#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 21, 2024; 1:47 GMT

TreeBASE (cc) 1994-2008

Study reference:
Sant'anna F.H., Lebedinsky A.V., Sokolova T.G., Robb F.T., & Gonzalez J.M. 2015.
Analysis of three genomes within the thermophilic bacterial species Caldanaerobacter
subterraneus with a focus on carbon monoxide dehydrogenase evolution and hydrolase
diversity. BMC Genomics, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S18113]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=9;
        TAXLABELS
            'Caldanaerobacter subterraneus pacificus_CDSM653 01584'
            'Caldanaerobacter subterraneus tengcongensis_NP_623300.2'
            'Caldanaerobacter subterraneus yonseiensis_WP_022587812'
            'Escherichia coli YP_006125373.1'
            'Geobacillus sp. Y4.1MC1 YP_003989192.1'
            'Geobacillus thermoglucosidasius YP_004587924.1'
            'Moorella thermoacetica YP_431021.1'
            'Thermacetogenium phaeum YP_006921297.1'
            'Thermoanaerobacter sp. YS13 THYS13_RS04680'
            ;
END;

BEGIN TREES;
      TITLE HyfE_phylogeny;
      LINK TAXA = Taxa;
      TREE HyfE_ML = [&R] ((((('Thermoanaerobacter sp. YS13 THYS13_RS04680':0.014088,('Caldanaerobacter subterraneus tengcongensis_NP_623300.2':1.0E-6,'Caldanaerobacter subterraneus pacificus_CDSM653 01584':1.0E-6)0.795000:0.00462)0.751000:0.004335,'Caldanaerobacter subterraneus yonseiensis_WP_022587812':0.004902)1.000000:0.180627,'Moorella thermoacetica YP_431021.1':0.044679)0.699000:0.051668,('Thermacetogenium phaeum YP_006921297.1':0.175653,'Escherichia coli YP_006125373.1':0.853231)0.963000:0.205135)0.993000:0.151662,'Geobacillus thermoglucosidasius YP_004587924.1':1.0E-6,'Geobacillus sp. Y4.1MC1 YP_003989192.1':1.0E-6)root;
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr89843]


END;