#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 25, 2024; 1:23 GMT

TreeBASE (cc) 1994-2008

Study reference:
Justo A., Angelini C., & Bizzi A. 2015. Smithiomyces dominicanus (Agaricales: Agaricaceae),
a new species from the Dominican Republic. Phytotaxa, 226(1): 092–098.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S17615]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=80;
        TAXLABELS
            Agaricaceae_sp_ecv3807
            Agaricus_bitorquis
            Agaricus_californicus
            Agaricus_campestris
            Agaricus_diminutivus
            Agaricus_inapertus
            Allopsalliota_geesterani
            Chamaemyces_fracidus
            Chlorophyllum_brunneum
            Chlorophyllum_hortense
            Chlorophyllum_molybdites
            Chlorophyllum_rachodes
            Clarkeinda_trachodes
            Coniolepiota_spongodes
            Coprinus_comatus
            Coprinus_sterquilinus
            Cystolepiota_fumosifolia
            Cystolepiota_petasiformis
            Cystolepiota_seminuda
            Eriocybe_chionea
            Heinemannomyces_splendidissima
            Hymenagaricus_taiwanensis
            Lepiota_aff_erminea
            Lepiota_aff_fuscovinacea_mflu_09_00129
            Lepiota_aspera
            Lepiota_brunneoincarnata
            Lepiota_castaneidisca
            Lepiota_cf_fuscovinacea_ecv3556
            Lepiota_cingulum
            Lepiota_cristata
            Lepiota_cristatoides
            Lepiota_cystophoroides
            Lepiota_echinella
            Lepiota_farinolens
            Lepiota_felina
            Lepiota_flammeotincta
            Lepiota_forquignonii
            Lepiota_fuscovinacea
            Lepiota_haemorrhagica
            Lepiota_hystrix
            Lepiota_lilacea
            Lepiota_magnispora
            Lepiota_nigrescentipes
            Lepiota_ochraceofulva
            Lepiota_perplexa
            Lepiota_psalion
            Lepiota_pseudolilacea
            Lepiota_roseolivida
            Lepiota_scaberula
            Lepiota_spheniscispora
            Lepiota_xanthophylla
            Leucoagaricus_americanus
            Leucoagaricus_barssii
            Leucoagaricus_cinerascens
            Leucoagaricus_croceovelutinus
            Leucoagaricus_crystallifer
            Leucoagaricus_georginae
            Leucoagaricus_ionidicolor
            Leucoagaricus_leucothites
            Leucoagaricus_melanotrichus
            Leucoagaricus_meleagris
            Leucoagaricus_nympharum
            Leucoagaricus_serenus
            Leucoagaricus_sericatellus
            Leucoagaricus_sericifer
            Leucoagaricus_sublittoralis
            Leucoagaricus_tener
            Leucocoprinus_brebissonii
            Leucocoprinus_fragilissimus
            Macrolepiota_clelandii
            Macrolepiota_dolichaula
            Macrolepiota_mastoidea
            Macrolepiota_procera
            Melanophyllum_haematospermum
            Micropsalliota_sp_Laessoe_6025
            Pluteus_cervinus
            Pluteus_hongoi
            Smithiomyces_dominicanus_CA18
            Smithiomyces_mexicanus
            Verrucospora_flavofusca
            ;
END;

