#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 17, 2024; 22:49 GMT TreeBASE (cc) 1994-2008 Study reference: Raimondo M.L., Lops F., & Carlucci A. 2014. Phaeoacremonium italicum sp. nov., a new species associated with esca of grapevine in southern Italy. Mycologia, 106(6): 1119-1126. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S15961] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=97; TAXLABELS Phaeoacremonium_alvesii_AY579301_AY579234 Phaeoacremonium_amstelodamense_AY579294_AY579227 Phaeoacremonium_amstelodamense_AY579295_AY579228 Phaeoacremonium_amygdalinum_JN191307_JN191303 Phaeoacremonium_angustius_DQ173104_DQ173127 Phaeoacremonium_armeniacum_EU596526_EU595463 Phaeoacremonium_australiense_AY579296_AY579229 Phaeoacremonium_australiense_EU128069_EU128111 Phaeoacremonium_australiense_EU128070_EU128112 Phaeoacremonium_canadense_KF764651_KF764499 Phaeoacremonium_canadense_KF764653_KF764501 Phaeoacremonium_cinereum_FJ517161_FJ517153 Phaeoacremonium_croatiense_EU863482_EU863514 Phaeoacremonium_fuscum_EU128098_EU128141 Phaeoacremonium_fuscum_EU128099_EU128140 Phaeoacremonium_globosum_EU596527_EU595459 Phaeoacremonium_griseorubrum_EU128074_EU128116 Phaeoacremonium_griseorubrum_EU128075_EU128117 Phaeoacremonium_hispanicum_FJ517164_FJ517156 Phaeoacremonium_hispanicum_HQ605019_HQ604996 Phaeoacremonium_hungaricum_EU863483_EU863515 Phaeoacremonium_inflatipes_AF246805_AY579259 Phaeoacremonium_inflatipes_AY579323_AY579260 Phaeoacremonium_iranianum_DQ173097_DQ173120 Phaeoacremonium_iranianum_EU128078_EU128120 Phaeoacremonium_italicum_Pm19_CBS_137763 Phaeoacremonium_italicum_Pm20_CBS_137764 Phaeoacremonium_italicum_Pm21 Phaeoacremonium_italicum_Pm22 Phaeoacremonium_italicum_Pm30 Phaeoacremonium_italicum_Pm31 Phaeoacremonium_italicum_Pm32 Phaeoacremonium_italicum_Pm33 Phaeoacremonium_luteum_KF823800_KF835406 Phaeoacremonium_occidentale_EU596524_EU595460 Phaeoacremonium_pallidum_EU128103_EU128144 Phaeoacremonium_prunicolum_EU128095_EU128137 Phaeoacremonium_prunicolum_EU128096_EU128138 Phaeoacremonium_roseum_KF764658_KF764506 Phaeoacremonium_roseum_KF764659_KF764507 Phaeoacremonium_santali_KF823796_KF835402 Phaeoacremonium_santali_KF823797_KF835403 Phaeoacremonium_santali_KF823801_KF835407 Phaeoacremonium_scolyti_AF246800_AY579224 Phaeoacremonium_scolyti_AY579292_AY579223 Phaeoacremonium_scolyti_EU128084_EU128126 Phaeoacremonium_scolyti_Pm13 Phaeoacremonium_scolyti_Pm14 Phaeoacremonium_scolyti_Pm15 Phaeoacremonium_scolyti_Pm16 Phaeoacremonium_scolyti_Pm17 Phaeoacremonium_scolyti_Pm34 Phaeoacremonium_scolyti_Pm35 Phaeoacremonium_sicilianum_EU863489_EU863521 Phaeoacremonium_sphinctrophorum_DQ173113_DQ173142 Phaeoacremonium_subulatum_AY579298_AY579231 Phaeoacremonium_subulatum_EU128092_EU128134 Phaeoacremonium_tardicrescens_AY579300_AY579233 Phaeoacremonium_theobromatis_DQ173106_DQ173132 Phaeoacremonium_tuscanum_EU863458_EU863490 Phaeoacremonium_venezuelense_AY579318_AY579251 Phaeoacremonium_venezuelense_AY579320_AY579256 