#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 19, 2024; 20:34 GMT TreeBASE (cc) 1994-2008 Study reference: Chen L., Muchuku J.K., Yan X., Hu G., & Wang Q. 2015. Phylogeography of Haplocarpha rueppelii (Asteraceae) suggests a geographic barrier in East Africa. Science Bulletin, 60: 1184-1192. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S17091] BEGIN TAXA; TITLE Nuclear_ITS_Matrix; DIMENSIONS NTAX=65; TAXLABELS Haplocarpha_nervosa_McKenzie_970_GRA Haplocarpha_parvifolia_Mucina_290805_GRA Haplocarpha_rueppellii_De_Wilde_JJFE_6742_M_1_Bale Haplocarpha_rueppellii_De_Wilde_JJFE_6742_M_2_Bale Haplocarpha_rueppellii_J_Grau_1922_M_Kenya Haplocarpha_rueppellii_MR_24038_M_Kilimanjaro Haplocarpha_rueppellii_S124_HIB_1_Elgon Haplocarpha_rueppellii_S124_HIB_10_Elgon Haplocarpha_rueppellii_S124_HIB_11_Elgon Haplocarpha_rueppellii_S124_HIB_12_Elgon Haplocarpha_rueppellii_S124_HIB_13_Elgon Haplocarpha_rueppellii_S124_HIB_14_Elgon Haplocarpha_rueppellii_S124_HIB_15_Elgon Haplocarpha_rueppellii_S124_HIB_2_Elgon Haplocarpha_rueppellii_S124_HIB_3_Elgon Haplocarpha_rueppellii_S124_HIB_4_Elgon Haplocarpha_rueppellii_S124_HIB_5_Elgon Haplocarpha_rueppellii_S124_HIB_6_Elgon Haplocarpha_rueppellii_S124_HIB_7_Elgon Haplocarpha_rueppellii_S124_HIB_8_Elgon Haplocarpha_rueppellii_S124_HIB_9_Elgon Haplocarpha_rueppellii_S183_HIB_M_1_Kenya Haplocarpha_rueppellii_S183_HIB_M_2_Kenya Haplocarpha_rueppellii_S183_HIB_M_3_Kenya Haplocarpha_rueppellii_S183_HIB_M_4_Kenya Haplocarpha_rueppellii_S183_HIB_M_5_Kenya Haplocarpha_rueppellii_S183_HIB_M_6_Kenya Haplocarpha_rueppellii_S183_HIB_M_7_Kenya Haplocarpha_rueppellii_S183_HIB_M_8_Kenya Haplocarpha_rueppellii_S191_HIB_1_Kenya Haplocarpha_rueppellii_S191_HIB_10_Kenya Haplocarpha_rueppellii_S191_HIB_11_Kenya Haplocarpha_rueppellii_S191_HIB_12_Kenya Haplocarpha_rueppellii_S191_HIB_13_Kenya Haplocarpha_rueppellii_S191_HIB_14_Kenya Haplocarpha_rueppellii_S191_HIB_15_Kenya Haplocarpha_rueppellii_S191_HIB_2_Kenya Haplocarpha_rueppellii_S191_HIB_3_Kenya Haplocarpha_rueppellii_S191_HIB_4_Kenya Haplocarpha_rueppellii_S191_HIB_5_Kenya Haplocarpha_rueppellii_S191_HIB_6_Kenya Haplocarpha_rueppellii_S191_HIB_7_Kenya Haplocarpha_rueppellii_S191_HIB_8_Kenya Haplocarpha_rueppellii_S191_HIB_9_Kenya Haplocarpha_rueppellii_S224_HIB_M_1_Aberdare Haplocarpha_rueppellii_S224_HIB_M_10_Aberdare Haplocarpha_rueppellii_S224_HIB_M_11_Aberdare Haplocarpha_rueppellii_S224_HIB_M_2_Aberdare Haplocarpha_rueppellii_S224_HIB_M_3_Aberdare Haplocarpha_rueppellii_S224_HIB_M_4_Aberdare Haplocarpha_rueppellii_S224_HIB_M_5_Aberdare Haplocarpha_rueppellii_S224_HIB_M_6_Aberdare Haplocarpha_rueppellii_S224_HIB_M_7_Aberdare Haplocarpha_rueppellii_S224_HIB_M_8_Aberdare Haplocarpha_rueppellii_S224_HIB_M_9_Aberdare Haplocarpha_rueppellii_S284_HIB_1_Kilimanjaro Haplocarpha_rueppellii_S284_HIB_10_Kilimanjaro Haplocarpha_rueppellii_S284_HIB_2_Kilimanjaro Haplocarpha_rueppellii_S284_HIB_3_Kilimanjaro Haplocarpha_rueppellii_S284_HIB_4_Kilimanjaro