#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 17, 2024; 14:29 GMT

TreeBASE (cc) 1994-2008

Study reference:
Sant'anna F.H., Lebedinsky A.V., Sokolova T.G., Robb F.T., & Gonzalez J.M. 2015.
Analysis of three genomes within the thermophilic bacterial species Caldanaerobacter
subterraneus with a focus on carbon monoxide dehydrogenase evolution and hydrolase
diversity. BMC Genomics, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S18113]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=18;
        TAXLABELS
            'Caldanaerobacter subterraneus pacificus_CDSM653_01588'
            'Caldanaerobacter subterraneus tengcongensis_NP_623303.1'
            'Caldanaerobacter subterraneus yonseiensis_ERM92235.1'
            Candidatus_Magnetoglobus_multicellularis_ETR68217.1
            Desulfobacterium_sp._CBX30160.1
            'Desulfotignum phosphitoxidans WP_006964992.1'
            'Desulfotomaculum acetoxidans YP_003191764.1'
            'Desulfotomaculum kuznetsovii YP_004518099.1'
            'Desulfurispora thermophila WP_018086202.1'
            'Escherichia coli WP_001079181.1'
            'Escherichia coli WP_001299064.1'
            'Geobacillus YP_003989189.1'
            Geobacillus_thermoglucosidasius_AEH47840.1
            Geobacillus_thermoglucosidasius_EID44396.1
            'Methanosaeta harundinacea YP_005920612.1'
            'Thermoanaerobacter sp. YS13 THYS13_RS04695'
            'Thermococcus onnurineus TON_1017'
            'Thermodesulfobacterium thermophilum WP_022856205.1'
            ;
END;

BEGIN TREES;
      TITLE CooF_phylogeny;
      LINK TAXA = Taxa;
      TREE CooF = [&R] (((((('Geobacillus YP_003989189.1':1.0E-6,Geobacillus_thermoglucosidasius_EID44396.1:1.0E-6)0.000000:1.0E-6,Geobacillus_thermoglucosidasius_AEH47840.1:1.0E-6)1.000000:0.198642,'Caldanaerobacter subterraneus yonseiensis_ERM92235.1':0.049192)0.395000:0.08121,(((('Desulfurispora thermophila WP_018086202.1':0.161064,'Desulfotomaculum kuznetsovii YP_004518099.1':0.3281)0.677000:0.128236,'Desulfotomaculum acetoxidans YP_003191764.1':0.350796)0.980000:0.30081,(('Desulfotignum phosphitoxidans WP_006964992.1':0.136501,Candidatus_Magnetoglobus_multicellularis_ETR68217.1:0.176286)0.897000:0.113977,Desulfobacterium_sp._CBX30160.1:0.157059)0.976000:0.303302)0.000000:0.075159,('Thermococcus onnurineus TON_1017':0.823131,'Methanosaeta harundinacea YP_005920612.1':0.354904)0.148000:0.1025)0.996000:0.384228)0.704000:0.039606,(('Caldanaerobacter subterraneus tengcongensis_NP_623303.1':1.0E-6,'Thermodesulfobacterium thermophilum WP_022856205.1':0.007306)0.975000:0.087108,('Caldanaerobacter subterraneus pacificus_CDSM653_01588':1.0E-6,'Thermoanaerobacter sp. YS13 THYS13_RS04695':0.006774)0.990000:0.109944)0.584000:0.016165)1.000000:1.145906,'Escherichia coli WP_001079181.1':0.432189,'Escherichia coli WP_001299064.1':0.452382)root;
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr89837]


END;