'Streptococcus pyogenes MGAS8232 NC_003485'
            'Streptococcus pyogenes MGAS9429 NC_008021'
            'Streptococcus pyogenes SSI-1 NC_004606'
            'Streptococcus pyogenes str. Manfredo NC_009332'
            'Streptococcus sanguinis SK36 NC_009009'
            'Streptococcus suis 05ZYH33 NC_009442'
            'Streptococcus suis 98HAH33 NC_009443'
            'Streptococcus thermophilus CNRZ1066 NC_006449'
            'Streptococcus thermophilus LMD-9 NC_008532'
            'Streptococcus thermophilus LMG 18311 NC_006448'
            'Streptomyces avermitilis MA-4680 = NBRC 14893 NC_003155'
            'Streptomyces griseus subsp. griseus NBRC 13350 NC_010572'
            'Sulfolobus acidocaldarius DSM 639 NC_007181'
            'Sulfolobus solfataricus P2 NC_002754'
            'Sulfolobus tokodaii str. 7 NC_003106'
            'Sulfurihydrogenibium sp. YO3AOP1 NC_010730'
            'Sulfurimonas denitrificans DSM 1251 NC_007575'
            'Sulfurovum sp. NBC37-1 NC_009663'
            'Symbiobacterium thermophilum IAM 14863 NC_006177'
            'Synechococcus elongatus PCC 6301 NC_006576'
            'Synechococcus elongatus PCC 7942 NC_007604'
            'Synechococcus sp. CC9311 NC_008319'
            'Synechococcus sp. CC9605 NC_007516'
            'Synechococcus sp. CC9902 NC_007513'
            'Synechococcus sp. JA-2-3Ba(2-13) NC_007776'
            'Synechococcus sp. JA-3-3Ab NC_007775'
            'Synechococcus sp. PCC 7002 NC_010475'
            'Synechococcus sp. RCC307 NC_009482'
            'Synechococcus sp. WH 7803 NC_009481'
            'Synechococcus sp. WH 8102 NC_005070'
            'Synechocystis sp. PCC 6803 NC_000911'
            'Syntrophobacter fumaroxidans MPOB NC_008554'
            'Syntrophomonas wolfei subsp. wolfei str. Goettingen G311 NC_008346'
            'Syntrophus aciditrophicus SB NC_007759'
            'Thermoanaerobacter pseudethanolicus ATCC 33223 NC_010321'
            'Thermoanaerobacter sp. X514 NC_010320'
            'Thermobifida fusca YX NC_007333'
            'Thermococcus kodakarensis KOD1 NC_006624'
            'Thermofilum pendens Hrk 5 NC_008698'
            'Thermoplasma acidophilum DSM 1728 NC_002578'
            'Thermoplasma volcanium GSS1 NC_002689'
            'Thermosipho melanesiensis BI429 NC_009616'
            'Thermosynechococcus elongatus BP-1 NC_004113'
            'Thermotoga lettingae TMO NC_009828'
            'Thermotoga maritima MSB8 NC_000853'
            'Thermotoga petrophila RKU-1 NC_009486'
            'Thermotoga sp. RQ2 NC_010483'
            'Thermus thermophilus HB27 NC_005835'
            'Thermus thermophilus HB8 NC_006461'
            'Thiobacillus denitrificans ATCC 25259 NC_007404'
            'Thiomicrospira crunogena XCL-2 NC_007520'
            'Treponema denticola ATCC 35405 NC_002967'
            'Treponema pallidum subsp. pallidum SS14 NC_010741'
            'Treponema pallidum subsp. pallidum str. Nichols NC_000919'
            'Trichodesmium erythraeum IMS101 NC_008312'
            'Tropheryma whipplei TW08/27 NC_004551'
            'Tropheryma whipplei str. Twist NC_004572'
            'Ureaplasma parvum serovar 3 str. ATCC 700970 NC_002162'
            'Verminephrobacter eiseniae EF01-2 NC_008786'
            'Vibrio campbellii ATCC BAA-1116 NC_009783'
            'Vibrio cholerae O1 biovar El Tor str. N16961 NC_002505'
            'Vibrio cholerae O395 NC_009457'
            'Vibrio fischeri ES114 NC_006840'
            'Vibrio parahaemolyticus RIMD 2210633 NC_004603'
            'Vibrio vulnificus CMCP6 NC_004459'
            'Vibrio vulnificus YJ016 NC_005139'
            'Wolbachia endosymbiont of Culex quinquefasciatus Pel NC_010981'
            'Wolbachia endosymbiont of Drosophila melanogaster NC_002978'
            'Wolbachia endosymbiont strain TRS of Brugia malayi NC_006833'
            'Wolinella succinogenes DSM 1740 NC_005090'
            'Xanthobacter autotrophicus Py2 NC_009720'
            'Xanthomonas axonopodis pv. citri str. 306 NC_003919'
            'Xanthomonas campestris pv. campestris str. 8004 NC_007086'
            'Xanthomonas campestris pv. campestris str. ATCC 33913 NC_003902'
            'Xanthomonas campestris pv. vesicatoria str. 85-10 NC_007508'
            'Xanthomonas oryzae pv. oryzae KACC 10331 NC_006834'
            'Xanthomonas oryzae pv. oryzae MAFF 311018 NC_007705'
            'Xylella fastidiosa 9a5c NC_002488'
            'Xylella fastidiosa M12 NC_010513'
