#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 19, 2024; 7:46 GMT

TreeBASE (cc) 1994-2008

Study reference:
Walker J.B., Drew B.T., & Sytsma K.J. 2015. Unravelling Species Relationships and
Diversification within the Iconic California Floristic Province Sages (Salvia subgenus
Audibertia, Lamiaceae). Systematic Botany, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S16712]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=54;
        TAXLABELS
            Dorystaechas_hastata
            Lepechinia_chamaedryoides
            Meriandra_bengalensis
            Salvia_apiana_jbw3058
            Salvia_apiana_jbw3180
            Salvia_apiana_jbw3202
            Salvia_apiana_jbw3208
            Salvia_apiana_var_compacta_jbw3100
            Salvia_axillaris
            Salvia_brandegei_Jbw2551
            Salvia_brandegei_Jbw3212
            Salvia_californica_jbw2520
            Salvia_carduacea_Jbw3091
            Salvia_carduacea_jbw3176
            Salvia_carduacea_thibault53
            Salvia_cedrosensis
            Salvia_chionopeplica_jbw2545
            Salvia_chionopeplica_jbw3216
            Salvia_clevelandii_jbw3064
            Salvia_clevelandii_jbw3079
            Salvia_columbariae_jbw3066
            Salvia_columbariae_jbw3070
            Salvia_columbariae_jbw3191
            Salvia_dorrii_jbw3116
            Salvia_dorrii_jbw3136
            Salvia_dorrii_jbw3193
            Salvia_eremostachya_jbw3097
            Salvia_funerea_Jbw3106
            Salvia_funerea_jbw3131
            Salvia_glutinosa
            Salvia_greatae_jbw2511
            Salvia_leucophylla_jbw3170
            Salvia_leucophylla_jbw3182
            Salvia_leucophylla_jbw3189
            Salvia_mellifera_jbw2550
            Salvia_mellifera_jbw3145
            Salvia_mellifera_jbw3174
            Salvia_mellifera_jbw3181
            Salvia_mellifera_jbw3187
            Salvia_mohavensis_jbw3111
            Salvia_mohavensis_jbw3119
            Salvia_munzii_jbw3055
            Salvia_munzii_jbw3209
            Salvia_munzii_jbw3220
            Salvia_pachyphylla_jbw3203
            Salvia_patens
            Salvia_pinacatensis
            Salvia_roemeriana
            Salvia_sonomensis_jbw3152
            Salvia_sonomensis_jbw3163
            Salvia_spathacea_jbw3157
            Salvia_spathacea_jbw3159
            Salvia_spathacea_jbw3166
            Salvia_vaseyi_jbw3101
            ;
END;

BEGIN TREES;
      TITLE Audibertia_54_taxa_ITS_ETS_garli_best;
      LINK TAXA = Taxa;
      TREE bestREP3 = [&R] (Salvia_mohavensis_jbw3111:9.0721E-4,(Salvia_pinacatensis:0.003825,((((Salvia_spathacea_jbw3159:0.00196329,Salvia_spathacea_jbw3157:1.0E-8,Salvia_spathacea_jbw3166:1.0E-8):0.01472799,(((Salvia_chionopeplica_jbw2545:1.0E-8,(Salvia_leucophylla_jbw3189:1.0E-8,(Salvia_leucophylla_jbw3182:1.0E-8,Salvia_leucophylla_jbw3170:9.1496E-4):0.00107748):0.0046352):0.0141858,(((Salvia_columbariae_jbw3191:0.00518494,Salvia_columbariae_jbw3066:1.0E-8):0.0027319,Salvia_columbariae_jbw3070:0.00122227):0.04889986,((((Salvia_axillaris:0.10884187,Salvia_cedrosensis:0.06602287):0.01462242,Salvia_patens:0.06051771):0.01945579,((Salvia_glutinosa:0.07546576,(Lepechinia_chamaedryoides:0.07280495,Salvia_roemeriana:0.07167451):0.01606679):0.02399149,(Dorystaechas_hastata:0.03159248,Meriandra_bengalensis:0.02319414):0.00187277):0.0101827):0.00557119,((Salvia_carduacea_Jbw3091:0.0017112,(Salvia_carduacea_jbw3176:1.0E-8,Salvia_carduacea_thibault53:1.0E-8):0.00230096):0.03933204,((Salvia_funerea_jbw3131:0.00354411,Salvia_funerea_Jbw3106:0.00173724):0.01084844,(Salvia_greatae_jbw2511:0.00970259,Salvia_californica_jbw2520:0.00887225):0.00472623):0.01668167):0.00692526):0.0416627):0.03441286):0.00556949,((Salvia_brandegei_Jbw2551:1.0E-8,Salvia_brandegei_Jbw3212:1.0E-8):0.00622919,((Salvia_mellifera_jbw3181:9.0948E-4,Salvia_mellifera_jbw2550:1.0E-8,Salvia_mellifera_jbw3187:1.0E-8,Salvia_mellifera_jbw3174:1.0E-8,Salvia_mellifera_jbw3145:1.0E-8):0.00181168,((Salvia_apiana_var_compacta_jbw3100:0.00368396,(Salvia_apiana_jbw3180:9.2744E-4,Salvia_apiana_jbw3202:1.0E-8,(Salvia_apiana_jbw3058:1.0E-8,Salvia_apiana_jbw3208:1.0E-8):9.0278E-4):9.1042E-4):0.00272747,(Salvia_clevelandii_jbw3079:1.0E-8,Salvia_chionopeplica_jbw3216:1.0E-8,Salvia_clevelandii_jbw3064:9.7519E-4):0.00634915,(Salvia_vaseyi_jbw3101:0.00185432,Salvia_eremostachya_jbw3097:0.00414516,(Salvia_munzii_jbw3220:9.5856E-4,Salvia_munzii_jbw3055:1.0E-8,Salvia_munzii_jbw3209:9.6241E-4):0.00288852):0.00272216):0.0027309):0.00303749):0.00625606):0.00116035):0.0018674,(Salvia_sonomensis_jbw3152:1.0E-8,Salvia_sonomensis_jbw3163:1.0E-8):0.01111164):9.326E-4,(Salvia_pachyphylla_jbw3203:0.00194839,(Salvia_dorrii_jbw3136:0.00184585,Salvia_dorrii_jbw3116:1.0E-8,Salvia_dorrii_jbw3193:0.00251143):0.00120809):0.00187329):0.00593091):0.00236997,Salvia_mohavensis_jbw3119:1.0E-8);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr87979]


END;