#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 21, 2024; 0:13 GMT

TreeBASE (cc) 1994-2008

Study reference:
Sant'anna F.H., Lebedinsky A.V., Sokolova T.G., Robb F.T., & Gonzalez J.M. 2015.
Analysis of three genomes within the thermophilic bacterial species Caldanaerobacter
subterraneus with a focus on carbon monoxide dehydrogenase evolution and hydrolase
diversity. BMC Genomics, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S18113]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=14;
        TAXLABELS
            'Caldanaerobacter subterraneus tengcongensis_NP_621823.1'
            'Caldanaerobacter subterraneus yonseiensis_ERM91334.1'
            'Coprothermobacter platensis WP_018962517.1'
            'Thermoanaerobacter ethanolicus WP_003868937.1'
            'Thermoanaerobacter indiensis WP_019907183.1'
            'Thermoanaerobacter italicus YP_003477430.1'
            'Thermoanaerobacter mathranii YP_003677326.1'
            'Thermoanaerobacter siderophilus WP_006569903.1'
            'Thermoanaerobacter thermohydrosulfuricus WP_004399991.1'
            'Thermoanaerobacter wiegelii YP_004818928.1'
            'Thermoanaerobacterium saccharolyticum YP_006391298.1'
            'Thermoanaerobacterium thermosaccharolyticum YP_003850790.1'
            'Thermoanaerobacterium thermosaccharolyticum YP_007297548.1'
            'Thermoanaerobacterium xylanolyticum YP_004469841.1'
            ;
END;

BEGIN TREES;
      TITLE EchA_phylogeny;
      LINK TAXA = Taxa;
      TREE EchA_ML = [&R] ('Coprothermobacter platensis WP_018962517.1':0.486299,((('Thermoanaerobacterium saccharolyticum YP_006391298.1':0.007277,'Thermoanaerobacterium xylanolyticum YP_004469841.1':0.003489)0.9640:0.055893,('Thermoanaerobacterium thermosaccharolyticum YP_003850790.1':0.00671,'Thermoanaerobacterium thermosaccharolyticum YP_007297548.1':0.003886)0.9710:0.044717)0.9990:0.219575,((('Caldanaerobacter subterraneus yonseiensis_ERM91334.1':0.003801,'Caldanaerobacter subterraneus tengcongensis_NP_621823.1':0.001589)1.0000:0.119945,('Thermoanaerobacter ethanolicus WP_003868937.1':0.008662,((('Thermoanaerobacter thermohydrosulfuricus WP_004399991.1':1.0E-6,'Thermoanaerobacter indiensis WP_019907183.1':1.0E-6)0.9120:0.001789,'Thermoanaerobacter wiegelii YP_004818928.1':1.0E-6)0.0000:1.0E-6,'Thermoanaerobacter siderophilus WP_006569903.1':0.00179)0.9510:0.009442)0.9950:0.043324)0.5540:0.030522,('Thermoanaerobacter mathranii YP_003677326.1':0.002193,'Thermoanaerobacter italicus YP_003477430.1':0.001386)0.9640:0.038375)1.0000:0.217503)1.0000:0.306674)root;
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr89888]


END;