            'Xylella fastidiosa M23 NC_010577'
            'Xylella fastidiosa Temecula1 NC_004556'
            'Yersinia enterocolitica subsp. enterocolitica 8081 NC_008800'
            'Yersinia pestis Angola NC_010159'
            'Yersinia pestis Antiqua NC_008150'
            'Yersinia pestis CO92 NC_003143'
            'Yersinia pestis KIM10+ NC_004088'
            'Yersinia pestis Nepal516 NC_008149'
            'Yersinia pestis Pestoides F NC_009381'
            'Yersinia pestis biovar Microtus str. 91001 NC_005810'
            'Yersinia pseudotuberculosis IP 31758 NC_009708'
            'Yersinia pseudotuberculosis IP 32953 NC_006155'
            'Yersinia pseudotuberculosis YPIII NC_010465'
            'Zymomonas mobilis subsp. mobilis ZM4 ATCC 31821 NC_006526'
            ;
END;

BEGIN TREES;
      TITLE 699_bacterial_genomes;
      LINK TAXA = Taxa;
      TREE UNTITLED = [&R] ((((((('Xylella fastidiosa Temecula1 NC_004556':0.0,'Xylella fastidiosa M23 NC_010577':7.05E-4):0.001091,'Xylella fastidiosa M12 NC_010513':3.0E-4):9.63E-4,'Xylella fastidiosa 9a5c NC_002488':0.001252):0.019675,((('Xanthomonas oryzae pv. oryzae MAFF 311018 NC_007705':7.5E-5,'Xanthomonas oryzae pv. oryzae KACC 10331 NC_006834':2.03E-4):0.001555,('Xanthomonas campestris pv. campestris str. 8004 NC_007086':0.0,'Xanthomonas campestris pv. campestris str. ATCC 33913 NC_003902':5.03E-4):0.001087):0.001979,('Xanthomonas axonopodis pv. citri str. 306 NC_003919':5.5E-4,'Xanthomonas campestris pv. vesicatoria str. 85-10 NC_007508':5.64E-4):0.00282):0.018397):0.047876,(((((((((((((((((((('Escherichia coli str. K-12 substr. DH10B NC_010473':0.0,('Escherichia coli str. K-12 substr. W3110 AC_000091':0.0,'Escherichia coli str. K-12 substr. MG1655 NC_000913':0.0):0.0):7.9E-5,'Escherichia coli CFT073 NC_004431':1.96E-4):9.0E-5,'Escherichia coli APEC O1 NC_008563':0.003957):0.001086,'Escherichia coli E24377A NC_009801':7.87E-4):5.87E-4,(('Shigella flexneri 5 str. 8401 NC_008258':5.53E-4,'Shigella flexneri 2a str. 301 NC_004337':0.0):1.0E-6,'Shigella flexneri 2a str. 2457T NC_004741':0.0):0.002341):5.63E-4,(('Shigella sonnei Ss046 NC_007384':0.002365,(('Shigella boydii Sb227 NC_007613':7.17E-4,'Shigella boydii CDC 3083-94 NC_010658':6.62E-4):0.001151,'Escherichia coli HS NC_009800':0.001609):2.15E-4):4.94E-4,(('Shigella dysenteriae Sd197 NC_007606':0.002009,('Escherichia coli SMS-3-5 NC_010498':0.002292,'Escherichia coli ATCC 8739 NC_010468':7.48E-4):5.25E-4):6.73E-4,('Escherichia coli O157:H7 str. EDL933 NC_002655':0.0,'Escherichia coli O157:H7 str. Sakai NC_002695':2.76E-4):0.003501):6.23E-4):0.001076):0.001093,('Escherichia coli UTI89 NC_007946':0.001768,'Escherichia coli 536 NC_008253':0.001551):0.003136):0.002994,((('Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 NC_003197':0.004263,('Salmonella enterica subsp. enterica serovar Typhi str. Ty2 NC_004631':0.0,'Salmonella enterica subsp. enterica serovar Typhi str. CT18 NC_003198':0.0):0.003544):0.002626,(('Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7 NC_010102':0.002146,'Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 NC_006511':0.002563):4.17E-4,'Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 NC_006905':0.004571):0.00201):0.00282,'Salmonella enterica subsp. arizonae serovar 62:z4,z23:- str. RSK2980 NC_010067':0.010667):0.002325):0.002926,'Citrobacter koseri ATCC BAA-895 NC_009792':0.013731):0.002191,('Klebsiella pneumoniae subsp. pneumoniae MGH 78578 NC_009648':0.011262,'Cronobacter sakazakii ATCC BAA-894 NC_009778':0.015343):4.97E-4):0.004409,'Enterobacter sp. 638 NC_009436':0.016857):0.003353,'Erwinia tasmaniensis Et1/99 NC_010694':0.019):0.00557,((((((('Yersinia pseudotuberculosis YPIII NC_010465':5.48E-4,'Yersinia pestis Angola NC_010159':2.78E-4):6.0E-6,'Yersinia pestis biovar Microtus str. 91001 NC_005810':2.69E-4):2.52E-4,(('Yersinia pseudotuberculosis IP 31758 NC_009708':0.0,((('Yersinia pestis Nepal516 NC_008149':0.0,'Yersinia pestis KIM10+ NC_004088':0.0):2.81E-4,'Yersinia pestis CO92 NC_003143':2.69E-4):7.0E-6,'Yersinia pestis Antiqua NC_008150':0.0):4.0E-6):2.55E-4,'Yersinia pestis Pestoides F NC_009381':8.47E-4):1.41E-4):2.22E-4,'Yersinia pseudotuberculosis IP 32953 NC_006155':3.31E-4):0.006143,'Yersinia enterocolitica subsp. enterocolitica 8081 NC_008800':0.010029):0.003547,'Serratia proteamaculans 568 NC_009832':0.013032):0.009044,'Pectobacterium atrosepticum SCRI1043 NC_004547':0.022349):0.002739):0.002915,('Sodalis