Phaeoacremonium_viticola_DQ173105_DQ173128 Phaeoacremonium_viticola_DQ173107_DQ173133 Pleurostomophora_richardsiae_AY579334_AY579271 Togninia_africana_EU128100_EU128142 Togninia_africana_EU128101_EU128143 Togninia_argentiniensis_DQ173108_DQ173135 Togninia_austroafricana_DQ173099_DQ173122 Togninia_fraxinopennsylvanica_EU128079_EU128121 Togninia_fraxinopennsylvanica_EU128080_EU128122 'Togninia griseo-olivacea EU128097 EU128139' Togninia_krajdenii_AY579330_AY579267 Togninia_minima_AF246806_AY735498 Togninia_minima_AF246811_AY735497 Togninia_minima_DQ173094_DQ173135 Togninia_minima_EU128063_EU128105 Togninia_minima_EU128065_EU128107 Togninia_minima_Pm1 Togninia_minima_Pm2 Togninia_minima_Pm3 Togninia_minima_Pm36 Togninia_minima_Pm37 Togninia_minima_Pm4 Togninia_minima_Pm5 Togninia_minima_Pm6 Togninia_minima_Pm7 Togninia_minima_Pm9 'Togninia novae-zealandiae DQ173110 DQ173139' Togninia_parasitica_AF246803_AY579253 Togninia_parasitica_EU128081_EU128123 Togninia_parasitica_Pm12 Togninia_parasitica_Pm28 Togninia_parasitica_Pm29 Togninia_rubrigena_AF246802_AY579238 Togninia_viratilis_DQ649063_DQ649064 Wuestneia_molokaiensis_AY579335_AY579272 ; END; BEGIN TREES; TITLE Phaeoacremonium_italicum_MP; LINK TAXA = Taxa; TREE PAUP_1 = [&R] ((Pleurostomophora_richardsiae_AY579334_AY579271:0.5174443326879415,Wuestneia_molokaiensis_AY579335_AY579272:0.7523254574671345):0.04820007362561188,(Phaeoacremonium_sicilianum_EU863489_EU863521:0.3484348033416582,((Phaeoacremonium_amygdalinum_JN191307_JN191303:0.1564372283209183,((Phaeoacremonium_pallidum_EU128103_EU128144:0.05658370237349765,(Phaeoacremonium_theobromatis_DQ173106_DQ173132:0.06400940376096814,(Togninia_austroafricana_DQ173099_DQ173122:0.05349492940573414,((Phaeoacremonium_viticola_DQ173107_DQ173133:1.32684766453489E-6,Phaeoacremonium_viticola_DQ173105_DQ173128:0.0019818610488593776):0.002170521645651487,(Phaeoacremonium_angustius_DQ173104_DQ173127:0.014161093932300703,(Phaeoacremonium_roseum_KF764659_KF764507:1.32684766453489E-6,Phaeoacremonium_roseum_KF764658_KF764506:1.32684766453489E-6):0.0039061671548568963):0.01208449688888384):0.028716174042168096):0.021592688764741682):0.022007192258996514):0.03590390730527329,(('Togninia griseo-olivacea EU128097 EU128139':0.07224969676346517,((Togninia_argentiniensis_DQ173108_DQ173135:0.05554537262236854,(Phaeoacremonium_armeniacum_EU596526_EU595463:0.039339730052563505,Phaeoacremonium_globosum_EU596527_EU595459:0.028129853579754338):0.03339897906198104):0.04061003977505529,(((Phaeoacremonium_prunicolum_EU128095_EU128137:1.32684766453489E-6,Phaeoacremonium_prunicolum_EU128096_EU128138:1.32684766453489E-6):0.10531407726595389,(Togninia_africana_EU128100_EU128142:1.32684766453489E-6,Togninia_africana_EU128101_EU128143:1.32684766453489E-6):0.0933527359653382):0.029514833429872354,('Togninia novae-zealandiae DQ173110 