BEGIN TREES;
      TITLE Agaricaceae_combined;
      LINK TAXA = Taxa;
      TREE Imported_tree_1 = [&R] ((((Lepiota_fuscovinacea:0.1313203072993227,(((((Chamaemyces_fracidus:0.12297767128751452,Lepiota_psalion:0.1044724647533374)97:0.04220387034134903,(Lepiota_scaberula:0.02618320320242884,Lepiota_cystophoroides:0.028980927589899168)95:0.014468080760515777)58:0.023818724464175357,(Lepiota_cristatoides:0.053514885406400356,(Lepiota_castaneidisca:0.027681344539171527,Lepiota_cristata:0.04953083700097492)67:0.011649240702781963)54:0.0062227180546629785)30:0.011881329866571751,((Lepiota_cingulum:0.02938560611858298,Verrucospora_flavofusca:0.11237906163275671)99:0.039909375859648454,(Lepiota_farinolens:0.1153058927278452,Lepiota_brunneoincarnata:0.07300668134174247)31:0.013157545384558992)47:0.023215952406853726)25:0.008657515143957791,Lepiota_nigrescentipes:0.12764275908796946)20:0.005632604286445753)45:0.007748052509511893,(((Lepiota_forquignonii:0.11260195878347595,(Lepiota_xanthophylla:0.06686826006437416,Lepiota_echinella:0.10453432502674652)75:0.018862350830159656)94:0.026563507857403416,((Lepiota_felina:0.049698875258387724,Lepiota_pseudolilacea:0.01393412634880429)100:0.09021333156307478,(Lepiota_aff_erminea:0.030703943499122307,(Lepiota_spheniscispora:0.03857383083882189,Lepiota_magnispora:0.03763984906604946)79:0.011693279510788324)100:0.06657892340336544)66:0.009005680720505702)97:0.04885603300825865,(Lepiota_ochraceofulva:0.15046988461729133,Lepiota_lilacea:0.05150701169345019)46:0.019261860468217876)8:1.59902527881524E-6)27:0.01939039892742163,((Coprinus_sterquilinus:0.02936550801196174,Coprinus_comatus:0.07220824401238761)100:0.10677424958831822,(((Cystolepiota_petasiformis:0.14723111315143167,((Lepiota_aspera:0.04704944896232318,Lepiota_hystrix:0.04692629914384235)100:0.07602618182500596,Lepiota_perplexa:0.12466346287227802)73:0.03155399002140816)21:0.010114010472069185,((Cystolepiota_fumosifolia:0.09157157212775441,Melanophyllum_haematospermum:0.08640667079415683)88:0.03223685635690133,(Cystolepiota_seminuda:0.07754540771889849,(Smithiomyces_mexicanus:0.1483653294420467,Smithiomyces_dominicanus_CA18:0.11543005581739238)100:0.31095522082542526)16:0.018584458066882244)25:0.022635996909183657)33:0.019503454983891513,((Macrolepiota_mastoidea:0.04634340360222212,(Macrolepiota_clelandii:0.033095944127610126,(Macrolepiota_dolichaula:0.07021915422097735,Macrolepiota_procera:0.008486176206587905)85:0.00964783903499874)66:0.00838611638365798)100:0.0458872155183411,((((Chlorophyllum_brunneum:0.051219381048556376,Chlorophyllum_rachodes:0.03660655185197466)100:0.047085241641568576,(Chlorophyllum_molybdites:0.04188148637449281,Chlorophyllum_hortense:0.0818989098480613)26:0.011292209861943363)48:0.017341919219633666,(((Lepiota_aff_fuscovinacea_mflu_09_00129:0.11811802281999373,(Agaricaceae_sp_ecv3807:0.05617666129269416,(Hymenagaricus_taiwanensis:0.14644493847426543,Micropsalliota_sp_Laessoe_6025:0.1322457341315496)90:0.028862448617136348)97:0.0511150891461486)98:0.04921070717303084,Eriocybe_chionea:0.10253129555057613)68:0.025440094376918715,(((Agaricus_californicus:0.026039039097833575,(Agaricus_bitorquis:0.06511011198198259,((Agaricus_diminutivus:0.045224230312649626,Agaricus_inapertus:0.025407127538130195)97:0.018568810957951033,Agaricus_campestris:0.03930544961773367)96:0.02010441792638477)73:0.01212614477838979)100:0.06702105175628147,(Heinemannomyces_splendidissima:0.13469363944108095,(Lepiota_cf_fuscovinacea_ecv3556:0.1874627280917203,Coniolepiota_spongodes:0.09310476221989089)67:0.046989680862753534)18:0.002882222805391619)21:0.006635245115460737,Clarkeinda_trachodes:0.0821697906580201)38:0.01468788033411694)100:0.0771387876750054)99:0.033325238006502396,((Leucoagaricus_serenus:0.14663551301495753,(Leucoagaricus_crystallifer:0.05609309694086009,Leucoagaricus_sublittoralis:0.08442197819285033)100:0.06252898104296845)97:0.03158367830600777,((((Lepiota_flammeotincta:0.13361474067249107,(Leucoagaricus_ionidicolor:0.05335313229912704,(Leucoagaricus_georginae:0.09618426983876578,Lepiota_roseolivida:0.04125570591915903)52:0.013202473127901364)54:0.011026105690161337)25:0.006709416593277236,Leucoagaricus_barssii:0.0626543268404755)42:0.0111263888907857,((((Leucoagaricus_cinerascens:0.0668974543361237,((Leucoagaricus_nympharum:0.005603122751070368,Leucoagaricus_leucothites:0.010650419522865367)100:0.030955971091558943,(Leucoagaricus_melanotrichus:0.05497929839975189,Leucoagaricus_tener:0.10905376521920823)95:0.03537865811670266)39:0.0061692355595941465)55:0.008489883812586358,(Leucocoprinus_fragilissimus:0.1027884306112735,Leucocoprinus_brebissonii:0.051471729171940636)55:0.00994585420914658)67:0.011796540940547336,(Leucoagaricus_sericifer:0.008874870420036712,Leucoagaricus_sericatellus:0.005831695662531261)100:0.07114975576750224)26:0.004810629206952867,(Lepiota_haemorrhagica:0.055757057907646346,Leucoagaricus_croceovelutinus:0.04907945785226054)100:0.06722982439147103)36:0.011705920351820992)80:0.0216509207029997,(Leucoagaricus_americanus:0.02077250306912473,(Leucoagaricus_meleagris:0.020511985977762145,Allopsalliota_geesterani:0.20103141089954196)38:0.006133186568024716)81:0.030951751908903483)82:0.029461286455734172)56:0.012771995513541813)77:0.020015019148363244)99:0.05569231201497795)29:0.008224392374555236)6:1.59902527881524E-6)100:0.2755811159243611,(Pluteus_cervinus:0.019930154395973284,Pluteus_hongoi:0.00782728019220334)100:0.2755811159243611);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr87683]


END;