glossinidius str. morsitans NC_007712':0.026871,'Photorhabdus luminescens subsp. laumondii TTO1 NC_005126':0.034423):0.005431):0.010536,((('Candidatus Blochmannia pennsylvanicus str. BPEN NC_007292':0.025763,'Candidatus Blochmannia floridanus NC_005061':0.040146):0.019952,'Baumannia cicadellinicola str. Hc (Homalodisca coagulata) NC_007984':0.045881):0.010633,(('Buchnera aphidicola str. APS (Acyrthosiphon pisum) NC_002528':0.013065,'Buchnera aphidicola str. Sg (Schizaphis graminum) NC_004061':0.016541):0.019346,('Buchnera aphidicola BCc NC_008513':0.052649,'Buchnera aphidicola str. Bp (Baizongia pistaciae) NC_004545':0.043937):0.003469):0.023776):0.013354):0.007958,((('Pasteurella multocida subsp. multocida str. Pm70 NC_002663':0.023671,('Haemophilus somnus 2336 NC_010519':0.00372,'Haemophilus somnus 129PT NC_008309':0.0):0.037151):0.003341,(('Mannheimia succiniciproducens MBEL55E NC_006300':0.024881,'Haemophilus influenzae PittGG NC_009567':0.029598):0.002905,'Actinobacillus succinogenes 130Z NC_009655':0.031405):0.003322):0.003393,(((('Haemophilus influenzae PittEE NC_009566':0.031398,'Haemophilus influenzae 86-028NP NC_007146':0.0):0.021101,'Haemophilus influenzae Rd KW20 NC_000907':0.0):0.038354,(('Actinobacillus pleuropneumoniae serovar 7 str. AP76 NC_010939':1.28E-4,'Actinobacillus pleuropneumoniae serovar 3 str. JL03 NC_010278':1.47E-4):2.11E-4,'Actinobacillus pleuropneumoniae serovar 5b str. L20 NC_009053':6.08E-4):0.009525):0.011611,'Haemophilus ducreyi 35000HP NC_002940':0.028586):0.00735):0.037453):0.013086,(((((('Vibrio vulnificus YJ016 NC_005139':0.001118,'Vibrio vulnificus CMCP6 NC_004459':0.001103):0.012909,('Vibrio parahaemolyticus RIMD 2210633 NC_004603':0.01274,'Vibrio campbellii ATCC BAA-1116 NC_009783':0.010525):0.008326):0.003789,('Vibrio cholerae O395 NC_009457':0.0,'Vibrio cholerae O1 biovar El Tor str. N16961 NC_002505':6.3E-4):0.021434):0.006458,('Vibrio fischeri ES114 NC_006840':0.027652,'Photobacterium profundum SS9 NC_006370':0.025063):0.004633):0.015889,((((((('Shewanella woodyi ATCC 51908 NC_010506':0.006235,'Shewanella sediminis HAW-EB3 NC_009831':0.006936):0.006961,('Shewanella pealeana ATCC 700345 NC_009901':0.004038,'Shewanella halifaxensis HAW-EB4 NC_010334':0.00235):0.011175):0.004856,'Shewanella loihica PV-4 NC_009092':0.014348):0.00497,((('Shewanella putrefaciens CN-32 NC_009438':3.22E-4,'Shewanella sp. 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ANA-3 NC_008577':8.78E-4):0.001102):0.003508):0.001735):0.00694,(('Shewanella frigidimarina NCIMB 400 NC_008345':0.010928,'Shewanella denitrificans OS217 NC_007954':0.006715):0.006091,(('Shewanella baltica OS195 NC_009997':4.7E-4,'Shewanella baltica OS155 NC_009052':3.57E-4):0.001061,'Shewanella baltica OS185 NC_009665':0.001492):0.013405):0.002147):0.004104):0.004436,'Shewanella amazonensis SB2B NC_008700':0.021138):0.027714,((('Pseudoalteromonas haloplanktis TAC125 NC_007481':0.041202,'Colwellia psychrerythraea 34H NC_003910':0.049094):0.005072,'Idiomarina loihiensis L2TR NC_006512':0.048537):0.003557,'Pseudoalteromonas atlantica T6c NC_008228':0.050367):0.005166):0.001357,'Psychromonas ingrahamii 37 NC_008709':0.056515):0.003622):0.002116,('Aeromonas salmonicida subsp. salmonicida A449 NC_009348':0.008584,'Aeromonas hydrophila subsp. hydrophila ATCC 7966 NC_008570':0.006326):0.037384):0.004627):0.015944,('Saccharophagus degradans 2-40 NC_007912':0.056241,((((('Psychrobacter cryohalolentis K5 NC_007969':0.002225,'Psychrobacter arcticus 273-4 NC_007204':0.002715):0.014882,'Psychrobacter sp. 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Eklund 17B (NRP) NC_010674':0.011867,'Clostridium beijerinckii NCIMB 8052 NC_009617':0.016289):0.014781):0.024654):0.003356,'Clostridium novyi NT NC_008593':0.044584):0.032848,('Peptoclostridium difficile 630 NC_009089':0.061593,('Alkaliphilus oremlandii OhILAs NC_009922':0.033399,'Alkaliphilus metalliredigens QYMF NC_009633':0.027193):0.024808):0.0167):0.004661):0.004639,'Lachnoclostridium phytofermentans ISDg NC_010001':0.112006):8.31E-4):0.012348):0.005946,((((((((('Streptococcus thermophilus LMG 18311 NC_006448':0.0,('Streptococcus thermophilus LMD-9 NC_008532':1.1E-5,'Streptococcus thermophilus CNRZ1066 NC_006449':0.0):5.0E-6):0.014517,('Streptococcus suis 98HAH33 NC_009443':0.003712,'Streptococcus suis 05ZYH33 NC_009442':4.41E-4):0.016462):0.002367,((((('Streptococcus pyogenes SSI-1 NC_004606':0.0,(((((('Streptococcus pyogenes str. 