#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 18, 2024; 16:22 GMT TreeBASE (cc) 1994-2008 Study reference: Brown K., Li L., Bailes E., & Tarlinton R.E. 2015. An Endogenous Lentivirus in a Mainland African Primate. Evolution, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S17230] BEGIN TAXA; TITLE Untitled_Block_of_Taxa; DIMENSIONS NTAX=64; TAXLABELS Bovine_immunodeficiency_virus Caprine_arthritis_enephalitis_virus ELVgv_Malayan_Colugo ELVmpf_Ferret Equine_infectious_anaemia_virus FIVOma_Pallas_Cat FIVPleE_Lion FIVaju_Cheetah FIVccr_Spotted_Hyena FIVfca_Domestic_cat_Subtype_C FIVfca_Domestic_cat_TM2 FIVhya_Jaguarundi FIVlpa_Ocelot FIVlru_Bobcat FIVpco_Puma HIV_1_Group_M HIV_1_Group_N HIV_1_Group_O HIV_1_Group_P HIV_2_Group_A HIV_2_Group_B HIV1_Group_U Maedi_Visna_virus Mason_Pfizer_Monkey_Virus Ovine_lentivirus PSIVfdl_Fat_Tailed_Dwarf_Lemur PSIVgml_Grey_Mouse_Lemur RELIK_European_Rabbit SIVagi_Agile_Mangabey SIVagmGri_African_Green_Monkey_Grivet SIVagmSab_Afican_Green_Monkey_Sabaeus SIVagmTan_African_Green_Monkey_Tantalus SIVagmVer_White_Crowned_Mangabey SIVasc_Red_Tailed_Monkey SIVbkm_Black_Mangabey SIVblc_Black_Colobus SIVcol_Mantled_Guereza SIVcpz_Central_African_Chimpanzee SIVcpz_Eastern_Chimpanzee SIVdeb_De_Brazzas_Monkey SIVden_Dents_Mona SIVdrl_Drill SIVgor_Gorilla SIVgsn_Greater_Spot_Nosed_Monkey SIVlhoest_LHoests_Monkey SIVmac_Rhesus_Macaque SIVmnd1_Mandrill SIVmnd2_Mandrill SIVmon_Mona_Monkey SIVmus_Moustached_Guenon SIVnme_Pig_Tailed_Macaque SIVolc_Olive_Colobus SIVprg_Preuss_Guenon SIVrcm_Red_Capped_Mangabey SIVreg_Red_Eared_Guenon SIVsmm_Sooty_Mangabey SIVstm_Stump_Tailed_Macaque SIVsun_Sun_Tailed_Monkey SIVsyk_Sykes_Monkey SIVtal_Gabon_talapoin SIVtrc_Temmincks_Red_Colobus SIVwol_Wolfs_Mona_Monkey SIVwrc_Western_Red_Colobus pSIVmb_Mohol_Bushbaby ; END; BEGIN TREES; TITLE PhyML_lentivirus_phylogeny; LINK TAXA = Untitled_Block_of_Taxa; TREE tree_1 = [&R] (ELVgv_Malayan_Colugo:1.03857,(((((((((SIVwol_Wolfs_Mona_Monkey:0.2127,SIVden_Dents_Mona:0.29868):0.05071,SIVdeb_De_Brazzas_Monkey:0.32619):0.06081,((SIVbkm_Black_Mangabey:0.29775,(((SIVmon_Mona_Monkey:0.23961,SIVreg_Red_Eared_Guenon:0.25729):0.03291,(SIVmus_Moustached_Guenon:0.2325,SIVgsn_Greater_Spot_Nosed_Monkey:0.23089):0.06614):0.03702,SIVasc_Red_Tailed_Monkey:0.3218):0.07765):0.06824,(SIVsyk_Sykes_Monkey:0.35869,SIVtal_Gabon_talapoin:0.42421):0.08527):0.04855):0.12504,((SIVagmVer_White_Crowned_Mangabey:0.28442,SIVagmGri_African_Green_Monkey_Grivet:0.27784):0.07058,SIVagmTan_African_Green_Monkey_Tantalus:0.25367):0.10537):0.02762,(SIVagmSab_Afican_Green_Monkey_Sabaeus:0.23746,(((SIVmnd2_Mandrill:0.14857,SIVdrl_Drill:0.14571):0.10451,(SIVrcm_Red_Capped_Mangabey:0.09524,SIVagi_Agile_Mangabey:0.09421):0.09481):0.05933,(SIVcpz_Eastern_Chimpanzee:0.24858,(((SIVgor_Gorilla:0.10451,HIV_1_Group_P:0.09972):0.04135,HIV_1_Group_O:0.17857):0.06722,(((HIV1_Group_U:0.05735,HIV_1_Group_M:0.05853):0.10097,HIV_1_Group_N:0.1085):0.03478,SIVcpz_Central_African_Chimpanzee:0.13515):0.07282):0.07198):0.10522):0.05305):0.06375):0.0273,(HIV_2_Group_B:0.13972,((SIVstm_Stump_Tailed_Macaque:0.093,(SIVsmm_Sooty_Mangabey:0.07967,(SIVnme_Pig_Tailed_Macaque:0.00976,SIVmac_Rhesus_Macaque:0.02178):0.06982):0.03688):0.05782,HIV_2_Group_A:0.11453):0.03309):0.29314):0.05912,((SIVmnd1_Mandrill:0.29072,((SIVsun_Sun_Tailed_Monkey:0.22879,SIVlhoest_LHoests_Monkey:0.20081):0.0539,SIVprg_Preuss_Guenon:0.20686):0.07863):0.10511,((SIVwrc_Western_Red_Colobus:0.16077,SIVtrc_Temmincks_Red_Colobus:0.16835):0.21188,SIVolc_Olive_Colobus:0.49608):0.08164):0.04724):0.07151,(SIVcol_Mantled_Guereza:0.26751,SIVblc_Black_Colobus:0.34669):0.30544):0.23136,((PSIVfdl_Fat_Tailed_Dwarf_Lemur:0.0317,(pSIVmb_Mohol_Bushbaby:0.00313,PSIVgml_Grey_Mouse_Lemur:0.0):0.01268):0.79328,(((((((FIVfca_Domestic_cat_TM2:0.12114,FIVfca_Domestic_cat_Subtype_C:0.09428):0.14704,(FIVPleE_Lion:0.13094,(FIVOma_Pallas_Cat:0.10191,FIVaju_Cheetah:0.12232):0.01732):0.10175):0.03168,FIVlru_Bobcat:0.17096):0.07583,FIVhya_Jaguarundi:0.20681):0.03995,(FIVpco_Puma:0.30759,FIVlpa_Ocelot:0.18431):0.0533):0.24311,((ELVmpf_Ferret:0.58977,FIVccr_Spotted_Hyena:0.12619):0.0704,(RELIK_European_Rabbit:0.6891,Equine_infectious_anaemia_virus:0.9732):0.06967):0.07759):0.08117,(Bovine_immunodeficiency_virus:1.27982,(Caprine_arthritis_enephalitis_virus:0.19141,(Maedi_Visna_virus:0.11958,Ovine_lentivirus:0.11232):0.06241):0.79026):0.15707):0.0748):0.15341):0.54161,Mason_Pfizer_Monkey_Virus:2.68863); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr85971] END;