#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 21, 2024; 0:53 GMT

TreeBASE (cc) 1994-2008

Study reference:
Sant'anna F.H., Lebedinsky A.V., Sokolova T.G., Robb F.T., & Gonzalez J.M. 2015.
Analysis of three genomes within the thermophilic bacterial species Caldanaerobacter
subterraneus with a focus on carbon monoxide dehydrogenase evolution and hydrolase
diversity. BMC Genomics, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S18113]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=11;
        TAXLABELS
            'Caldanaerobacter subterraneus tengcongensis_NP_621826.1'
            'Caldanaerobacter subterraneus yonseiensis_ERM91337.1'
            'Coprothermobacter platensis WP_018962514.1'
            'Thermoanaerobacter WP_004399988.1'
            'Thermoanaerobacter ethanolicus WP_003868940.1'
            'Thermoanaerobacter indiensis WP_019907185.1'
            'Thermoanaerobacter italicus YP_003477427.1'
            'Thermoanaerobacter wiegelii YP_004818931.1'
            'Thermoanaerobacterium saccharolyticum YP_006391301.1'
            'Thermoanaerobacterium thermosaccharolyticum YP_003850793.1'
            'Thermoanaerobacterium xylanolyticum YP_004469844.1'
            ;
END;

BEGIN TREES;
      TITLE EchD_phylogeny;
      LINK TAXA = Taxa;
      TREE EchD_ML = [&R] ('Coprothermobacter platensis WP_018962514.1':0.276726,((('Thermoanaerobacterium saccharolyticum YP_006391301.1':1.0E-6,'Thermoanaerobacterium xylanolyticum YP_004469844.1':0.008265)0.9760:0.11313,'Thermoanaerobacterium thermosaccharolyticum YP_003850793.1':0.032449)0.9710:0.229751,((('Thermoanaerobacter ethanolicus WP_003868940.1':0.115473,('Caldanaerobacter subterraneus tengcongensis_NP_621826.1':1.0E-6,'Caldanaerobacter subterraneus yonseiensis_ERM91337.1':1.0E-6)0.9650:0.075548)0.9880:0.105096,('Thermoanaerobacter wiegelii YP_004818931.1':0.008203,('Thermoanaerobacter indiensis WP_019907185.1':0.008189,'Thermoanaerobacter WP_004399988.1':1.0E-6)0.0000:1.0E-6)0.7690:0.035883)0.9420:0.049799,'Thermoanaerobacter italicus YP_003477427.1':1.0E-6)0.9900:0.259247)0.9750:0.213253)root;
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr89891]


END;