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Newman NC_009641':0.0):0.00785):0.003075):0.042888,('Oceanobacillus iheyensis HTE831 NC_004193':0.049045,(('Lysinibacillus sphaericus C3-41 NC_010382':0.036444,(('Listeria welshimeri serovar 6b str. SLCC5334 NC_008555':4.64E-4,('Listeria monocytogenes serotype 4b str. F2365 NC_002973':1.28E-4,'Listeria monocytogenes EGD-e NC_003210':1.44E-4):3.63E-4):3.58E-4,'Listeria innocua Clip11262 NC_003212':8.53E-4):0.048578):0.002513,((('Bacillus weihenstephanensis KBAB4 NC_010184':0.004437,((((('Bacillus thuringiensis serovar konkukian str. 97-27 NC_005957':3.47E-4,'Bacillus cereus ATCC 10987 NC_003909':0.0):1.0E-4,'Bacillus cereus ATCC 14579 NC_004722':7.25E-4):1.23E-4,'Bacillus thuringiensis str. Al Hakam NC_008600':9.0E-5):5.8E-5,(('Bacillus anthracis str. Sterne NC_005945':3.0E-5,'Bacillus anthracis str. Ames NC_003997':0.0):1.5E-5,'Bacillus anthracis str. Ames Ancestor NC_007530':0.0):1.74E-4):1.19E-4,'Bacillus cereus E33L NC_006274':1.39E-4):0.001662):0.003672,'Bacillus cytotoxicus NVH 391-98 NC_009674':0.004312):0.024761,((('Bacillus subtilis subsp. subtilis str. 168 NC_000964':0.001541,'Bacillus amyloliquefaciens subsp. plantarum str. FZB42 NC_009725':0.001749):0.001654,('Bacillus licheniformis DSM 13 = ATCC 14580 NC_006322':0.0,'Bacillus licheniformis DSM 13 = ATCC 14580 NC_006270':1.21E-4):0.004234):0.00397,'Bacillus pumilus SAFR-032 NC_009848':0.009005):0.020633):0.004953):0.008741):0.002574):0.00499,('Geobacillus thermodenitrificans NG80-2 NC_009328':0.010747,'Geobacillus kaustophilus HTA426 NC_006510':0.011082):0.03796):3.6E-4,('Bacillus halodurans C-125 NC_002570':0.028271,'Bacillus clausii KSM-K16 NC_006582':0.026169):0.021697):0.005895,'Exiguobacterium sibiricum 255-15 NC_010556':0.060429):0.012991):0.019549,(('Onion yellows phytoplasma OY-M NC_005303':0.003005,'Aster yellows witches-broom phytoplasma AYWB NC_007716':0.00314):0.078926,'Acholeplasma laidlawii PG-8A NC_010163':0.07497):0.051579):0.004339):0.011516,('Fusobacterium nucleatum subsp. nucleatum ATCC 25586 NC_003454':0.144774,('Dehalococcoides mccartyi 195 NC_002936':0.004335,('Dehalococcoides mccartyi CBDB1 NC_007356':0.0,'Dehalococcoides mccartyi BAV1 NC_009455':1.98E-4):0.004416):0.150664):0.001947):0.008007):0.005287,((((('Tropheryma whipplei str. Twist NC_004572':3.2E-4,'Tropheryma whipplei TW08/27 NC_004551':0.0):0.075127,(('Leifsonia xyli subsp. xyli str. CTCB07 NC_006087':0.025498,('Clavibacter michiganensis subsp. sepedonicus NC_010407':0.0,'Clavibacter michiganensis subsp. michiganensis NCPPB 382 NC_009480':0.004015):0.024386):0.023543,('Arthrobacter aurescens TC1 NC_008711':0.015779,'Arthrobacter sp. FB24 NC_008541':0.015587):0.039987):0.009009):0.020428,(((('Thermobifida fusca YX NC_007333':0.073221,'Saccharopolyspora erythraea NRRL 2338 NC_009142':0.070582):0.010576,((('Rhodococcus jostii RHA1 NC_008268':0.031514,'Nocardia farcinica IFM 10152 NC_006361':0.03332):0.014858,((((('Mycobacterium vanbaalenii PYR-1 NC_008726':0.017341,'Mycobacterium gilvum PYR-GCK NC_009338':0.017827):0.010936,'Mycobacterium smegmatis str. MC2 155 NC_008596':0.026303):7.1E-4,(('Mycobacterium sp. MCS NC_008146':0.0,'Mycobacterium sp. KMS NC_008705':0.0):0.002678,'Mycobacterium sp. JLS NC_009077':0.002194):0.020507):0.013943,(((('Mycobacterium ulcerans Agy99 NC_008611':0.001229,'Mycobacterium marinum M NC_010612':3.23E-4):0.015441,('Mycobacterium tuberculosis H37Rv NC_000962':0.0,('Mycobacterium tuberculosis H37Ra NC_009525':0.0,('Mycobacterium tuberculosis F11 NC_009565':0.0,('Mycobacterium tuberculosis CDC1551 NC_002755':0.0,('Mycobacterium bovis BCG str. Pasteur 1173P2 NC_008769':0.0,'Mycobacterium bovis AF2122/97 NC_002945':0.0):0.0):0.0):0.0):0.0):0.015036):0.002477,'Mycobacterium avium 104 NC_008595':0.013875):0.003125,'Mycobacterium leprae TN NC_002677':0.019747):0.021824):0.003841,'Mycobacterium abscessus NC_010397':0.040449):0.01859):0.011124,((('Corynebacterium urealyticum DSM 7109 NC_010545':0.025142,'Corynebacterium jeikeium K411 NC_007164':0.027751):0.01271,'Corynebacterium diphtheriae NCTC 13129 NC_002935':0.039159):0.009382,(('Corynebacterium glutamicum R NC_009342':5.58E-4,('Corynebacterium glutamicum ATCC 13032 NC_003450':0.0,'Corynebacterium glutamicum ATCC 13032 NC_006958':7.29E-4):0.009926):0.02426,'Corynebacterium efficiens YS-314 NC_004369':0.025039):0.02337):0.033612):0.007099):0.00574,((((('Streptomyces griseus subsp. griseus NBRC 13350 NC_010572':0.018627,'Streptomyces avermitilis MA-4680 = NBRC 14893 NC_003155':0.021972):0.046135,'Kineococcus radiotolerans SRS30216 = ATCC BAA-149 NC_009664':0.062453):0.002502,'Nocardioides sp. JS614 NC_008699':0.072818):0.001583,('Salinispora tropica CNB-440 NC_009380':0.004715,'Salinispora arenicola CNS-205 NC_009953':0.004153):0.061295):0.002436,((('Frankia alni ACN14a NC_008278':0.007871,'Frankia sp. CcI3 NC_007777':0.009758):0.010517,'Frankia sp. EAN1pec NC_009921':0.02064):0.024714,'Acidothermus cellulolyticus 11B NC_008578':0.046115):0.013048):0.007923):0.004628,'Propionibacterium acnes KPA171202 NC_006085':0.097946):0.005481):0.010649,(('Bifidobacterium longum DJO10A NC_010816':0.0,'Bifidobacterium longum NCC2705 NC_004307':0.006562):0.037228,'Bifidobacterium adolescentis ATCC 15703 NC_008618':0.053812):0.09077):0.046847,'Rubrobacter xylanophilus DSM 9941 NC_008148':0.129937):0.004872):0.006416,((('Leptospira interrogans serovar Lai str. 56601 NC_004342':0.002839,'Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 NC_005823':0.001296):0.006775,('Leptospira borgpetersenii serovar Hardjo-bovis str. L550 NC_008508':0.0,'Leptospira borgpetersenii serovar Hardjo-bovis str. JB197 NC_008510':0.002515):0.004323):0.057878,('Leptospira biflexa serovar Patoc strain Patoc 1 (Paris) NC_010602':0.0,'Leptospira biflexa serovar Patoc strain Patoc 1 (Ames) NC_010842':0.003709):0.05359):0.091222):0.001531,((('Ureaplasma parvum serovar 3 str. ATCC 700970 NC_002162':0.06762,((('Mycoplasma pneumoniae M129 NC_000912':0.012975,'Mycoplasma genitalium G37 NC_000908':0.014972):0.050026,'Mycoplasma gallisepticum str. R(low) NC_004829':0.058468):0.035288,'Mycoplasma penetrans HF-2 NC_004432':0.06552):4.23E-4):0.060917,((((('Mycoplasma synoviae 53 NC_007294':0.048987,'Mycoplasma agalactiae PG2 NC_009497':0.047014):0.007763,'Mycoplasma pulmonis UAB CTIP NC_002771':0.052168):0.008451,'Mycoplasma mobile 163K NC_006908':0.056454):0.002608,('Mycoplasma hyopneumoniae J NC_007295':2.14E-4,('Mycoplasma hyopneumoniae 7448 NC_007332':6.15E-4,'Mycoplasma hyopneumoniae 232 NC_006360':2.08E-4):2.98E-4):0.070067):0.055848,(('Mycoplasma mycoides subsp. mycoides SC str. PG1 NC_005364':0.0076,'Mycoplasma capricolum subsp. capricolum ATCC 27343 NC_007633':0.003798):0.036597,'Mesoplasma florum L1 NC_006055':0.032924):0.056588):0.011807):0.039804,('Rhodopirellula baltica SH 1 NC_005027':0.193194,(('Candidatus Protochlamydia amoebophila UWE25 NC_005861':0.065344,((((('Chlamydophila pneumoniae TW-183 NC_005043':0.0,'Chlamydophila pneumoniae J138 NC_002491':5.8E-4):3.24E-4,'Chlamydophila pneumoniae CWL029 NC_000922':0.0):3.32E-4,'Chlamydophila pneumoniae AR39 NC_002179':0.0):0.011513,(('Chlamydophila felis Fe/C-56 NC_007899':0.005934,'Chlamydophila caviae GPIC NC_003361':0.00582):0.001826,'Chlamydophila abortus S26/3 NC_004552':0.007095):0.007172):0.017628,((('Chlamydia trachomatis L2b/UCH-1/proctitis NC_010280':0.0,'Chlamydia trachomatis 434/Bu NC_010287':0.0):0.001057,('Chlamydia trachomatis A/HAR-13 NC_007429':0.001362,'Chlamydia trachomatis D/UW-3/CX NC_000117':3.06E-4):7.71E-4):0.008385,'Chlamydia muridarum str. Nigg NC_002620':0.007518):0.018425):0.048292):0.084292,'Opitutus terrae PB90-1 NC_010571':0.168244):0.008748):0.005959):0.002215):0.002145,(('Salinibacter ruber DSM 13855 NC_007677':0.158508,((((('Chlorobium phaeovibrioides DSM 265 NC_009337':0.009351,'Chlorobium luteolum DSM 273 NC_007512':0.007493):0.004924,'Chlorobium phaeobacteroides DSM 266 NC_008639':0.02108):0.006406,'Chlorobium tepidum TLS NC_002932':0.027931):0.001405,'Chlorobium chlorochromatii CaD3 NC_007514':0.028326):0.007882,'Chlorobium phaeobacteroides BS1 NC_010831':0.035937):0.09499):0.006921,((('Porphyromonas gingivalis W83 NC_002950':8.19E-4,'Porphyromonas gingivalis ATCC 33277 NC_010729':0.001158):0.074191,('Parabacteroides distasonis ATCC 8503 NC_009615':0.062469,('Bacteroides vulgatus ATCC 8482 NC_009614':0.046155,('Bacteroides thetaiotaomicron VPI-5482 NC_004663':0.013146,('Bacteroides fragilis YCH46 NC_006347':0.002783,'Bacteroides fragilis NCTC 9343 NC_003228':0.0):0.019854):0.018645):0.030223):0.008112):0.033791,((('Gramella forsetii KT0803 NC_008571':0.049464,('Flavobacterium psychrophilum JIP02/86 NC_009613':0.019306,'Flavobacterium johnsoniae UW101 NC_009441':0.025626):0.034352):0.023258,'Candidatus Sulcia muelleri GWSS NC_010118':0.126531):0.012741,'Cytophaga hutchinsonii ATCC 33406 NC_008255':0.085188):0.013273):0.020272):0.031247):7.07E-4,('Candidatus Solibacter usitatus Ellin6076 