#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 21, 2024; 1:30 GMT

TreeBASE (cc) 1994-2008

Study reference:
Sant'anna F.H., Lebedinsky A.V., Sokolova T.G., Robb F.T., & Gonzalez J.M. 2015.
Analysis of three genomes within the thermophilic bacterial species Caldanaerobacter
subterraneus with a focus on carbon monoxide dehydrogenase evolution and hydrolase
diversity. BMC Genomics, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S18113]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=11;
        TAXLABELS
            'Caldanaerobacter subterraneus pacificus_CDSM653_01579'
            'Caldanaerobacter subterraneus tengcongensis_NP_623295.1'
            'Caldanaerobacter subterraneus yonseiensis_ERM92228.1'
            'Escherichia coli NP_416984.1'
            'Escherichia coli YP_006125564.1'
            'Geobacillus sp. Y4.1MC1 YP_003989197.1'
            'Geobacillus thermoglucosidasius YP_004587928.1'
            'Moorella thermoacetica YP_431016.1'
            'Thermacetogenium phaeum YP_006921302.1'
            'Thermoanaerobacter sp. YS13 THYS13_RS04625'
            'Thermococcus onnurineus TON_1024'
            ;
END;

BEGIN TREES;
      TITLE HyfI_phylogeny;
      LINK TAXA = Taxa;
      TREE HyfI_ML = [&R] ((((((('Caldanaerobacter subterraneus tengcongensis_NP_623295.1':1.0E-6,'Caldanaerobacter subterraneus pacificus_CDSM653_01579':1.0E-6)0.787000:0.00644,('Thermoanaerobacter sp. YS13 THYS13_RS04625':0.012964,'Caldanaerobacter subterraneus yonseiensis_ERM92228.1':0.019421)0.000000:1.0E-6)0.983000:0.091431,'Moorella thermoacetica YP_431016.1':0.126427)0.761000:0.038147,('Geobacillus thermoglucosidasius YP_004587928.1':1.0E-6,'Geobacillus sp. Y4.1MC1 YP_003989197.1':0.006107)0.984000:0.097409)0.709000:0.045544,'Thermococcus onnurineus TON_1024':1.360241)0.512000:0.082992,'Thermacetogenium phaeum YP_006921302.1':0.222907)0.990000:0.192858,'Escherichia coli NP_416984.1':0.244361,'Escherichia coli YP_006125564.1':0.206019)root;
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr89847]


END;