DQ173139':0.11301956369976161,((Phaeoacremonium_canadense_KF764651_KF764499:1.32684766453489E-6,Phaeoacremonium_canadense_KF764653_KF764501:1.32684766453489E-6):0.0784382449550372,(Phaeoacremonium_hungaricum_EU863483_EU863515:0.06533828143761296,((Togninia_fraxinopennsylvanica_EU128079_EU128121:1.32684766453489E-6,Togninia_fraxinopennsylvanica_EU128080_EU128122:1.32684766453489E-6):0.04027979930436289,(Phaeoacremonium_occidentale_EU596524_EU595460:0.029250213941477463,Phaeoacremonium_croatiense_EU863482_EU863514:0.02682861708853647):0.0025406864430128464):0.022902753548287247):0.0270293356266988):0.013407750980281454):0.03165543260067834):0.008155542791688047):0.021632477105947987):0.06856232959962945,(Phaeoacremonium_tuscanum_EU863458_EU863490:0.05187501264032255,((Phaeoacremonium_iranianum_EU128078_EU128120:1.32684766453489E-6,Phaeoacremonium_iranianum_DQ173097_DQ173120:1.32684766453489E-6):0.02999679705963793,(((Togninia_minima_EU128065_EU128107:1.32684766453489E-6,Togninia_minima_EU128063_EU128105:1.32684766453489E-6):1.32684766453489E-6,((Togninia_minima_Pm6:1.32684766453489E-6,Togninia_minima_Pm5:1.32684766453489E-6):1.32684766453489E-6,(Togninia_minima_DQ173094_DQ173135:1.32684766453489E-6,(Togninia_minima_Pm1:1.32684766453489E-6,Togninia_minima_Pm3:1.32684766453489E-6):1.32684766453489E-6):1.32684766453489E-6):1.32684766453489E-6):1.32684766453489E-6,(Togninia_minima_Pm4:1.32684766453489E-6,(Togninia_minima_Pm2:1.32684766453489E-6,(Togninia_minima_Pm7:1.32684766453489E-6,(Togninia_minima_Pm9:1.32684766453489E-6,(Togninia_minima_Pm36:1.32684766453489E-6,(Togninia_minima_Pm37:1.32684766453489E-6,(Togninia_minima_AF246811_AY735497:0.014475424700959702,Togninia_minima_AF246806_AY735498:0.002010882300989971):1.32684766453489E-6):1.32684766453489E-6):1.32684766453489E-6):1.32684766453489E-6):1.32684766453489E-6):1.32684766453489E-6):0.0020200929376539057):0.05785816264151726):0.024218966786080248):0.07942673615049355):0.0038267795103844007):0.03763112486540894):0.054063334639646556,((Phaeoacremonium_scolyti_Pm15:6.63423832267445E-6,Phaeoacremonium_scolyti_AY579292_AY579223:1.32684766453489E-6,Phaeoacremonium_scolyti_Pm14:6.63423832267445E-6,Phaeoacremonium_scolyti_Pm16:6.63423832267445E-6,Phaeoacremonium_scolyti_Pm34:6.63423832267445E-6,Phaeoacremonium_scolyti_Pm13:6.63423832267445E-6,Phaeoacremonium_scolyti_Pm35:6.63423832267445E-6,Phaeoacremonium_scolyti_Pm17:5.30739065813956E-6,(Phaeoacremonium_scolyti_EU128084_EU128126:1.32684766453489E-6,Phaeoacremonium_scolyti_AF246800_AY579224:1.32684766453489E-6):0.0019262078021527198):0.024855358188722646,(((Phaeoacremonium_santali_KF823797_KF835403:1.32684766453489E-6,Phaeoacremonium_santali_KF823796_KF835402:1.32684766453489E-6):0.022129873653879212,(Phaeoacremonium_amstelodamense_AY579294_AY579227:1.32684766453489E-6,(Phaeoacremonium_griseorubrum_EU128074_EU128116:0.0038641708547338233,Phaeoacremonium_griseorubrum_EU128075_EU128117:0.0019179292735846535):0.005789645327161011):0.005274746419580156):0.0038879880308491615,((Togninia_parasitica_AF246803_AY579253:1.32684766453489E-6,(Togninia_parasitica_EU128081_EU128123:0