NC_008536':0.088889,'Candidatus Koribacter versatilis Ellin345 NC_008009':0.088021):0.060896):0.00536,((('Treponema pallidum subsp. pallidum SS14 NC_010741':3.86E-4,'Treponema pallidum subsp. pallidum str. Nichols NC_000919':0.0):0.05851,'Treponema denticola ATCC 35405 NC_002967':0.055175):0.065394,('Borrelia garinii PBi NC_006156':0.003906,('Borrelia burgdorferi B31 NC_001318':0.003572,'Borrelia afzelii PKo NC_008277':0.003236):4.48E-4):0.107179):0.039564):0.005177,((((('Wolinella succinogenes DSM 1740 NC_005090':0.036115,((('Helicobacter pylori J99 NC_000921':0.002334,('Helicobacter pylori HPAG1 NC_008086':0.001786,'Helicobacter pylori 26695 NC_000915':0.001988):0.001995):0.001223,'Helicobacter acinonychis str. Sheeba NC_008229':0.004787):0.04228,'Helicobacter hepaticus ATCC 51449 NC_004917':0.038937):0.004778):0.033997,('Sulfurimonas denitrificans DSM 1251 NC_007575':0.05692,'Arcobacter butzleri RM4018 NC_009850':0.058151):0.017464):0.001179,((('Campylobacter jejuni subsp. doylei 269.97 NC_009707':0.001064,(('Campylobacter jejuni RM1221 NC_003912':0.001751,'Campylobacter jejuni subsp. jejuni 81116 NC_009839':9.54E-4):0.002013,'Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 NC_002163':0.0):0.001278):8.41E-4,'Campylobacter jejuni subsp. jejuni 81-176 NC_008787':0.001108):0.047272,(('Campylobacter hominis ATCC BAA-381 NC_009714':0.043301,'Campylobacter fetus subsp. fetus 82-40 NC_008599':0.02254):0.008617,('Campylobacter curvus 525.92 NC_009715':0.013553,'Campylobacter concisus 13826 NC_009802':0.012677):0.021399):0.02053):0.023512):0.008414,'Sulfurovum sp. NBC37-1 NC_009663':0.062485):0.011493,'Nitratiruptor sp. SB155-2 NC_009662':0.078973):0.060131):0.004846,(((((('Syntrophus aciditrophicus SB NC_007759':0.076087,'Desulfococcus oleovorans Hxd3 NC_009943':0.062177):0.016204,'Syntrophobacter fumaroxidans MPOB NC_008554':0.074898):0.011471,'Desulfotalea psychrophila LSv54 NC_006138':0.08877):0.002536,((('Pelobacter propionicus DSM 2379 NC_008609':0.021221,'Geobacter lovleyi SZ NC_010814':0.026798):0.006129,('Geobacter uraniireducens Rf4 NC_009483':0.032336,('Geobacter sulfurreducens PCA NC_002939':0.014184,'Geobacter metallireducens GS-15 NC_007517':0.012321):0.016238):0.001266):0.021872,'Pelobacter carbinolicus DSM 2380 NC_007498':0.045563):0.017275):0.005686,('Sorangium cellulosum So ce56 NC_010162':0.118601,('Myxococcus xanthus DK 1622 NC_008095':0.07612,('Anaeromyxobacter dehalogenans 2CP-C NC_007760':0.015499,'Anaeromyxobacter sp. Fw109-5 NC_009675':0.01251):0.066126):0.030075):0.015004):0.00262,(('Lawsonia intracellularis PHE/MN1-00 NC_008011':0.072006,(('Desulfovibrio vulgaris str. Hildenborough NC_002937':0.0,'Desulfovibrio vulgaris DP4 NC_008751':0.00105):0.047794,'Desulfovibrio alaskensis G20 NC_007519':0.037534):0.013341):0.045865,'Bdellovibrio bacteriovorus HD100 NC_005363':0.124339):0.012418):0.007623):0.015802,(((((('Zymomonas mobilis subsp. mobilis ZM4 ATCC 31821 NC_006526':0.042906,(('Sphingopyxis alaskensis RB2256 NC_008048':0.036099,'Sphingomonas wittichii RW1 NC_009511':0.027851):0.001174,'Novosphingobium aromaticivorans DSM 12444 NC_007794':0.035039):0.007042):0.045581,(('Rhodospirillum rubrum ATCC 11170 NC_007643':0.050636,'Magnetospirillum magneticum AMB-1 NC_007626':0.056071):0.006739,(('Gluconobacter oxydans 621H NC_006677':0.024901,'Gluconacetobacter diazotrophicus PA1 5 NC_010125':0.022815):0.013188,'Acidiphilium cryptum JF-5 NC_009484':0.031925):0.035006):0.008156):7.66E-4,((((((('Xanthobacter autotrophicus Py2 NC_009720':0.024334,'Azorhizobium caulinodans ORS 571 NC_009937':0.022892):0.019758,(((((('Rhodopseudomonas palustris HaA2 NC_007778':0.009293,'Rhodopseudomonas palustris CGA009 NC_005296':0.008956):0.002659,'Rhodopseudomonas palustris BisB5 NC_007958':0.01029):0.001703,('Rhodopseudomonas palustris BisB18 NC_007925':0.009206,'Rhodopseudomonas palustris BisA53 NC_008435':0.005828):0.007901):0.001238,('Bradyrhizobium diazoefficiens USDA 110 NC_004463':0.014063,('Bradyrhizobium sp. ORS 278 NC_009445':0.00245,'Bradyrhizobium sp. BTAi1 NC_009485':0.004881):0.007408):0.004458):0.002646,('Nitrobacter winogradskyi Nb-255 NC_007406':0.004331,'Nitrobacter hamburgensis X14 NC_007964':0.006265):0.01449):0.026346,'Beijerinckia indica subsp. indica ATCC 9039 NC_010581':0.047315):0.006327):0.005265,(('Methylobacterium radiotolerans JCM 2831 NC_010505':0.017167,'Methylobacterium extorquens PA1 NC_010172':0.019451):0.013822,'Methylobacterium sp. 4-46 NC_010511':0.037226):0.019758):0.00434,'Parvibaculum