Haplocarpha_rueppellii_S284_HIB_5_Kilimanjaro Haplocarpha_rueppellii_S284_HIB_6_Kilimanjaro Haplocarpha_rueppellii_S284_HIB_7_Kilimanjaro Haplocarpha_rueppellii_S284_HIB_8_Kilimanjaro Haplocarpha_rueppellii_S284_HIB_9_Kilimanjaro ; END; BEGIN TREES; TITLE Haplocarpha_rueppelii_Nuclear_ITS_ML; LINK TAXA = Nuclear_ITS_Matrix; TREE tree_1 = [&R] (((((((((((((((((Haplocarpha_rueppellii_S191_HIB_11_Kenya:1.55372826138311E-6,Haplocarpha_rueppellii_S191_HIB_5_Kenya:1.55372826138311E-6):1.55372826136924E-6,(Haplocarpha_rueppellii_S183_HIB_M_2_Kenya:1.55372826138311E-6,Haplocarpha_rueppellii_S191_HIB_3_Kenya:1.55372826138311E-6):1.55372826136924E-6):1.55372826138311E-6,Haplocarpha_rueppellii_S191_HIB_4_Kenya:1.55372826138311E-6):1.55372826138311E-6,Haplocarpha_rueppellii_S191_HIB_10_Kenya:1.55372826138311E-6):1.55372826136924E-6,Haplocarpha_rueppellii_S183_HIB_M_6_Kenya:1.55372826136924E-6):1.55372826138311E-6,Haplocarpha_rueppellii_S191_HIB_15_Kenya:1.55372826138311E-6):1.55372826136924E-6,Haplocarpha_rueppellii_S191_HIB_6_Kenya:1.55372826136924E-6):1.55372826138311E-6,(Haplocarpha_rueppellii_S191_HIB_13_Kenya:1.55372826136924E-6,Haplocarpha_rueppellii_S191_HIB_12_Kenya:1.55372826136924E-6):1.55372826138311E-6):1.55372826138311E-6,(Haplocarpha_rueppellii_S183_HIB_M_7_Kenya:1.55372826138311E-6,Haplocarpha_rueppellii_J_Grau_1922_M_Kenya:1.55372826138311E-6):1.55372826138311E-6):1.55372826136924E-6,(((Haplocarpha_rueppellii_S191_HIB_14_Kenya:1.55372826136924E-6,Haplocarpha_rueppellii_S191_HIB_7_Kenya:1.55372826136924E-6):1.55372826138311E-6,Haplocarpha_rueppellii_S183_HIB_M_8_Kenya:1.55372826138311E-6):1.55372826138311E-6,(Haplocarpha_rueppellii_S191_HIB_1_Kenya:1.55372826138311E-6,Haplocarpha_rueppellii_S183_HIB_M_3_Kenya:1.55372826138311E-6):1.55372826138311E-6):1.55372826136924E-6):1.55372826138311E-6,(Haplocarpha_rueppellii_S183_HIB_M_5_Kenya:1.55372826136924E-6,Haplocarpha_rueppellii_S191_HIB_2_Kenya:1.55372826136924E-6):1.55372826138311E-6):1.55372826138311E-6,((Haplocarpha_rueppellii_S191_HIB_9_Kenya:1.55372826136924E-6,Haplocarpha_rueppellii_S191_HIB_8_Kenya:1.55372826136924E-6):0.0015599056233497333,Haplocarpha_rueppellii_S183_HIB_M_4_Kenya:1.55372826138311E-6):1.55372826138311E-6):1.55372826136924E-6,Haplocarpha_rueppellii_S183_HIB_M_1_Kenya:1.55372826136924E-6):0.004976105904466427,((((((((Haplocarpha_rueppellii_S284_HIB_7_Kilimanjaro:1.55372826136924E-6,Haplocarpha_rueppellii_S284_HIB_2_Kilimanjaro:1.55372826136924E-6):1.55372826138311E-6,Haplocarpha_rueppellii_S284_HIB_3_Kilimanjaro:1.55372826138311E-6):1.55372826138311E-6,Haplocarpha_rueppellii_S284_HIB_5_Kilimanjaro:1.55372826138311E-6):1.55372826136924E-6,(Haplocarpha_rueppellii_S284_HIB_4_Kilimanjaro:1.55372826138311E-6,Haplocarpha_rueppellii_S284_HIB_6_Kilimanjaro:0.001556291443696095):1.55372826138311E-6):0.0015611700188523786,(Haplocarpha_rueppellii_S284_HIB_1_Kilimanjaro:1.55372826136924E-6,Haplocarpha_rueppellii_S284_HIB_9_Kilimanjaro:1.55372826136924E-6):1.55372826138311E-6):1.55372826138311E-6,Haplocarpha_rueppellii_S284_HIB_10_Kilimanjaro:1.55372826136924E-6):0.0015628973371748789,Haplocarpha_rueppellii_MR_24038_M_Kilimanjaro:0.01006781007385768):1.55372826138311E-6,Haplocarpha_rueppellii_S284_HIB_8_Kilimanjaro:1.55372826136924E-6):0.001345940765796777):0.026525326126606442,(((((((((((Haplocarpha_rueppellii_S124_HIB_10_Elgon:1.55372826138311E-6,Haplocarpha_rueppellii_S124_HIB_9_Elgon:1.55372826138311E-6):1.55372826138311E-6,(Haplocarpha_rueppellii_S124_HIB_3_Elgon:1.55372826138311E-6,Haplocarpha_rueppellii_S124_HIB_7_Elgon:1.55372826138311E-6):1.55372826138311E-6):1.55372826138311E-6,(Haplocarpha_rueppellii_S124_HIB_12_Elgon:1.55372826138311E-6,Haplocarpha_rueppellii_S124_HIB_2_Elgon:1.55372826138311E-6):1.55372826138311E-6):1.55372826138311E-6,Haplocarpha_rueppellii_S124_HIB_1_Elgon:1.55372826138311E-6):1.55372826138311E-6,Haplocarpha_rueppellii_S124_HIB_5_Elgon:1.55372826138311E-6):1.55372826138311E-6,((Haplocarpha_rueppellii_S224_HIB_M_10_Aberdare:0.001566920809563166,Haplocarpha_rueppellii_S124_HIB_11_Elgon:1.55372826138311E-6):1.55372826138311E-6,Haplocarpha_rueppellii_S124_HIB_4_Elgon:1.55372826138311E-6):1.55372826138311E-6):0.0015835832628385976,Haplocarpha_rueppellii_S224_HIB_M_11_Aberdare:0.0015571592220937347):0.0059126464907084675,Haplocarpha_rueppellii_S124_HIB_8_Elgon:1.55372826138311E-6):0.004417121486083246,Haplocarpha_rueppellii_S124_HIB_6_Elgon:1.55372826137617E-6):0.003251166325790013,Haplocarpha_rueppellii_S124_HIB_13_Elgon:0.0017043395351318616):0.005847628854908873,(((((((((Haplocarpha_rueppellii_S224_HIB_M_8_Aberdare:1.55372826137617E-6,Haplocarpha_rueppellii_S224_HIB_M_4_Aberdare:1.55372826137617E-6):1.55372826137617E-6,Haplocarpha_rueppellii_S124_HIB_14_Elgon:1.55372826137617E-6):1.55372826137617E-6,(Haplocarpha_rueppellii_S224_HIB_M_9_Aberdare:1.55372826137617E-6,Haplocarpha_rueppellii_S224_HIB_M_6_Aberdare:1.55372826137617E-6):1.55372826137617E-6):1.55372826137617E-6,(Haplocarpha_rueppellii_S224_HIB_M_5_Aberdare:1.55372826137617E-6,Haplocarpha_rueppellii_S224_HIB_M_1_Aberdare:1.55372826137617E-6):1.55372826137617E-6):1.55372826137617E-6,Haplocarpha_rueppellii_S224_HIB_M_3_Aberdare:1.55372826137617E-6):1.55372826137617E-6,Haplocarpha_rueppellii_S224_HIB_M_7_Aberdare:1.55372826137617E-6):1.55372826137617E-6,Haplocarpha_rueppellii_S124_HIB_15_Elgon:1.55372826137617E-6):1.55372826137617E-6,Haplocarpha_rueppellii_S224_HIB_M_2_Aberdare:1.55372826137617E-6):0.0047708431884806585,(Haplocarpha_rueppellii_De_Wilde_JJFE_6742_M_1_Bale:1.55372826137617E-6,Haplocarpha_rueppellii_De_Wilde_JJFE_6742_M_2_Bale:1.55372826137617E-6):0.003150297795537202):0.004274218097600313):0.021502070041089748):0.005155977941357415,Haplocarpha_nervosa_McKenzie_970_GRA:0.009297874832462305):0.01343099012944009,Haplocarpha_parvifolia_Mucina_290805_GRA:0.026861980258880182); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr85432] END;