#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 18, 2024; 19:16 GMT TreeBASE (cc) 1994-2008 Study reference: Kluting K.L., Baroni T.J., & Bergemann S.E. 2014. Toward a stable classification of genera within the Entolomataceae: a phylogenetic re-evaluation of the Rhodocybe-Clitopilus clade. Mycologia, 106(6): 1127-1142. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S15480] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=95; TAXLABELS Catathelasma_imperiale_11CA01A Clitopilus_Aff._hobsonii_UC1860830 Clitopilus_Cf._argentinus_MTB4804.2 Clitopilus_Cf._prunulus_E226 Clitopilus_apalus_WAT26394 Clitopilus_cinerascens_8024TJB Clitopilus_cinerascens_8133TJB Clitopilus_crispus_10027TJB Clitopilus_crispus_9982TJB Clitopilus_hobsonii_5967TJB Clitopilus_hobsonii_DLL9586 Clitopilus_hobsonii_DLL9635 Clitopilus_hobsonii_DLL9643 Clitopilus_hobsonii_DLL9746 Clitopilus_hobsonii_DLL9779 Clitopilus_hobsonii_grp._7051TJB Clitopilus_paxilloides_5809TJB Clitopilus_peri_10033TJB Clitopilus_peri_10040TJB Clitopilus_peri_10041TJB Clitopilus_prunulus_11CA012 Clitopilus_prunulus_6805TJB Clitopilus_prunulus_7003TJB Clitopilus_prunulus_REH8456 Clitopilus_sp._7130TJB Clitopilus_venososulcatus_8111TJB Mycena_Aff._pura_11CA007 Panellus_stipticus_11CA052 Rhodocybe_Aff._nitellina_5528TJB Rhodocybe_Aff._nitellina_DLL10199 Rhodocybe_alutacea_5726TJB Rhodocybe_caelata_6919TJB Rhodocybe_caelata_J.Parkin Rhodocybe_caelata_K.M.158060 Rhodocybe_caelata_REH3569 Rhodocybe_collybioides_10417TJB Rhodocybe_fallax_25668OKM Rhodocybe_fallax_K.M.116541 Rhodocybe_fallax_O.F88953 Rhodocybe_formosa_1061015.6 Rhodocybe_fuliginea_E537 Rhodocybe_hirneola_155.SC Rhodocybe_hirneola_Artsobs.1376857 Rhodocybe_hirneola_REH8490 Rhodocybe_hondensis_6103TJB Rhodocybe_lateritia_E1589 Rhodocybe_luteocinnamomea_GUA241 Rhodocybe_mellea_6883TJB Rhodocybe_melleopallens_K.M.143160 Rhodocybe_melleopallens_O.F172919 Rhodocybe_minutispora_1071101.4 Rhodocybe_mundula_7115TJB Rhodocybe_mundula_7161TJB Rhodocybe_mundula_7599TJB Rhodocybe_mundula_K.M.164736 Rhodocybe_mundula_K.M.49620 Rhodocybe_mundula_O.F19454 Rhodocybe_mundula_O.F71544 Rhodocybe_nitellina_11CA025 Rhodocybe_nitellina_6404TJB Rhodocybe_nitellina_6740TJB Rhodocybe_nitellina_7861TJB Rhodocybe_nitellina_Artsobs.1541959 Rhodocybe_nitellina_Artsobs.1553208 Rhodocybe_nitellina_K.M.132700 Rhodocybe_nitellina_MC3.CAR Rhodocybe_nitellina_O.F285851 Rhodocybe_nitellina_O.F291457 Rhodocybe_nitellina_O.F293352 Rhodocybe_pallidogrisea_E652 Rhodocybe_paurii_JM99.233 Rhodocybe_popinalis_6378TJB Rhodocybe_popinalis_K.M.143166 Rhodocybe_popinalis_K.M.146162 Rhodocybe_popinalis_K.M.167017 Rhodocybe_popinalis_MC2.TRENT Rhodocybe_popinalis_O.F105360 Rhodocybe_popinalis_O.F63376 Rhodocybe_pseudopiperita_E1159 Rhodocybe_reticulata_E2183 Rhodocybe_rhizogena_5551TJB Rhodocybe_roseiavellanea_8130TJB Rhodocybe_sienna_6167TJB Rhodocybe_sp._DLL10032 Rhodocybe_sp._DLL10218 Rhodocybe_sp._DLL9846 Rhodocybe_sp._DLL9851 Rhodocybe_sp._DLL9860 Rhodocybe_sp._DLL9952 Rhodocybe_sp._DLL9957 Rhodocybe_stangliana_2073TL Rhodocybe_stipitata_5523TJB Rhodophana_sp._COFC5029 Tricholoma_aurantium_LCG2308 Tricholoma_flavovirens_11CA038 ; END; BEGIN TREES; TITLE 'Rhodocybe MLT rpb2, atp6, tef1'; LINK TAXA = Taxa; TREE Fig._1 = [&R] (((Rhodophana_sp._COFC5029:0.12673950326592484,((Rhodocybe_stangliana_2073TL:0.22001949760701134,(Rhodocybe_nitellina_11CA025:0.011697278868888342,(Rhodocybe_nitellina_6740TJB:8.982470963495513E-4,Rhodocybe_melleopallens_O.F172919:0.00265977170115832)99:0.012451222557457469)99:0.04439022873088771)52:0.011184463275761492,(((Rhodocybe_nitellina_K.M.132700:0.04554065161657612,Rhodocybe_melleopallens_K.M.143160:0.030860523996248758)84:0.010219711576623146,((Rhodocybe_nitellina_Artsobs.1541959:0.030584656835921487,(Rhodocybe_nitellina_O.F293352:0.015149064270435773,(Rhodocybe_nitellina_MC3.CAR:0.009397201437181207,(Rhodocybe_nitellina_O.F291457:0.005984618145434863,Rhodocybe_nitellina_O.F285851:0.004073481444418821)99:0.008731703277260585)90:8.354345584116607E-4)94:0.013318870087143763)77:0.005054146891937902,((Rhodocybe_Aff._nitellina_5528TJB:0.0013776927419357342,Rhodocybe_sienna_6167TJB:0.0019031737211611624)100:0.014994187666424305,(Rhodocybe_nitellina_7861TJB:0.006139550772264592,Rhodocybe_nitellina_Artsobs.1553208:0.006085730473545037)100:0.015476799213442275)73:0.0039036451560531408)99:0.010869446193640418)88:0.04306745096095865,(Rhodocybe_Aff._nitellina_DLL10199:0.04854523996012327,Rhodocybe_nitellina_6404TJB:0.019341632961130412)100:0.11254006571198039)38:0.008700178968984255)69:0.02815760583943429)100:0.1153296948238969,((((((Rhodocybe_sp._DLL10032:0.033253479937051036,(Rhodocybe_fuliginea_E537:0.008520881106577465,(Rhodocybe_sp._DLL10218:6.706617591362334E-4,Rhodocybe_sp._DLL9846:5.800229645694804E-4)100:0.006938768466242687)100:0.017291315415208675)73:0.010316522834183613,(Rhodocybe_caelata_6919TJB:2.8122673127938E-6,Rhodocybe_stipitata_5523TJB:2.8122673127938E-6)100:0.023523769541633998)100:0.0832105854309502,((Rhodocybe_caelata_K.M.158060:7.212379149979535E-4,(Rhodocybe_formosa_1061015.6:0.003922337446391892,Rhodocybe_minutispora_1071101.4:2.8122673127938E-6)66:5.670448584704565E-4)100:0.07812221455760852,((Rhodocybe_sp._DLL9860:0.07968729351101952,(((((Rhodocybe_alutacea_5726TJB:0.01879569969437465,Rhodocybe_pseudopiperita_E1159:0.015516260914100903)97:0.009521550498735288,Rhodocybe_hondensis_6103TJB:0.01079330257761067)100:0.05550635644070391,Rhodocybe_luteocinnamomea_GUA241:0.16371784565936312)66:0.01695988276397956,(Rhodocybe_lateritia_E1589:0.0398553016721894,Rhodocybe_roseiavellanea_8130TJB:0.04905531596690377)97:0.014385355345565464)100:0.05253180272391715,(Rhodocybe_sp._DLL9851:0.048189564516228245,(Rhodocybe_sp._DLL9952:0.03744516054500259,(Rhodocybe_pallidogrisea_E652:2.8122673127938E-6,Rhodocybe_reticulata_E2183:2.8122673127938E-6)100:0.055364221713836294)87:0.009285432850525141)67:0.004549664352068623)37:0.003402431179439813)88:0.012420810265349521,(Rhodocybe_paurii_JM99.233:0.08548298654272113,(Rhodocybe_caelata_REH3569:0.034306334133940554,Rhodocybe_rhizogena_5551TJB:0.05581144304776389)36:0.0010752645024689456)68:0.007218701447219432)59:0.004588886009469761)92:0.016973463754580313)40:0.005206934379858388,(Rhodocybe_mellea_6883TJB:0.10519783162141916,Rhodocybe_sp._DLL9957:0.05537274416814848)100:0.05387118026533033)92:0.04114690685036272,(Rhodocybe_caelata_J.Parkin:0.10657720845775158,Rhodocybe_collybioides_10417TJB:0.10945384434114308)86:0.03134759831497395)100:0.06292874219788022,(((Rhodocybe_hirneola_REH8490:0.005235720598212803,Rhodocybe_hirneola_Artsobs.1376857:0.0015938435904789792)99:0.017936189972979816,Rhodocybe_hirneola_155.SC:0.0013078211948844476)100:0.09237450115206106,(((((Clitopilus_crispus_10027TJB:0.0021023454965558453,(Clitopilus_apalus_WAT26394:0.002089940159420631,Clitopilus_crispus_9982TJB:2.6331000931000535E-4)68:6.918682446650409E-4)100:0.04618426876701785,(Clitopilus_peri_10041TJB:2.8122673127938E-6,(Clitopilus_peri_10040TJB:0.0011116240300406584,Clitopilus_peri_10033TJB:2.8122673127938E-6)94:0.0017036951052798101)100:0.060415217379873064)100:0.079612092006373,(Clitopilus_Cf._prunulus_E226:0.02599921749812381,((Clitopilus_prunulus_REH8456:0.0011631654595112585,(Clitopilus_paxilloides_5809TJB:2.8122673127938E-6,Clitopilus_prunulus_11CA012:6.176967777719505E-4)93:0.0012199439636061723)93:0.007881711973910892,(Clitopilus_prunulus_7003TJB:0.014231028730823693,Clitopilus_prunulus_6805TJB:0.004700182962058812)60:0.004698020469048804)74:0.012821026633943935)100:0.07612002532702992)100:0.03583698760249448,((Clitopilus_hobsonii_DLL9779:0.0679013135635296,(((Clitopilus_hobsonii_DLL9643:2.8122673127938E-6,Clitopilus_hobsonii_DLL9635:2.8122673127938E-6)100:0.07019717543305945,(Clitopilus_hobsonii_grp._7051TJB:0.013931375609738596,Clitopilus_hobsonii_5967TJB:0.01922829178011668)100:0.09230327256361463)39:0.01191088902484278,Clitopilus_hobsonii_DLL9586:0.07660025050800985)43:0.00965712100714705)100:0.047769691425487024,((Clitopilus_hobsonii_DLL9746:0.03930978681270484,Clitopilus_Aff._hobsonii_UC1860830:0.02522607296522037)100:0.04658847074339185,((Clitopilus_venososulcatus_8111TJB:0.01756267157955132,(Clitopilus_cinerascens_8024TJB:0.0020970202232667846,Clitopilus_cinerascens_8133TJB:9.359495368383339E-4)92:0.004564059004158209)100:0.027183292247753413,(Clitopilus_sp._7130TJB:2.8122673127938E-6,Clitopilus_Cf._argentinus_MTB4804.2:2.8122673127938E-6)100:0.06117174431666531)100:0.039077805241357434)100:0.04037592574924369)95:0.02477593693611497)93:0.03400686825255013,((Rhodocybe_fallax_25668OKM:0.027678984598653453,(Rhodocybe_fallax_O.F88953:2.8122673127938E-6,Rhodocybe_fallax_K.M.116541:6.063171761722905E-4)100:0.039785224412205326)90:0.012425770097177056,(((Rhodocybe_popinalis_MC2.TRENT:0.001225016488162994,(Rhodocybe_mundula_O.F71544:0.0038160627604999363,(Rhodocybe_mundula_7115TJB:0.002868962162557802,Rhodocybe_mundula_7161TJB:0.001376000515214315)99:0.004418883115021034)16:2.8122673127938E-6)100:0.029068865153453444,(Rhodocybe_mundula_O.F19454:0.019073311270162544,(((Rhodocybe_popinalis_K.M.167017:2.8122673127938E-6,(Rhodocybe_popinalis_O.F63376:2.8122673127938E-6,(Rhodocybe_popinalis_K.M.146162:0.0011843007060468003,Rhodocybe_popinalis_O.F105360:2.8122673127938E-6)52:6.919797806329904E-4)40:2.8122673127938E-6)76:0.0013863841286008362,Rhodocybe_popinalis_K.M.143166:2.8122673127938E-6)77:0.0014879993123659535,((Rhodocybe_mundula_K.M.164736:2.8122673127938E-6,Rhodocybe_popinalis_6378TJB:0.002019416841636804)93:0.0025705274054244037,Rhodocybe_mundula_K.M.49620:0.001222615212072602)80:2.8122673127938E-6)100:0.01190410744238261)100:0.02592011084384389)100:0.05446831464830069,Rhodocybe_mundula_7599TJB:0.038424070980356384)98:0.023508887614412194)100:0.11853229311563251)100:0.05733216018393852)99:0.04674481279050453)100:0.09017683601503204)99:0.03843837622325553,((Tricholoma_aurantium_LCG2308:0.1026461317217044,Tricholoma_flavovirens_11CA038:0.10788160747412939)100:0.1428871953359762,((Panellus_stipticus_11CA052:0.14433651568809064,Mycena_Aff._pura_11CA007:0.11240614355271367)100:0.3041605431655622,Catathelasma_imperiale_11CA01A:0.12635240955201119)89:0.037365976846394505)99:0.03843837622325553); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr77758] END;