.0018829420801252824,(Togninia_parasitica_Pm29:1.32684766453489E-6,(Togninia_parasitica_Pm12:1.32684766453489E-6,Togninia_parasitica_Pm28:1.32684766453489E-6):1.32684766453489E-6):1.32684766453489E-6):0.0037951973825533056):0.16511635706629488,((Togninia_rubrigena_AF246802_AY579238:0.032630241922585894,(Phaeoacremonium_alvesii_AY579301_AY579234:0.005860774796174481,(Phaeoacremonium_italicum_Pm30:1.32684766453489E-6,(Phaeoacremonium_italicum_Pm22:1.32684766453489E-6,(Phaeoacremonium_italicum_Pm20_CBS_137764:1.32684766453489E-6,(Phaeoacremonium_italicum_Pm33:1.32684766453489E-6,(Phaeoacremonium_italicum_Pm19_CBS_137763:1.32684766453489E-6,(Phaeoacremonium_italicum_Pm32:1.32684766453489E-6,(Phaeoacremonium_italicum_Pm21:1.32684766453489E-6,Phaeoacremonium_italicum_Pm31:1.32684766453489E-6):1.32684766453489E-6):1.32684766453489E-6):1.32684766453489E-6):1.32684766453489E-6):1.32684766453489E-6):1.32684766453489E-6):0.017152217267449817):0.007821881901611897):0.06948393117385207,((Phaeoacremonium_tardicrescens_AY579300_AY579233:0.02953292386955819,(Phaeoacremonium_luteum_KF823800_KF835406:1.32684766453489E-6,Phaeoacremonium_santali_KF823801_KF835407:1.32684766453489E-6):0.02280543165701398):0.06763908173005902,(((Phaeoacremonium_subulatum_EU128092_EU128134:0.0018534912638918466,Phaeoacremonium_subulatum_AY579298_AY579231:0.005772034127830394):0.018462315674661393,(Phaeoacremonium_australiense_AY579296_AY579229:1.32684766453489E-6,(Phaeoacremonium_australiense_EU128069_EU128111:1.32684766453489E-6,Phaeoacremonium_australiense_EU128070_EU128112:1.32684766453489E-6):1.32684766453489E-6):0.035475975318986):0.03680139900148565,(Phaeoacremonium_amstelodamense_AY579295_AY579228:0.012204685804526341,((Phaeoacremonium_venezuelense_AY579320_AY579256:0.0390205648981357,(Phaeoacremonium_venezuelense_AY579318_AY579251:0.07325984268350925,(Togninia_krajdenii_AY579330_AY579267:0.13994973116020634,Phaeoacremonium_sphinctrophorum_DQ173113_DQ173142:0.26741128287966304):0.07386143249470191):0.03314498504542524):0.09171058550909124,((Phaeoacremonium_fuscum_EU128098_EU128141:1.32684766453489E-6,Phaeoacremonium_fuscum_EU128099_EU128140:1.32684766453489E-6):0.10525082998246701,((Phaeoacremonium_inflatipes_AY579323_AY579260:1.32684766453489E-6,Phaeoacremonium_inflatipes_AF246805_AY579259:1.32684766453489E-6):0.1402969916123077,(Phaeoacremonium_cinereum_FJ517161_FJ517153:0.10627124204875453,(Togninia_viratilis_DQ649063_DQ649064:0.017466883187922982,(Phaeoacremonium_hispanicum_FJ517164_FJ517156:0.008164450438318928,Phaeoacremonium_hispanicum_HQ605019_HQ604996:0.03353517375675912):0.018151711933208175):0.06575303077372323):0.017984267138984218):0.10928237098656247):0.02803585543963627):0.004577788641075545):0.056178802745398784):0.009814469656348329):0.04632467262928374):0.03414303724492872):0.0419249655433371):0.03814854931436181):0.08293867182523715):0.054063334639646556):0.09808865331414028); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr80716] END;