#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 21, 2024; 7:41 GMT

TreeBASE (cc) 1994-2008

Study reference:
Sant'anna F.H., Lebedinsky A.V., Sokolova T.G., Robb F.T., & Gonzalez J.M. 2015.
Analysis of three genomes within the thermophilic bacterial species Caldanaerobacter
subterraneus with a focus on carbon monoxide dehydrogenase evolution and hydrolase
diversity. BMC Genomics, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S18113]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=11;
        TAXLABELS
            'Caldanaerobacter subterraneus pacificus_CDSM653_0106'
            'Caldanaerobacter subterraneus tengcongensis_NP_621828.1'
            'Caldanaerobacter subterraneus yonseiensis_ERM91339.1'
            'Thermoanaerobacter WP_004399986.1'
            'Thermoanaerobacter ethanolicus WP_003868942.1'
            'Thermoanaerobacter italicus YP_003477425.1'
            'Thermoanaerobacter wiegelii YP_004818933.1'
            'Thermoanaerobacterium saccharolyticum YP_006391303.1'
            'Thermoanaerobacterium thermosaccharolyticum YP_003850795.1'
            'Thermoanaerobacterium thermosaccharolyticum YP_007297553.1'
            'Thermoanaerobacterium xylanolyticum YP_004469846.1'
            ;
END;

BEGIN TREES;
      TITLE EchF_phylogeny;
      LINK TAXA = Taxa;
      TREE EchF_ML = [&R] (((('Thermoanaerobacterium thermosaccharolyticum YP_003850795.1':0.009577,'Thermoanaerobacterium xylanolyticum YP_004469846.1':0.019778)0.7850:0.009896,'Thermoanaerobacterium saccharolyticum YP_006391303.1':1.0E-6)0.9580:0.084827,'Thermoanaerobacterium thermosaccharolyticum YP_007297553.1':0.01935)1.0000:0.305725,((('Caldanaerobacter subterraneus yonseiensis_ERM91339.1':1.0E-6,('Caldanaerobacter subterraneus tengcongensis_NP_621828.1':1.0E-6,'Caldanaerobacter subterraneus pacificus_CDSM653_0106':1.0E-6)0.0000:1.0E-6)0.9920:0.109235,'Thermoanaerobacter ethanolicus WP_003868942.1':0.027611)0.4820:0.034472,('Thermoanaerobacter WP_004399986.1':1.0E-6,('Thermoanaerobacter wiegelii YP_004818933.1':1.0E-6,'Thermoanaerobacter italicus YP_003477425.1':0.115544)0.8300:0.009615)0.8690:0.05456)0.9540:0.140674)root;
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr89893]


END;