#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 17, 2024; 17:33 GMT

TreeBASE (cc) 1994-2008

Study reference:
Sant'anna F.H., Lebedinsky A.V., Sokolova T.G., Robb F.T., & Gonzalez J.M. 2015.
Analysis of three genomes within the thermophilic bacterial species Caldanaerobacter
subterraneus with a focus on carbon monoxide dehydrogenase evolution and hydrolase
diversity. BMC Genomics, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S18113]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=31;
        TAXLABELS
            'Caldanaerobacter subterraneus Pacificus_1'
            'Caldanaerobacter subterraneus Pacificus_2'
            'Caldanaerobacter subterraneus Pacificus_3'
            'Caldanaerobacter subterraneus Pacificus_4'
            Caldanaerobacter_subterraneus_Tengcongensis_1
            Caldanaerobacter_subterraneus_Tengcongensis_2
            Caldanaerobacter_subterraneus_Tengcongensis_3
            Caldanaerobacter_subterraneus_Tengcongensis_4
            'Caldanaerobacter subterraneus Yonseiensis_1'
            'Caldanaerobacter subterraneus Yonseiensis_2'
            'Caldanaerobacter subterraneus Yonseiensis_3'
            Caldanaerobacter_subterraneus_subsp._subterraneus
            Caldanaerobacter_uzonensis
            Carboxydothermus_hydrogenoformans_Z2901
            Desulfotomaculum_kuznetsovii
            Geobacillus_thermoglucosidasius
            Moorella_thermoacetica
            Rhodospirillum_rubrum_ATCC_11170
            Thermacetogenium_phaeum
            Thermoanaerobacter_brockii_subsp._finnii
            Thermoanaerobacter_italicus
            Thermoanaerobacter_mathranii
            Thermoanaerobacter_pseudethanolicus_1
            Thermoanaerobacter_pseudethanolicus_2
            'Thermoanaerobacter sp. YS13 THYS13_06880'
            'Thermoanaerobacter sp. YS13 THYS13_15330'
            'Thermoanaerobacter sp. YS13 THYS13_19550'
            'Thermoanaerobacter sp. YS13 THYS13_RS09555'
            'Thermoanaerobacter sp. YS13 THYS13_RS09690'
            'Thermoanaerobacter sp. YS13_THYS13_19280'
            Thermoanaerobacter_wiegelii
            ;
END;

BEGIN TREES;
      TITLE 16S_phylogeny;
      LINK TAXA = Taxa;
      TREE '16S_ML' = [&R] ((((((Thermacetogenium_phaeum:0.094639,Carboxydothermus_hydrogenoformans_Z2901:0.081131):0.045409,Moorella_thermoacetica:0.058761):0.020596,((('Thermoanaerobacter sp. YS13 THYS13_15330':1.0E-6,('Thermoanaerobacter sp. YS13 THYS13_06880':9.81E-4,((('Thermoanaerobacter sp. YS13_THYS13_19280':1.0E-6,'Thermoanaerobacter sp. YS13 THYS13_19550':1.0E-6):1.0E-6,'Thermoanaerobacter sp. YS13 THYS13_RS09555':1.0E-6):1.0E-6,'Thermoanaerobacter sp. YS13 THYS13_RS09690':1.0E-6):0.003976):9.91E-4):0.02656,((Thermoanaerobacter_mathranii:0.00816,Thermoanaerobacter_italicus:0.011702):0.033245,((Thermoanaerobacter_brockii_subsp._finnii:0.007041,Thermoanaerobacter_pseudethanolicus_1:1.0E-6):0.004899,(Thermoanaerobacter_wiegelii:0.016564,Thermoanaerobacter_pseudethanolicus_2:0.018305):0.010301):0.006039):0.0088):0.033405,((('Caldanaerobacter subterraneus Pacificus_2':1.0E-6,Caldanaerobacter_subterraneus_Tengcongensis_4:1.0E-6):0.010229,'Caldanaerobacter subterraneus Yonseiensis_3':0.005187):0.040544,((Caldanaerobacter_uzonensis:0.027933,'Caldanaerobacter subterraneus Yonseiensis_2':0.005016):0.006214,(('Caldanaerobacter subterraneus Pacificus_4':0.003202,('Caldanaerobacter subterraneus Yonseiensis_1':0.00207,'Caldanaerobacter subterraneus Pacificus_3':0.265854):0.007829):1.0E-6,(Caldanaerobacter_subterraneus_subsp._subterraneus:0.003202,(Caldanaerobacter_subterraneus_Tengcongensis_3:0.007051,(Caldanaerobacter_subterraneus_Tengcongensis_2:1.0E-6,(Caldanaerobacter_subterraneus_Tengcongensis_1:1.0E-6,'Caldanaerobacter subterraneus Pacificus_1':0.004967):0.001974):0.00297):0.002765):0.003989):0.001707):0.01411):0.020021):0.073627):0.028258,Desulfotomaculum_kuznetsovii:0.078393):0.024739,Geobacillus_thermoglucosidasius:0.093333):0.086444,Rhodospirillum_rubrum_ATCC_11170:0.086444);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr89826]


END;