lavamentivorans DS-1 NC_009719':0.050688):0.009653,((((('Sinorhizobium meliloti 1021 NC_003047':0.006907,'Sinorhizobium medicae WSM419 NC_009636':0.00638):0.010836,(('Rhizobium leguminosarum bv. viciae 3841 NC_008380':0.004429,'Rhizobium etli CIAT 652 NC_010994':0.008164):0.003191,'Rhizobium etli CFN 42 NC_007761':0.010063):0.009833):0.001914,'Agrobacterium fabrum str. C58 NC_003062':0.021311):0.017343,'Mesorhizobium loti MAFF303099 NC_002678':0.0394):0.002145,((('Ochrobactrum anthropi ATCC 49188 NC_009667':0.007551,('Brucella suis ATCC 23445 NC_010167':0.0,((('Brucella suis 1330 NC_004310':5.58E-4,((('Brucella ovis ATCC 25840 NC_009504':2.8E-5,'Brucella melitensis bv. 1 str. 16M NC_003317':0.0):2.1E-4,'Brucella abortus S19 NC_010740':6.5E-5):2.8E-5,'Brucella abortus bv. 1 str. 9-941 NC_006932':0.0):2.04E-4):7.89E-4,'Brucella abortus 2308 NC_007618':0.00115):4.9E-4,'Brucella canis ATCC 23365 NC_010103':0.0):1.4E-5):0.011079):0.019521,((('Bartonella tribocorum CIP 105476 NC_010161':0.002931,'Bartonella henselae str. Houston-1 NC_005956':0.005677):0.00201,'Bartonella quintana str. Toulouse NC_005955':0.007273):0.004883,'Bartonella bacilliformis KC583 NC_008783':0.012873):0.022836):0.007214,'Chelativorans sp. BNC1 NC_008254':0.031713):0.003666):0.018067):0.00574,'Maricaulis maris MCS10 NC_008347':0.060401):0.002561,('Hyphomonas neptunium ATCC 15444 NC_008358':0.06821,('Caulobacter crescentus CB15 NC_002696':0.012998,'Caulobacter sp. K31 NC_010338':0.014047):0.055914):0.007769):0.003895):0.001175,((('Ruegeria pomeroyi DSS-3 NC_003911':0.023741,'Ruegeria sp. TM1040 NC_008042':0.0267):0.008617,('Roseobacter denitrificans OCh 114 NC_008209':0.034964,('Jannaschia sp. CCS1 NC_007802':0.037123,'Dinoroseobacter shibae DFL 12 = DSM 16493 NC_009952':0.027071):0.004404):7.53E-4):0.015629,((('Rhodobacter sphaeroides ATCC 17029 NC_009049':0.003439,'Rhodobacter sphaeroides 2.4.1 NC_007493':0.002719):0.009342,'Rhodobacter sphaeroides ATCC 17025 NC_009428':0.01177):0.023212,'Paracoccus denitrificans PD1222 NC_008686':0.038409):0.012136):0.039271):0.006707,(((((('Wolbachia endosymbiont of Culex quinquefasciatus Pel NC_010981':0.007846,'Wolbachia endosymbiont of Drosophila melanogaster NC_002978':0.00771):0.004559,'Wolbachia endosymbiont strain TRS of Brugia malayi NC_006833':0.017809):0.047974,(('Ehrlichia ruminantium str. Gardel NC_006831':0.010399,('Ehrlichia chaffeensis str. Arkansas NC_007799':0.005841,'Ehrlichia canis str. Jake NC_007354':0.00989):0.003438):0.02972,('Anaplasma phagocytophilum str. HZ NC_007797':0.021865,'Anaplasma marginale str. St. Maries NC_004842':0.018626):0.015088):0.015428):0.021225,'Neorickettsia sennetsu str. Miyayama NC_007798':0.085012):0.01428,((('Rickettsia typhi str. Wilmington NC_006142':0.007741,(((((('Rickettsia rickettsii str. Sheila Smith NC_009882':1.43E-4,'Rickettsia rickettsii str. Iowa NC_010263':1.46E-4):9.58E-4,'Rickettsia conorii str. Malish 7 NC_003103':0.001068):7.99E-4,'Rickettsia massiliae MTU5 NC_009900':0.002097):9.67E-4,'Rickettsia felis URRWXCal2 NC_007109':0.004458):0.001431,'Rickettsia canadensis str. McKiel NC_009879':0.008386):0.002483,'Rickettsia akari str. Hartford NC_009881':0.00587):0.002453):0.002034,('Rickettsia bellii RML369-C NC_007940':0.0,'Rickettsia bellii OSU 85-389 NC_009883':5.1E-5):0.010062):0.029487,('Orientia tsutsugamushi str. Ikeda NC_010793':9.88E-4,'Orientia tsutsugamushi str. Boryong NC_009488':4.27E-4):0.05121):0.035716):0.011731,'Candidatus Pelagibacter ubique HTCC1062 NC_007205':0.102799):0.010516):0.024531,'Magnetococcus marinus MC-1 NC_008576':0.088619):0.003167):0.023355,(((('Francisella tularensis subsp. tularensis SCHU S4 NC_006570':0.0,(('Francisella tularensis subsp. mediasiatica FSC147 NC_010677':2.56E-4,('Francisella tularensis subsp. tularensis WY96-3418 NC_009257':8.29E-4,'Francisella tularensis subsp. tularensis FSC198 NC_008245':0.0):5.81E-4):5.52E-4,('Francisella tularensis subsp. holarctica OSU18 NC_008369':0.0,('Francisella tularensis subsp. holarctica FTNF002-00 NC_009749':2.44E-4,'Francisella tularensis subsp. holarctica LVS NC_007880':3.09E-4):0.001205):0.002798):9.9E-5):0.001695,'Francisella tularensis subsp. novicida U112 NC_008601':0.001013):0.005718,'Francisella philomiragia subsp. philomiragia ATCC 25017 NC_010336':0.006291):0.087159,'Candidatus Carsonella ruddii PV NC_008512':0.219266):0.003519):0.006484,'Dichelobacter nodosus VCS1703A NC_009446':0.091799):0.002392,((((((('Verminephrobacter