#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 21, 2024; 4:39 GMT

TreeBASE (cc) 1994-2008

Study reference:
Sant'anna F.H., Lebedinsky A.V., Sokolova T.G., Robb F.T., & Gonzalez J.M. 2015.
Analysis of three genomes within the thermophilic bacterial species Caldanaerobacter
subterraneus with a focus on carbon monoxide dehydrogenase evolution and hydrolase
diversity. BMC Genomics, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S18113]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=10;
        TAXLABELS
            'Caldanaerobacter subterraneus pacificus_CDSM653_01586'
            'Caldanaerobacter subterraneus tengcongensis_NP_623302.1'
            'Caldanaerobacter subterraneus yonseiensis_ERM92234.1'
            'Escherichia coli YP_006125370.1'
            'Escherichia coli YP_006125568'
            'Geobacillus sp. Y4.1MC1 YP_003989190.1'
            'Geobacillus thermoglucosidasius YP_004587922.1'
            'Moorella thermoacetica YP_431023.1'
            'Thermoanaerobacter sp. YS13 THYS13_RS04690'
            'Thermococcus onnurineus TON_1021'
            ;
END;

BEGIN TREES;
      TITLE HyfB_phylogeny;
      LINK TAXA = Taxa;
      TREE HyfB_ML = [&R] (((((('Caldanaerobacter subterraneus yonseiensis_ERM92234.1':0.003787,'Caldanaerobacter subterraneus tengcongensis_NP_623302.1':1.0E-6)0.903000:0.011585,('Caldanaerobacter subterraneus pacificus_CDSM653_01586':0.00191,'Thermoanaerobacter sp. YS13 THYS13_RS04690':0.021044)0.921000:0.013368)1.000000:0.238237,('Geobacillus thermoglucosidasius YP_004587922.1':0.155964,'Geobacillus sp. Y4.1MC1 YP_003989190.1':0.04098)1.000000:0.152214)0.953000:0.085963,'Moorella thermoacetica YP_431023.1':0.090643)0.944000:0.143417,'Thermococcus onnurineus TON_1021':1.287552)0.935000:0.197195,'Escherichia coli YP_006125370.1':0.409023,'Escherichia coli YP_006125568':1.002222)root;
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr89840]


END;