eiseniae EF01-2 NC_008786':0.028272,(('Delftia acidovorans SPH-1 NC_010002':0.008022,'Acidovorax citrulli AAC00-1 NC_008752':0.012155):0.001606,'Acidovorax sp. JS42 NC_008782':0.010765):0.008284):0.002539,('Rhodoferax ferrireducens T118 NC_007908':0.010469,('Polaromonas naphthalenivorans CJ2 NC_008781':0.008892,'Polaromonas sp. JS666 NC_007948':0.010651):0.002829):0.007949):0.005722,('Methylibium petroleiphilum PM1 NC_008825':0.016925,'Leptothrix cholodnii SP-6 NC_010524':0.019544):0.007748):0.028795,((((('Ralstonia solanacearum GMI1000 NC_003295':0.011045,(('Cupriavidus metallidurans CH34 NC_007973':0.004726,('Ralstonia eutropha H16 NC_008313':0.006864,'Cupriavidus taiwanensis LMG 19424 NC_010530':0.004068):2.88E-4):0.001127,'Ralstonia eutropha JMP134 NC_007347':0.006529):0.006403):0.013707,(('Burkholderia xenovorans LB400 NC_007951':0.012763,'Burkholderia phymatum STM815 NC_010622':0.013488):0.005188,(((('Burkholderia vietnamiensis G4 NC_009254':0.001535,'Burkholderia cenocepacia MC0-3 NC_010508':0.001253):0.001111,('Burkholderia cenocepacia HI2424 NC_008542':2.0E-6,'Burkholderia cenocepacia AU 1054 NC_008060':0.0):0.002357):0.002052,(('Burkholderia ambifaria AMMD NC_008390':4.38E-4,'Burkholderia ambifaria MC40-6 NC_010551':9.52E-4):0.002521,'Burkholderia lata NC_007509':0.002643):0.001726):0.001888,(('Burkholderia thailandensis E264 NC_007650':0.003786,(('Burkholderia pseudomallei K96243 NC_006350':0.0,'Burkholderia pseudomallei 668 NC_009074':0.0):6.21E-4,(('Burkholderia pseudomallei 1710b NC_007434':6.9E-5,'Burkholderia pseudomallei 1106a NC_009076':2.09E-4):1.34E-4,(('Burkholderia mallei SAVP1 NC_008784':0.0,'Burkholderia mallei NCTC 10247 NC_009079':0.0):0.0,('Burkholderia mallei NCTC 10229 NC_008835':0.0,'Burkholderia mallei ATCC 23344 NC_006348':0.0):0.0):6.65E-4):3.97E-4):0.003409):0.002618,'Burkholderia multivorans ATCC 17616 NC_010084':0.006407):1.54E-4):0.010803):0.005177):0.013127,('Polynucleobacter necessarius subsp. necessarius STIR1 NC_010531':0.004558,'Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 NC_009379':0.006059):0.04353):0.00348,'Janthinobacterium sp. Marseille NC_009659':0.033472):0.004072,(('Bordetella petrii DSM 12804 NC_010170':0.008289,('Bordetella pertussis Tohama I NC_002929':1.33E-4,('Bordetella parapertussis 12822 NC_002928':0.0,'Bordetella bronchiseptica RB50 NC_002927':0.0):1.45E-4):0.008124):0.002249,'Bordetella avium 197N NC_010645':0.010366):0.038414):0.010567):0.006942,('Nitrosospira multiformis ATCC 25196 NC_007614':0.032606,('Nitrosomonas eutropha C91 NC_008344':0.016168,'Nitrosomonas europaea ATCC 19718 NC_004757':0.015704):0.02168):0.024655):4.62E-4,(('Thiobacillus denitrificans ATCC 25259 NC_007404':0.049409,'Methylobacillus flagellatus KT NC_007947':0.04209):0.006551,('Dechloromonas aromatica RCB NC_007298':0.041685,('Aromatoleum aromaticum EbN1 NC_006513':0.019075,'Azoarcus sp. BH72 NC_008702':0.01743):0.026818):0.008343):0.001955):0.005706,((('Neisseria meningitidis Z2491 NC_003116':0.001943,('Neisseria meningitidis MC58 NC_003112':0.001781,('Neisseria meningitidis FAM18 NC_008767':0.001521,'Neisseria meningitidis 053442 NC_010120':3.18E-4):7.09E-4):0.001091):0.00154,'Neisseria gonorrhoeae FA 1090 NC_002946':0.005855):0.046436,'Chromobacterium violaceum ATCC 12472 NC_005085':0.04402):0.009545):0.027702):0.0025,((('Nitrosococcus oceani ATCC 19707 NC_007484':0.059146,('Halorhodospira halophila SL1 NC_008789':0.050895,'Alkalilimnicola ehrlichii MLHE-1 NC_008340':0.037446):0.015731):0.005148,'Methylococcus capsulatus str. Bath NC_002977':0.059643):0.004196,('Coxiella burnetii RSA 331 NC_010117':0.011316,'Coxiella burnetii RSA 493 NC_002971':0.0):0.058067):0.005821):2.14E-4,('Thiomicrospira crunogena XCL-2 NC_007520':0.066049,('Candidatus Vesicomyosocius okutanii HA NC_009465':0.016684,'Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica) NC_008610':0.011449):0.060349):0.011431):0.001191):0.003139,((('Legionella pneumophila subsp. pneumophila str. Philadelphia 1 NC_002942':8.3E-5,'Legionella pneumophila str. Corby NC_009494':0.001296):0.001565,'Legionella pneumophila str. Lens NC_006369':0.0):0.003078,'Legionella pneumophila str. Paris NC_006368':3.58E-4):0.070937):0.006538):0.047046,'Coxiella burnetii Dugway 5J108-111 NC_009727':0.002933):0.150411,('Pyrobaculum aerophilum str. IM2 NC_003364':0.204367,'Mycobacterium avium subsp. paratuberculosis K-10 NC_002944':1.016612):0.0);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr77477]


END;